Cow genome map

Conread name: Ss1.1-ruio34_e2.5

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 179
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 122, 0

Conread position: 1-253
Cow position:
Alignm length: 253
Alignm identity: 182
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 127, 0

Conread position: 1-286
Cow position:
Alignm length: 286
Alignm identity: 211
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 81, 0

Conread position: 1-295
Cow position:
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 122, 0

Conread position: 1-350
Cow position:
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 82

Conread position: 1-377
Cow position:
Alignm length: 378
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 50

Conread position: 1-377
Cow position:
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 124

Conread position: 1-377
Cow position:
Alignm length: 379
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 127

Conread position: 1-379
Cow position:
Alignm length: 381
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 78

Conread position: 1-380
Cow position:
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 76

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 41

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 68

Conread position: 1-381
Cow position:
Alignm length: 384
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 122

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 122

Conread position: 1-381
Cow position:
Alignm length: 387
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 78

Conread position: 1-381
Cow position:
Alignm length: 389
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 40

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 100

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 122

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 68

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 129

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 124

Conread position: 1-381
Cow position:
Alignm length: 384
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 127

Conread position: 1-384
Cow position:
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-408
Cow position:
Alignm length: 416
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 110

Conread position: 1-409
Cow position:
Alignm length: 415
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 130

Conread position: 1-417
Cow position:
Alignm length: 422
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 122

Conread position: 1-418
Cow position:
Alignm length: 423
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-451
Cow position:
Alignm length: 455
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 76

Conread position: 1-878
Cow position:
Alignm length: 895
Alignm identity: 619
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 37

Conread position: 2-373
Cow position:
Alignm length: 373
Alignm identity: 244
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 355, 98

Conread position: 2-381
Cow position:
Alignm length: 381
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 121

Conread position: 3-381
Cow position:
Alignm length: 383
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 123

Conread position: 3-381
Cow position:
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 63

Conread position: 5-409
Cow position:
Alignm length: 411
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 29

Conread position: 5-417
Cow position:
Alignm length: 418
Alignm identity: 269
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 351, 64

Conread position: 10-381
Cow position:
Alignm length: 374
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 68

Conread position: 20-380
Cow position:
Alignm length: 362
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 105

Conread position: 21-250
Cow position:
Alignm length: 231
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 153, 102

Conread position: 21-380
Cow position:
Alignm length: 361
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 102

Conread position: 21-381
Cow position:
Alignm length: 362
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 102

Conread position: 22-277
Cow position:
Alignm length: 256
Alignm identity: 189
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 74, 0

Conread position: 47-381
Cow position:
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 58

Conread position: 73-381
Cow position:
Alignm length: 310
Alignm identity: 218
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 284, 55

Conread position: 130-434
Cow position:
Alignm length: 314
Alignm identity: 208
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 166, 59

Conread position: 137-380
Cow position:
Alignm length: 257
Alignm identity: 187
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 15, 198

Conread position: 140-381
Cow position:
Alignm length: 243
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 54

Conread position: 157-357
Cow position:
Alignm length: 201
Alignm identity: 145
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 158-384
Cow position:
Alignm length: 228
Alignm identity: 168
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 199, 0

Conread position: 181-381
Cow position:
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 13, 0

Conread position: 200-409
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 71

Conread position: 210-408
Cow position:
Alignm length: 202
Alignm identity: 150
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 147, 95

Conread position: 355-943
Cow position:
Alignm length: 591
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 271

Conread position: 383-508
Cow position:
Alignm length: 128
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 39

Conread position: 384-502
Cow position:
Alignm length: 119
Alignm identity: 97
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 105, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 104
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 106
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 384-510
Cow position:
Alignm length: 127
Alignm identity: 107
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 114, 0

Conread position: 384-544
Cow position:
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 165

Conread position: 384-544
Cow position:
Alignm length: 162
Alignm identity: 131
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 131, 153

Conread position: 385-542
Cow position:
Alignm length: 160
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 120, 22

Conread position: 385-591
Cow position:
Alignm length: 209
Alignm identity: 145
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 115

Conread position: 385-599
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 27

Conread position: 385-619
Cow position:
Alignm length: 237
Alignm identity: 184
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 191, 70

Conread position: 385-621
Cow position:
Alignm length: 238
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 223, 113

Conread position: 385-723
Cow position:
Alignm length: 352
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 110

Conread position: 385-945
Cow position:
Alignm length: 570
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 100

Conread position: 385-947
Cow position:
Alignm length: 572
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 74

Conread position: 385-947
Cow position:
Alignm length: 584
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 208

Conread position: 385-948
Cow position:
Alignm length: 579
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 446

Conread position: 386-482
Cow position:
Alignm length: 97
Alignm identity: 83
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-484
Cow position:
Alignm length: 99
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-495
Cow position:
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 97
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 100
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 100
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 97
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 101
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 96
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 101
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 86, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 102
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 105
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 101
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 105
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 103
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 386-531
Cow position:
Alignm length: 147
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 36

Conread position: 386-532
Cow position:
Alignm length: 147
Alignm identity: 118
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 386-544
Cow position:
Alignm length: 162
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 137, 50

Conread position: 387-509
Cow position:
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 387-544
Cow position:
Alignm length: 159
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 143, 0

Conread position: 388-508
Cow position:
Alignm length: 121
Alignm identity: 101
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 388-599
Cow position:
Alignm length: 213
Alignm identity: 145
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 151, 0

Conread position: 389-509
Cow position:
Alignm length: 121
Alignm identity: 92
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 394-595
Cow position:
Alignm length: 203
Alignm identity: 162
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 143, 157

Conread position: 396-538
Cow position:
Alignm length: 148
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 134

Conread position: 411-563
Cow position:
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 452-873
Cow position:
Alignm length: 432
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 106

Conread position: 512-855
Cow position:
Alignm length: 360
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 38

Conread position: 597-811
Cow position:
Alignm length: 226
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 30, 0

Conread position: 660-895
Cow position:
Alignm length: 248
Alignm identity: 186
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 65, 239

Conread position: 666-947
Cow position:
Alignm length: 297
Alignm identity: 203
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 45

Conread position: 705-948
Cow position:
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 713-947
Cow position:
Alignm length: 243
Alignm identity: 184
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 12, 122

Conread position: 728-947
Cow position:
Alignm length: 224
Alignm identity: 175
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 21, 101

Conread position: 736-913
Cow position:
Alignm length: 180
Alignm identity: 142
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 39, 92

Conread position: 737-945
Cow position:
Alignm length: 214
Alignm identity: 154
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 25, 128

Conread position: 739-948
Cow position:
Alignm length: 213
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 11

Conread position: 740-947
Cow position:
Alignm length: 213
Alignm identity: 148
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 822-947
Cow position:
Alignm length: 127
Alignm identity: 105
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 79, 45

Conread position: 825-945
Cow position:
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 38

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 76, 38

Conread position: 825-947
Cow position:
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 43

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 100
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 101
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 100
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 76, 36

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 76, 38

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 76, 38

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 36

Conread position: 825-947
Cow position:
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 43

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 77, 43

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 100
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 76, 42

Conread position: 830-948
Cow position:
Alignm length: 121
Alignm identity: 95
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 25, 14

Conread position: 834-947
Cow position:
Alignm length: 115
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 34

Conread position: 835-947
Cow position:
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 33

Show alignments to all cow chromosomes.