Cow genome map
| Conread name: | Ss1.1-uFN-UNL-P-FN-cp-e-12-0-UNL.s1.3 |
| Conread position: | 1-465 |
| Cow position: | chr13:39984434-39984899 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 1-513 |
| Cow position: | chr13:39984350-39984863 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 2-511 |
| Cow position: | chr13:24162854-24163364 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 172, 270 |
| Conread position: | 2-512 |
| Cow position: | chr13:22125380-22125891 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 2-513 |
| Cow position: | chr13:24163106-24163618 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 322 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 97, 110 |
| Conread position: | 2-537 |
| Cow position: | chr13:22125128-22125664 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 270 |
| Conread position: | 3-492 |
| Cow position: | chr13:56317295-56317777 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 101 |
| Conread position: | 3-512 |
| Cow position: | chr13:39984184-39984694 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 3-563 |
| Cow position: | chr13:39984268-39984829 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 159 |
| Conread position: | 4-559 |
| Cow position: | chr13:39983933-39984489 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 159 |
| Conread position: | 4-563 |
| Cow position: | chr13:39984101-39984661 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 4-563 |
| Cow position: | chr13:56292664-56292109 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 116 |
| Conread position: | 5-332 |
| Cow position: | chr13:39930850-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 80, 102 |
| Conread position: | 5-511 |
| Cow position: | chr13:22125215-22125722 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 168, 271 |
| Conread position: | 5-511 |
| Cow position: | chr13:24162941-24163448 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 168, 271 |
| Conread position: | 5-543 |
| Cow position: | chr13:56292321-56291792 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 107 |
| Conread position: | 5-559 |
| Cow position: | chr13:24162689-24163244 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 365 |
| Conread position: | 12-542 |
| Cow position: | chr13:22124886-22125417 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 100 |
| Conread position: | 12-559 |
| Cow position: | chr13:56333505-56334053 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 161, 191 |
| Conread position: | 19-544 |
| Cow position: | chr13:22124725-22125251 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 99 |
| Conread position: | 21-513 |
| Cow position: | chr13:56333766-56334268 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 151, 251 |
| Conread position: | 21-559 |
| Cow position: | chr13:22124979-22125518 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 349 |
| Conread position: | 23-393 |
| Cow position: | chr13:56292146-56291772 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 147, 249 |
| Conread position: | 33-500 |
| Cow position: | chr13:39930710-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 33-542 |
| Cow position: | chr13:24162633-24163143 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 33-544 |
| Cow position: | chr13:24162465-24162977 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 85 |
| Conread position: | 33-559 |
| Cow position: | chr13:24162801-24163328 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 321 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 140, 499 |
| Conread position: | 33-559 |
| Cow position: | chr13:56333694-56334230 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 34-544 |
| Cow position: | chr13:39930627-39931138 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 36-563 |
| Cow position: | chr13:56292547-56292025 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 332 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 63, 36 |
| Conread position: | 37-543 |
| Cow position: | chr13:56292715-56292202 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 133, 202 |
| Conread position: | 39-428 |
| Cow position: | chr13:56333952-56334349 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 45-539 |
| Cow position: | chr13:56333874-56334376 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 127, 336 |
| Conread position: | 65-559 |
| Cow position: | chr13:24162413-24162908 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 65-559 |
| Cow position: | chr13:39930574-39931069 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 207 |
| Conread position: | 82-563 |
| Cow position: | chr13:39983927-39984409 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 163 |
| Conread position: | 117-465 |
| Cow position: | chr13:56317930-56318285 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 161-558 |
| Cow position: | chr13:56292333-56291946 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 126 |
| Conread position: | 162-511 |
| Cow position: | chr13:56292836-56292492 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 61 |
| Conread position: | 169-513 |
| Cow position: | chr13:56317378-56317714 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 184, 99 |
| Conread position: | 173-542 |
| Cow position: | chr13:22124712-22125081 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 243, 253 |
| Conread position: | 177-564 |
| Cow position: | chr13:56333503-56333890 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 200-500 |
| Cow position: | chr13:56317930-56318230 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 201-513 |
| Cow position: | chr13:56317852-56318159 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 162, 59 |
| Conread position: | 218-562 |
| Cow position: | chr13:39983812-39984156 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-559 |
| Cow position: | chr13:22124687-22125014 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 116, 127 |
| Conread position: | 290-543 |
| Cow position: | chr13:56292877-56292628 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 107 |
Show alignments to all cow chromosomes.