Cow genome map

Conread name: Ss1.1-ruio34_e2.5

Conread position: 1-268
Cow position:
Alignm length: 274
Alignm identity: 197
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 24, 129

Conread position: 1-286
Cow position:
Alignm length: 288
Alignm identity: 197
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 93, 0

Conread position: 1-299
Cow position:
Alignm length: 299
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 35, 0

Conread position: 1-341
Cow position:
Alignm length: 342
Alignm identity: 229
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 256, 111

Conread position: 1-377
Cow position:
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 122

Conread position: 1-380
Cow position:
Alignm length: 381
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 123

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 97

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 78

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 71

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 66

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 124

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 119

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 52

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 137

Conread position: 1-381
Cow position:
Alignm length: 398
Alignm identity: 277
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 234, 122

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 126

Conread position: 1-381
Cow position:
Alignm length: 391
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 82

Conread position: 1-382
Cow position:
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-409
Cow position:
Alignm length: 412
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-409
Cow position:
Alignm length: 413
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 122

Conread position: 1-417
Cow position:
Alignm length: 422
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-429
Cow position:
Alignm length: 430
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 2-350
Cow position:
Alignm length: 352
Alignm identity: 233
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 178, 94

Conread position: 2-381
Cow position:
Alignm length: 381
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 138

Conread position: 2-383
Cow position:
Alignm length: 383
Alignm identity: 246
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 345, 69

Conread position: 3-367
Cow position:
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 120

Conread position: 5-377
Cow position:
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 133

Conread position: 30-381
Cow position:
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 98

Conread position: 56-348
Cow position:
Alignm length: 296
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 71

Conread position: 101-379
Cow position:
Alignm length: 292
Alignm identity: 208
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 36, 23

Conread position: 139-381
Cow position:
Alignm length: 244
Alignm identity: 180
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 218, 0

Conread position: 151-380
Cow position:
Alignm length: 232
Alignm identity: 168
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 21, 30

Conread position: 164-381
Cow position:
Alignm length: 223
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 40, 96

Conread position: 195-409
Cow position:
Alignm length: 218
Alignm identity: 152
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 158, 0

Conread position: 237-421
Cow position:
Alignm length: 186
Alignm identity: 132
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 120, 160

Conread position: 383-509
Cow position:
Alignm length: 127
Alignm identity: 106
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 105
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 115, 0

Conread position: 384-509
Cow position:
Alignm length: 128
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 55

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 105
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 384-544
Cow position:
Alignm length: 161
Alignm identity: 127
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 384-599
Cow position:
Alignm length: 216
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 385-580
Cow position:
Alignm length: 197
Alignm identity: 140
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 152, 59

Conread position: 386-476
Cow position:
Alignm length: 91
Alignm identity: 78
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-486
Cow position:
Alignm length: 101
Alignm identity: 90
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 386-495
Cow position:
Alignm length: 110
Alignm identity: 87
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 99
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 99
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 99
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 102
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 104
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 101
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 101
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 386-599
Cow position:
Alignm length: 216
Alignm identity: 165
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 154, 44

Conread position: 387-525
Cow position:
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 21

Conread position: 388-503
Cow position:
Alignm length: 116
Alignm identity: 96
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 388-509
Cow position:
Alignm length: 122
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 388-591
Cow position:
Alignm length: 209
Alignm identity: 146
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 24

Conread position: 390-509
Cow position:
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 391-503
Cow position:
Alignm length: 113
Alignm identity: 96
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 391-509
Cow position:
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 391-509
Cow position:
Alignm length: 119
Alignm identity: 97
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 392-544
Cow position:
Alignm length: 156
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 0

Conread position: 597-946
Cow position:
Alignm length: 371
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 64

Conread position: 725-948
Cow position:
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 38

Conread position: 733-948
Cow position:
Alignm length: 220
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 97, 32

Conread position: 750-947
Cow position:
Alignm length: 203
Alignm identity: 140
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 751-948
Cow position:
Alignm length: 208
Alignm identity: 151
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 77, 14

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 78, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 102
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 76, 42

Conread position: 831-947
Cow position:
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 70, 13

Show alignments to all cow chromosomes.