Cow genome map

Conread name: Ss1.1-ruio34_e2.5

Conread position: 1-280
Cow position:
Alignm length: 286
Alignm identity: 199
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 86, 46

Conread position: 1-286
Cow position:
Alignm length: 286
Alignm identity: 205
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 127, 0

Conread position: 1-317
Cow position:
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 83

Conread position: 1-348
Cow position:
Alignm length: 349
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 77

Conread position: 1-349
Cow position:
Alignm length: 350
Alignm identity: 247
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 67, 77

Conread position: 1-377
Cow position:
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 128

Conread position: 1-377
Cow position:
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 90

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 76

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 7

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 381
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 78

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 128

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 77

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 131

Conread position: 1-382
Cow position:
Alignm length: 384
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-383
Cow position:
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-384
Cow position:
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-409
Cow position:
Alignm length: 419
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 141

Conread position: 1-409
Cow position:
Alignm length: 413
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 71

Conread position: 1-409
Cow position:
Alignm length: 413
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 78

Conread position: 1-417
Cow position:
Alignm length: 422
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 68

Conread position: 1-417
Cow position:
Alignm length: 420
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-417
Cow position:
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 127

Conread position: 1-417
Cow position:
Alignm length: 423
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 127

Conread position: 1-421
Cow position:
Alignm length: 424
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 122

Conread position: 1-532
Cow position:
Alignm length: 551
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 74

Conread position: 5-353
Cow position:
Alignm length: 349
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 5-355
Cow position:
Alignm length: 351
Alignm identity: 234
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 0

Conread position: 5-394
Cow position:
Alignm length: 390
Alignm identity: 245
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 5-425
Cow position:
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 123

Conread position: 6-379
Cow position:
Alignm length: 380
Alignm identity: 253
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 38

Conread position: 6-591
Cow position:
Alignm length: 607
Alignm identity: 387
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 258, 38

Conread position: 7-381
Cow position:
Alignm length: 378
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 56

Conread position: 31-381
Cow position:
Alignm length: 353
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 230, 97

Conread position: 64-381
Cow position:
Alignm length: 319
Alignm identity: 227
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 293, 15

Conread position: 73-381
Cow position:
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 14

Conread position: 137-342
Cow position:
Alignm length: 207
Alignm identity: 159
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 189, 0

Conread position: 139-384
Cow position:
Alignm length: 247
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 152-381
Cow position:
Alignm length: 231
Alignm identity: 171
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 205, 42

Conread position: 157-417
Cow position:
Alignm length: 266
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 200, 100

Conread position: 192-381
Cow position:
Alignm length: 192
Alignm identity: 147
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 131, 138

Conread position: 212-381
Cow position:
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 145, 156

Conread position: 355-495
Cow position:
Alignm length: 141
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 383-503
Cow position:
Alignm length: 121
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 105
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 384-509
Cow position:
Alignm length: 127
Alignm identity: 107
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 59, 0

Conread position: 384-510
Cow position:
Alignm length: 127
Alignm identity: 110
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 384-543
Cow position:
Alignm length: 161
Alignm identity: 125
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 147, 0

Conread position: 385-561
Cow position:
Alignm length: 179
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 153, 86

Conread position: 385-591
Cow position:
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 27

Conread position: 386-487
Cow position:
Alignm length: 102
Alignm identity: 83
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-494
Cow position:
Alignm length: 109
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 386-501
Cow position:
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 27

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 100
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 104
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 105
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 105
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 386-531
Cow position:
Alignm length: 146
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-531
Cow position:
Alignm length: 146
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 386-531
Cow position:
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 386-531
Cow position:
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 137, 0

Conread position: 386-532
Cow position:
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 110, 0

Conread position: 386-541
Cow position:
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 386-544
Cow position:
Alignm length: 162
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 137, 0

Conread position: 387-544
Cow position:
Alignm length: 162
Alignm identity: 127
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 118, 153

Conread position: 388-579
Cow position:
Alignm length: 195
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 56

Conread position: 388-599
Cow position:
Alignm length: 213
Alignm identity: 145
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 191, 56

Conread position: 390-538
Cow position:
Alignm length: 152
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 133, 20

Conread position: 391-947
Cow position:
Alignm length: 566
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 115

Conread position: 572-948
Cow position:
Alignm length: 401
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 279

Conread position: 659-854
Cow position:
Alignm length: 206
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 13

Conread position: 668-948
Cow position:
Alignm length: 287
Alignm identity: 201
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 62, 16

Conread position: 678-886
Cow position:
Alignm length: 217
Alignm identity: 154
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 47, 112

Conread position: 680-948
Cow position:
Alignm length: 277
Alignm identity: 181
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 45, 250

Conread position: 726-948
Cow position:
Alignm length: 224
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 175, 22

Conread position: 734-946
Cow position:
Alignm length: 216
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 31, 96

Conread position: 738-948
Cow position:
Alignm length: 224
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 157

Conread position: 810-947
Cow position:
Alignm length: 140
Alignm identity: 111
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 22, 51

Conread position: 822-947
Cow position:
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 46

Conread position: 825-945
Cow position:
Alignm length: 122
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 19

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 77, 19

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 36

Conread position: 831-947
Cow position:
Alignm length: 118
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 70, 36

Conread position: 831-947
Cow position:
Alignm length: 118
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 71, 20

Show alignments to all cow chromosomes.