Cow genome map

Conread name: Ss1.1-ruio34_e2.5

Conread position: 1-280
Cow position: chr20:28593505-28593776 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 86, 46

Conread position: 1-286
Cow position: chr20:19192367-19192093 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 127, 0

Conread position: 1-317
Cow position: chr20:18315819-18315518 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 83

Conread position: 1-348
Cow position: chr20:4799884-4799554 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 77

Conread position: 1-349
Cow position: chr20:10102785-10102461 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 247
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 67, 77

Conread position: 1-377
Cow position: chr20:3252372-3252007 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 128

Conread position: 1-377
Cow position: chr20:28160542-28160903 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 90

Conread position: 1-381
Cow position: chr20:5534703-5535069 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 76

Conread position: 1-381
Cow position: chr20:9954208-9953854 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 7

Conread position: 1-381
Cow position: chr20:12439000-12438630 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position: chr20:15064530-15064897 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 1-381
Cow position: chr20:21393334-21393695 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 78

Conread position: 1-381
Cow position: chr20:23469899-23469528 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 128

Conread position: 1-381
Cow position: chr20:24614311-24614665 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 77

Conread position: 1-381
Cow position: chr20:25851229-25850860 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position: chr20:28565839-28565465 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 131

Conread position: 1-382
Cow position: chr20:8313672-8313308 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-383
Cow position: chr20:30684100-30684468 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-384
Cow position: chr20:5560954-5560581 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-409
Cow position: chr20:822511-822928 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 141

Conread position: 1-409
Cow position: chr20:3270479-3270865 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 71

Conread position: 1-409
Cow position: chr20:13762667-13763064 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 78

Conread position: 1-417
Cow position: chr20:15098109-15097707 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 68

Conread position: 1-417
Cow position: chr20:19437719-19438118 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-417
Cow position: chr20:21914087-21914498 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 127

Conread position: 1-417
Cow position: chr20:27868958-27869368 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 127

Conread position: 1-421
Cow position: chr20:23798643-23799055 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 122

Conread position: 1-532
Cow position: chr20:10846317-10845780 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 74

Conread position: 5-353
Cow position: chr20:35973647-35973307 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 5-355
Cow position: chr20:29572418-29572089 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 234
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 0

Conread position: 5-394
Cow position: chr20:2676886-2677259 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 245
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 5-425
Cow position: chr20:11679345-11678934 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 123

Conread position: 6-379
Cow position: chr20:31379116-31378756 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 253
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 38

Conread position: 6-591
Cow position: chr20:22717921-22717338 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 387
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 258, 38

Conread position: 7-381
Cow position: chr20:5483958-5484320 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 56

Conread position: 31-381
Cow position: chr20:35119365-35119701 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 230, 97

Conread position: 64-381
Cow position: chr20:15291845-15292141 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 227
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 293, 15

Conread position: 73-381
Cow position: chr20:8004402-8004094 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 14

Conread position: 137-342
Cow position: chr20:15947507-15947301 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 159
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 189, 0

Conread position: 139-384
Cow position: chr20:25960991-25961237 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 152-381
Cow position: chr20:3032965-3033192 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 205, 42

Conread position: 157-417
Cow position: chr20:13680150-13679887 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 200, 100

Conread position: 192-381
Cow position: chr20:29948440-29948630 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 131, 138

Conread position: 212-381
Cow position: chr20:3684524-3684357 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 145, 156

Conread position: 355-495
Cow position: chr20:23469500-23469361 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 383-503
Cow position: chr20:3033254-3033374 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position: chr20:3251940-3251816 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 384-509
Cow position: chr20:5484383-5484509 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 59, 0

Conread position: 384-510
Cow position: chr20:3684294-3684168 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 110
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 384-543
Cow position: chr20:8313246-8313086 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 147, 0

Conread position: 385-561
Cow position: chr20:9953791-9953617 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 153, 86

Conread position: 385-591
Cow position: chr20:22206731-22206937 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 27

Conread position: 386-487
Cow position: chr20:29948695-29948796 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-494
Cow position: chr20:21914524-21914631 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 386-501
Cow position: chr20:3270900-3271015 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 27

Conread position: 386-503
Cow position: chr20:822963-823080 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position: chr20:24614730-24614848 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 386-508
Cow position: chr20:5560519-5560397 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 104
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position: chr20:13763100-13763222 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position: chr20:19495179-19495301 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 105
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position: chr20:25961299-25961421 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 105
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position: chr20:5535133-5535256 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position: chr20:8004030-8003907 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position: chr20:27869393-27869516 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position: chr20:28160966-28161089 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 386-531
Cow position: chr20:12438565-12438420 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-531
Cow position: chr20:15097681-15097536 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 386-531
Cow position: chr20:15292206-15292351 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 386-531
Cow position: chr20:21393789-21393936 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 137, 0

Conread position: 386-532
Cow position: chr20:7116273-7116128 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 110, 0

Conread position: 386-541
Cow position: chr20:13679862-13679707 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 386-544
Cow position: chr20:25850795-25850634 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 137, 0

Conread position: 387-544
Cow position: chr20:15947183-15947023 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 118, 153

Conread position: 388-579
Cow position: chr20:20905013-20904823 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 56

Conread position: 388-599
Cow position: chr20:31378688-31378478 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 191, 56

Conread position: 390-538
Cow position: chr20:15064966-15065116 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 133, 20

Conread position: 391-947
Cow position: chr20:18315411-18314879 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 115

Conread position: 572-948
Cow position: chr20:8215554-8215953 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 279

Conread position: 659-854
Cow position: chr20:22207084-22207285 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 13

Conread position: 668-948
Cow position: chr20:8993070-8992789 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 62, 16

Conread position: 678-886
Cow position: chr20:42905035-42905248 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 47, 112

Conread position: 680-948
Cow position: chr20:35104940-35105215 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 181
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 45, 250

Conread position: 726-948
Cow position: chr20:10840492-10840275 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 175, 22

Conread position: 734-946
Cow position: chr20:20754257-20754045 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 31, 96

Conread position: 738-948
Cow position: chr20:11591684-11591905 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 157

Conread position: 810-947
Cow position: chr20:35124791-35124929 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 22, 51

Conread position: 822-947
Cow position: chr20:23469357-23469232 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 46

Conread position: 825-945
Cow position: chr20:13763216-13763336 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position: chr20:5535249-5535371 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position: chr20:8003914-8003792 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position: chr20:10845810-10845688 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 19

Conread position: 825-947
Cow position: chr20:12438449-12438327 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position: chr20:25850679-25850558 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 77, 19

Conread position: 825-947
Cow position: chr20:28161082-28161204 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position: chr20:30684632-30684754 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 36

Conread position: 831-947
Cow position: chr20:15097559-15097443 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 70, 36

Conread position: 831-947
Cow position: chr20:42076743-42076627 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 71, 20

Show alignments to all cow chromosomes.