Cow genome map


           Conread name:
           Ss1.1-ruio34_e2.5
        

               Conread position:
               1-136
               

               Cow position:
               
               

               Alignm length:
               137
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               1-357
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               35, 8
               

               Conread position:
               1-358
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               1-375
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 128
               

               Conread position:
               1-376
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 122
               

               Conread position:
               1-377
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 76
               

               Conread position:
               1-377
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               279, 78
               

               Conread position:
               1-377
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               360, 75
               

               Conread position:
               1-379
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               1-380
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 126
               

               Conread position:
               1-381
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 21
               

               Conread position:
               1-381
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 122
               

               Conread position:
               1-381
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               264
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               8, 38
               

               Conread position:
               1-381
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 139
               

               Conread position:
               1-384
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 128
               

               Conread position:
               1-409
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 127
               

               Conread position:
               1-417
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 38
               

               Conread position:
               1-417
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 53
               

               Conread position:
               3-381
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               354, 14
               

               Conread position:
               6-350
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               174, 79
               

               Conread position:
               120-417
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               61, 102
               

               Conread position:
               138-287
               

               Cow position:
               
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               142-381
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               215, 49
               

               Conread position:
               178-381
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               158
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               383-503
               

               Cow position:
               
               

               Alignm length:
               121
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               384-509
               

               Cow position:
               
               

               Alignm length:
               126
               

               Alignm identity:
               101
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               384-509
               

               Cow position:
               
               

               Alignm length:
               126
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               384-509
               

               Cow position:
               
               

               Alignm length:
               127
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               384-509
               

               Cow position:
               
               

               Alignm length:
               126
               

               Alignm identity:
               106
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               385-947
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 88
               

               Conread position:
               386-461
               

               Cow position:
               
               

               Alignm length:
               77
               

               Alignm identity:
               71
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               386-474
               

               Cow position:
               
               

               Alignm length:
               89
               

               Alignm identity:
               76
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-494
               

               Cow position:
               
               

               Alignm length:
               109
               

               Alignm identity:
               88
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-495
               

               Cow position:
               
               

               Alignm length:
               110
               

               Alignm identity:
               88
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-495
               

               Cow position:
               
               

               Alignm length:
               110
               

               Alignm identity:
               89
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-508
               

               Cow position:
               
               

               Alignm length:
               123
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-509
               

               Cow position:
               
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               386-529
               

               Cow position:
               
               

               Alignm length:
               144
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               386-544
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               386-721
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 190
               

               Conread position:
               388-503
               

               Cow position:
               
               

               Alignm length:
               116
               

               Alignm identity:
               95
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               391-538
               

               Cow position:
               
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               597-948
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               31, 68
               

               Conread position:
               715-947
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               11, 48
               

               Conread position:
               736-944
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               823-947
               

               Cow position:
               
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               7, 42
               

               Conread position:
               825-942
               

               Cow position:
               
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               76, 43
               

               Conread position:
               825-947
               

               Cow position:
               
               

               Alignm length:
               124
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               76, 43
               

               Conread position:
               825-947
               

               Cow position:
               
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               76, 20
               

               Conread position:
               830-947
               

               Cow position:
               
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               71, 38
               

               Conread position:
               830-947
               

               Cow position:
               
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               71, 37
               

               Conread position:
               834-947
               

               Cow position:
               
               

               Alignm length:
               115
               

               Alignm identity:
               96
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 33
               
Show alignments to all cow chromosomes.