Cow genome map
| Conread name: | Ss1.1-ruio34_e2.5 |
| Conread position: | 1-136 |
| Cow position: | chr27:13897902-13898038 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-357 |
| Cow position: | chr27:25999347-25999015 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 1-358 |
| Cow position: | chr27:25805173-25804830 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 1-375 |
| Cow position: | chr27:27051372-27051748 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 128 |
| Conread position: | 1-376 |
| Cow position: | chr27:26324522-26324887 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 122 |
| Conread position: | 1-377 |
| Cow position: | chr27:892920-893280 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 76 |
| Conread position: | 1-377 |
| Cow position: | chr27:16439038-16439398 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 78 |
| Conread position: | 1-377 |
| Cow position: | chr27:25002819-25002463 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 75 |
| Conread position: | 1-379 |
| Cow position: | chr27:26227008-26227368 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-380 |
| Cow position: | chr27:15278357-15277993 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 126 |
| Conread position: | 1-381 |
| Cow position: | chr27:16034684-16034317 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 21 |
| Conread position: | 1-381 |
| Cow position: | chr27:23334871-23335239 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 122 |
| Conread position: | 1-381 |
| Cow position: | chr27:26556268-26555927 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 1-381 |
| Cow position: | chr27:27662602-27662977 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 139 |
| Conread position: | 1-384 |
| Cow position: | chr27:15541036-15541409 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 128 |
| Conread position: | 1-409 |
| Cow position: | chr27:2364459-2364857 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 127 |
| Conread position: | 1-417 |
| Cow position: | chr27:9993493-9993088 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 38 |
| Conread position: | 1-417 |
| Cow position: | chr27:14460748-14460339 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 53 |
| Conread position: | 3-381 |
| Cow position: | chr27:1209062-1209429 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 14 |
| Conread position: | 6-350 |
| Cow position: | chr27:3996663-3996330 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 174, 79 |
| Conread position: | 120-417 |
| Cow position: | chr27:16432239-16432537 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 138-287 |
| Cow position: | chr27:8561422-8561574 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 142-381 |
| Cow position: | chr27:28890565-28890802 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 215, 49 |
| Conread position: | 178-381 |
| Cow position: | chr27:27753323-27753119 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 383-503 |
| Cow position: | chr27:28078586-28078706 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-509 |
| Cow position: | chr27:15277930-15277808 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 384-509 |
| Cow position: | chr27:16439468-16439593 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-509 |
| Cow position: | chr27:25002396-25002270 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 384-509 |
| Cow position: | chr27:27051824-27051949 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-947 |
| Cow position: | chr27:26555863-26555288 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 88 |
| Conread position: | 386-461 |
| Cow position: | chr27:2364892-2364968 (view UCSC Genome Browser custom track) |
| Alignm length: | 77 |
| Alignm identity: | 71 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 386-474 |
| Cow position: | chr27:23335321-23335409 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 76 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-494 |
| Cow position: | chr27:26324957-26325065 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-495 |
| Cow position: | chr27:893349-893458 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-495 |
| Cow position: | chr27:1209493-1209602 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-508 |
| Cow position: | chr27:15541471-15541593 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-509 |
| Cow position: | chr27:9993063-9992938 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 386-529 |
| Cow position: | chr27:27753054-27752912 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 386-544 |
| Cow position: | chr27:14460314-14460153 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 386-721 |
| Cow position: | chr27:8561683-8562019 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 190 |
| Conread position: | 388-503 |
| Cow position: | chr27:16034250-16034135 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 391-538 |
| Cow position: | chr27:16432563-16432709 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 597-948 |
| Cow position: | chr27:1138415-1138764 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 715-947 |
| Cow position: | chr27:27196490-27196256 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 736-944 |
| Cow position: | chr27:6013961-6014172 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 823-947 |
| Cow position: | chr27:9329979-9330101 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 825-942 |
| Cow position: | chr27:15638112-15637995 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 825-947 |
| Cow position: | chr27:9992945-9992823 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 825-947 |
| Cow position: | chr27:14460198-14460077 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 20 |
| Conread position: | 830-947 |
| Cow position: | chr27:893470-893587 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 830-947 |
| Cow position: | chr27:1209614-1209731 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 37 |
| Conread position: | 834-947 |
| Cow position: | chr27:23335430-23335543 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 33 |
Show alignments to all cow chromosomes.