Cow genome map

Conread name: Ss1.1-ruio34_e2.5

Conread position: 1-136
Cow position:
Alignm length: 136
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-191
Cow position:
Alignm length: 191
Alignm identity: 148
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 128, 0

Conread position: 1-221
Cow position:
Alignm length: 221
Alignm identity: 154
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 128, 0

Conread position: 1-228
Cow position:
Alignm length: 228
Alignm identity: 165
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 1-233
Cow position:
Alignm length: 233
Alignm identity: 168
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 7, 0

Conread position: 1-272
Cow position:
Alignm length: 272
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 77, 0

Conread position: 1-299
Cow position:
Alignm length: 299
Alignm identity: 208
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 68, 0

Conread position: 1-303
Cow position:
Alignm length: 304
Alignm identity: 213
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 207, 14

Conread position: 1-323
Cow position:
Alignm length: 323
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 1-374
Cow position:
Alignm length: 375
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 124

Conread position: 1-375
Cow position:
Alignm length: 376
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 124

Conread position: 1-377
Cow position:
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 79

Conread position: 1-377
Cow position:
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 68

Conread position: 1-377
Cow position:
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-377
Cow position:
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 124

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 124

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 76

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 122

Conread position: 1-381
Cow position:
Alignm length: 387
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 47

Conread position: 1-381
Cow position:
Alignm length: 384
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 33

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-381
Cow position:
Alignm length: 384
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 37

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 78

Conread position: 1-381
Cow position:
Alignm length: 392
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 112

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 123

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-382
Cow position:
Alignm length: 383
Alignm identity: 261
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 356, 12

Conread position: 1-383
Cow position:
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 124

Conread position: 1-383
Cow position:
Alignm length: 391
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 117

Conread position: 1-384
Cow position:
Alignm length: 385
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 121

Conread position: 1-384
Cow position:
Alignm length: 385
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-409
Cow position:
Alignm length: 414
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 18

Conread position: 1-409
Cow position:
Alignm length: 414
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 127

Conread position: 1-417
Cow position:
Alignm length: 422
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 122

Conread position: 1-417
Cow position:
Alignm length: 422
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-425
Cow position:
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 2-380
Cow position:
Alignm length: 384
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 78

Conread position: 2-381
Cow position:
Alignm length: 383
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 77

Conread position: 2-417
Cow position:
Alignm length: 422
Alignm identity: 279
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 178, 81

Conread position: 10-381
Cow position:
Alignm length: 373
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 118

Conread position: 12-421
Cow position:
Alignm length: 413
Alignm identity: 275
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 84, 119

Conread position: 23-383
Cow position:
Alignm length: 370
Alignm identity: 254
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 62, 35

Conread position: 26-381
Cow position:
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 21

Conread position: 65-381
Cow position:
Alignm length: 334
Alignm identity: 237
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 189, 15

Conread position: 73-381
Cow position:
Alignm length: 310
Alignm identity: 214
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 284, 18

Conread position: 77-381
Cow position:
Alignm length: 306
Alignm identity: 216
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 8, 47

Conread position: 137-378
Cow position:
Alignm length: 246
Alignm identity: 168
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 105

Conread position: 140-384
Cow position:
Alignm length: 252
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 54, 29

Conread position: 168-381
Cow position:
Alignm length: 222
Alignm identity: 168
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 129, 62

Conread position: 207-416
Cow position:
Alignm length: 214
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 150, 36

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 99
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 106
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 108
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 105
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 384-510
Cow position:
Alignm length: 127
Alignm identity: 109
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 384-534
Cow position:
Alignm length: 151
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 384-615
Cow position:
Alignm length: 234
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 57

Conread position: 385-542
Cow position:
Alignm length: 159
Alignm identity: 125
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 139, 19

Conread position: 385-599
Cow position:
Alignm length: 219
Alignm identity: 158
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 151, 33

Conread position: 385-599
Cow position:
Alignm length: 217
Alignm identity: 155
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 179, 59

Conread position: 385-606
Cow position:
Alignm length: 223
Alignm identity: 160
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 152, 49

Conread position: 386-487
Cow position:
Alignm length: 102
Alignm identity: 86
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 97
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 97
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 108, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 101
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 102
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-524
Cow position:
Alignm length: 139
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 87, 0

Conread position: 386-531
Cow position:
Alignm length: 146
Alignm identity: 107
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-531
Cow position:
Alignm length: 146
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-538
Cow position:
Alignm length: 159
Alignm identity: 128
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 118, 148

Conread position: 386-538
Cow position:
Alignm length: 157
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 118, 133

Conread position: 386-542
Cow position:
Alignm length: 157
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 124, 0

Conread position: 386-544
Cow position:
Alignm length: 162
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 137, 0

Conread position: 386-544
Cow position:
Alignm length: 163
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 121, 26

Conread position: 387-508
Cow position:
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 387-509
Cow position:
Alignm length: 123
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 387-509
Cow position:
Alignm length: 123
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 388-503
Cow position:
Alignm length: 116
Alignm identity: 100
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 388-508
Cow position:
Alignm length: 121
Alignm identity: 101
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 388-509
Cow position:
Alignm length: 122
Alignm identity: 95
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 388-509
Cow position:
Alignm length: 124
Alignm identity: 105
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 388-509
Cow position:
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 388-592
Cow position:
Alignm length: 206
Alignm identity: 157
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 149, 56

Conread position: 390-724
Cow position:
Alignm length: 338
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 50

Conread position: 391-702
Cow position:
Alignm length: 325
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 36

Conread position: 659-947
Cow position:
Alignm length: 295
Alignm identity: 215
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 103, 71

Conread position: 699-947
Cow position:
Alignm length: 254
Alignm identity: 192
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 129, 37

Conread position: 728-947
Cow position:
Alignm length: 223
Alignm identity: 160
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 28, 0

Conread position: 728-947
Cow position:
Alignm length: 227
Alignm identity: 163
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 736-948
Cow position:
Alignm length: 220
Alignm identity: 165
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 25, 128

Conread position: 807-947
Cow position:
Alignm length: 143
Alignm identity: 116
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 822-947
Cow position:
Alignm length: 127
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 42

Conread position: 825-943
Cow position:
Alignm length: 120
Alignm identity: 96
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 19

Conread position: 825-946
Cow position:
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 19

Conread position: 825-946
Cow position:
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 19

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 14, 78

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 76, 32

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 100
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 76, 35

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 825-948
Cow position:
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 19

Conread position: 830-947
Cow position:
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 14

Show alignments to all cow chromosomes.