Cow genome map
| Conread name: | Ss1.1-ruio34_e2.5 |
| Conread position: | 1-268 |
| Cow position: | chr25:18411542-18411283 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 24, 129 |
| Conread position: | 1-286 |
| Cow position: | chr25:18302527-18302814 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-299 |
| Cow position: | chr25:34347241-34346955 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-341 |
| Cow position: | chr25:26921981-26922307 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 256, 111 |
| Conread position: | 1-377 |
| Cow position: | chr25:18890265-18889901 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 122 |
| Conread position: | 1-380 |
| Cow position: | chr25:18060836-18060480 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 123 |
| Conread position: | 1-381 |
| Cow position: | chr25:8674665-8675035 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 127 |
| Conread position: | 1-381 |
| Cow position: | chr25:11375596-11375229 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 97 |
| Conread position: | 1-381 |
| Cow position: | chr25:13780786-13781149 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 78 |
| Conread position: | 1-381 |
| Cow position: | chr25:14015927-14016284 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 71 |
| Conread position: | 1-381 |
| Cow position: | chr25:17468943-17468579 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 66 |
| Conread position: | 1-381 |
| Cow position: | chr25:18027879-18027506 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 124 |
| Conread position: | 1-381 |
| Cow position: | chr25:18092769-18093138 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 119 |
| Conread position: | 1-381 |
| Cow position: | chr25:22147245-22147614 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 52 |
| Conread position: | 1-381 |
| Cow position: | chr25:25506400-25506769 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 137 |
| Conread position: | 1-381 |
| Cow position: | chr25:26866975-26867361 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 234, 122 |
| Conread position: | 1-381 |
| Cow position: | chr25:34656695-34656327 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 126 |
| Conread position: | 1-381 |
| Cow position: | chr25:36240297-36240675 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 82 |
| Conread position: | 1-382 |
| Cow position: | chr25:33991306-33990939 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 127 |
| Conread position: | 1-409 |
| Cow position: | chr25:19916833-19917233 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 127 |
| Conread position: | 1-409 |
| Cow position: | chr25:20777147-20776749 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 122 |
| Conread position: | 1-417 |
| Cow position: | chr25:26279016-26279416 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 127 |
| Conread position: | 1-429 |
| Cow position: | chr25:35362669-35362266 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 78 |
| Conread position: | 2-350 |
| Cow position: | chr25:19288596-19288268 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 178, 94 |
| Conread position: | 2-381 |
| Cow position: | chr25:18276073-18275714 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 138 |
| Conread position: | 2-383 |
| Cow position: | chr25:12759843-12759478 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 345, 69 |
| Conread position: | 3-367 |
| Cow position: | chr25:20629329-20629684 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 120 |
| Conread position: | 5-377 |
| Cow position: | chr25:17589794-17589433 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 133 |
| Conread position: | 30-381 |
| Cow position: | chr25:32579746-32580085 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 98 |
| Conread position: | 56-348 |
| Cow position: | chr25:18173165-18173449 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 101-379 |
| Cow position: | chr25:17560773-17560488 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 139-381 |
| Cow position: | chr25:12942824-12942581 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 151-380 |
| Cow position: | chr25:23345451-23345221 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 164-381 |
| Cow position: | chr25:33665967-33665754 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 195-409 |
| Cow position: | chr25:27022634-27022417 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 237-421 |
| Cow position: | chr25:18195124-18194941 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 120, 160 |
| Conread position: | 383-509 |
| Cow position: | chr25:9544242-9544368 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-509 |
| Cow position: | chr25:11375166-11375042 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 384-509 |
| Cow position: | chr25:17468516-17468395 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 384-509 |
| Cow position: | chr25:34656264-34656139 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-544 |
| Cow position: | chr25:36240738-36240890 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 384-599 |
| Cow position: | chr25:18093192-18093407 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-580 |
| Cow position: | chr25:12759414-12759221 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 152, 59 |
| Conread position: | 386-476 |
| Cow position: | chr25:25506833-25506923 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-486 |
| Cow position: | chr25:17560448-17560348 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-495 |
| Cow position: | chr25:13781214-13781323 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-503 |
| Cow position: | chr25:17589370-17589253 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-503 |
| Cow position: | chr25:26922401-26922517 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 386-503 |
| Cow position: | chr25:27022382-27022265 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-503 |
| Cow position: | chr25:32580150-32580266 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 386-508 |
| Cow position: | chr25:6172087-6172209 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-508 |
| Cow position: | chr25:35362245-35362123 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-509 |
| Cow position: | chr25:8675100-8675223 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-509 |
| Cow position: | chr25:12942516-12942393 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-509 |
| Cow position: | chr25:18303585-18303707 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 386-599 |
| Cow position: | chr25:11933346-11933132 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 154, 44 |
| Conread position: | 387-525 |
| Cow position: | chr25:33665688-33665552 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 388-503 |
| Cow position: | chr25:19917270-19917385 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-509 |
| Cow position: | chr25:22147681-22147802 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-591 |
| Cow position: | chr25:18255182-18254979 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 390-509 |
| Cow position: | chr25:18275640-18275521 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 391-503 |
| Cow position: | chr25:18194909-18194797 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 391-509 |
| Cow position: | chr25:14016354-14016472 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 391-509 |
| Cow position: | chr25:18060413-18060295 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 392-544 |
| Cow position: | chr25:24659444-24659599 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 597-946 |
| Cow position: | chr25:11933048-11932681 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 725-948 |
| Cow position: | chr25:20494926-20495151 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 733-948 |
| Cow position: | chr25:33665472-33665257 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 750-947 |
| Cow position: | chr25:18422247-18422449 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 751-948 |
| Cow position: | chr25:23344682-23344477 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 825-947 |
| Cow position: | chr25:12942400-12942278 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 825-947 |
| Cow position: | chr25:18889715-18889593 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 831-947 |
| Cow position: | chr25:24659559-24659675 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 13 |
Show alignments to all cow chromosomes.