Cow genome map
| Conread name: | Ss1.1-uFN-UNL-P-FN-cp-e-12-0-UNL.s1.3 |
| Conread position: | 1-392 |
| Cow position: | chr17:22589565-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 186, 202 |
| Conread position: | 1-485 |
| Cow position: | chr17:44467893-44468378 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 287 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 1-491 |
| Cow position: | chr17:22498942-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 303 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 170, 406 |
| Conread position: | 1-522 |
| Cow position: | chr17:41441090-41440568 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 104 |
| Conread position: | 1-522 |
| Cow position: | chr17:44467389-44467911 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 1-523 |
| Cow position: | chr17:22499110-22498587 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 1-549 |
| Cow position: | chr17:44467725-44468274 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 330 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 171, 527 |
| Conread position: | 1-552 |
| Cow position: | chr17:41440754-41440202 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 1-559 |
| Cow position: | chr17:22552987-22552428 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 117 |
| Conread position: | 1-559 |
| Cow position: | chr17:41441006-41440447 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 532 |
| Conread position: | 3-499 |
| Cow position: | chr17:22551977-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 269 |
| Conread position: | 3-510 |
| Cow position: | chr17:22473453-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 3-559 |
| Cow position: | chr17:22552229-22551672 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 3-562 |
| Cow position: | chr17:22552061-22551501 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 3-563 |
| Cow position: | chr17:22552565-22552004 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 451 |
| Conread position: | 3-563 |
| Cow position: | chr17:22552817-22552256 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 451 |
| Conread position: | 3-563 |
| Cow position: | chr17:22552901-22552340 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 3-563 |
| Cow position: | chr17:22590151-22589590 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 269 |
| Conread position: | 4-563 |
| Cow position: | chr17:22499275-22498715 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 5-335 |
| Cow position: | chr17:22452008-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 164, 174 |
| Conread position: | 5-559 |
| Cow position: | chr17:22590065-22589510 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 267 |
| Conread position: | 5-563 |
| Cow position: | chr17:22553067-22552508 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 267 |
| Conread position: | 6-559 |
| Cow position: | chr17:22499189-22498635 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 90 |
| Conread position: | 11-572 |
| Cow position: | chr17:22452254-22451692 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 95 |
| Conread position: | 13-503 |
| Cow position: | chr17:22452170-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 338 |
| Conread position: | 22-558 |
| Cow position: | chr17:22452327-22451790 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 22-563 |
| Cow position: | chr17:22452411-22451869 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 432 |
| Conread position: | 24-259 |
| Cow position: | chr17:22473726-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 25-563 |
| Cow position: | chr17:22590297-22589758 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 32-427 |
| Cow position: | chr17:22452065-22451669 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 86 |
| Conread position: | 33-524 |
| Cow position: | chr17:22589701-22589209 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 77 |
| Conread position: | 33-543 |
| Cow position: | chr17:22589953-22589442 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 393 |
| Conread position: | 33-558 |
| Cow position: | chr17:22499330-22498804 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 33-559 |
| Cow position: | chr17:44467673-44468200 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 33-563 |
| Cow position: | chr17:22473315-22473846 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 33-563 |
| Cow position: | chr17:22552283-22551752 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 79 |
| Conread position: | 33-563 |
| Cow position: | chr17:22552367-22551836 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 33-563 |
| Cow position: | chr17:22552619-22552088 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 36-556 |
| Cow position: | chr17:22553120-22552599 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 39-563 |
| Cow position: | chr17:22473405-22473931 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 45-520 |
| Cow position: | chr17:44467853-44468329 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 127, 227 |
| Conread position: | 45-563 |
| Cow position: | chr17:22589773-22589254 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 52-511 |
| Cow position: | chr17:44467355-44467816 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 275 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 53-550 |
| Cow position: | chr17:22499394-22498896 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 57-511 |
| Cow position: | chr17:41441118-41440663 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 48 |
| Conread position: | 108-563 |
| Cow position: | chr17:22590298-22589842 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 164 |
| Conread position: | 113-563 |
| Cow position: | chr17:22499418-22498967 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 120-563 |
| Cow position: | chr17:22553120-22552676 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 152 |
| Conread position: | 141-559 |
| Cow position: | chr17:41441118-41440697 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 31, 256 |
| Conread position: | 201-559 |
| Cow position: | chr17:22553122-22552764 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 109, 115 |
| Conread position: | 209-510 |
| Cow position: | chr17:22473243-22473541 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 315-563 |
| Cow position: | chr17:22473262-22473510 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.