Cow genome map
| Conread name: | Ss1.1-uFN-UNL-P-FN-cp-e-12-0-UNL.s1.3 |
| Conread position: | 1-268 |
| Cow position: | chr19:14948265-14947997 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 1-319 |
| Cow position: | chr19:23597399-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 96 |
| Conread position: | 1-385 |
| Cow position: | chr19:43570022-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 278 |
| Conread position: | 1-468 |
| Cow position: | chr19:43570106-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 373 |
| Conread position: | 1-559 |
| Cow position: | chr19:23613382-23613941 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 1-563 |
| Cow position: | chr19:14940190-14940753 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 446 |
| Conread position: | 1-563 |
| Cow position: | chr19:14960107-14959560 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 289 |
| Conread position: | 1-563 |
| Cow position: | chr19:20677817-20678380 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 546 |
| Conread position: | 1-563 |
| Cow position: | chr19:23614054-23614617 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 438 |
| Conread position: | 1-564 |
| Cow position: | chr19:14959855-14959307 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-392 |
| Cow position: | chr19:23614728-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 184, 269 |
| Conread position: | 3-429 |
| Cow position: | chr19:23597317-23597743 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 103 |
| Conread position: | 3-467 |
| Cow position: | chr19:23597233-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 446 |
| Conread position: | 3-478 |
| Cow position: | chr19:23650010-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 424 |
| Conread position: | 3-510 |
| Cow position: | chr19:20678239-20678744 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 469 |
| Conread position: | 3-549 |
| Cow position: | chr19:23649926-23650473 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 3-559 |
| Cow position: | chr19:14940444-14941001 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 529 |
| Conread position: | 3-563 |
| Cow position: | chr19:14940276-14940837 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 3-563 |
| Cow position: | chr19:14959533-14958987 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 226 |
| Conread position: | 3-563 |
| Cow position: | chr19:20677903-20678464 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 294 |
| Conread position: | 3-563 |
| Cow position: | chr19:23597065-23597626 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 110 |
| Conread position: | 3-563 |
| Cow position: | chr19:23649506-23650067 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 103 |
| Conread position: | 4-514 |
| Cow position: | chr19:20635512-20635001 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 91 |
| Conread position: | 4-549 |
| Cow position: | chr19:43570187-43569645 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 4-558 |
| Cow position: | chr19:20677319-20677871 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 339 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 167, 42 |
| Conread position: | 4-563 |
| Cow position: | chr19:23649675-23650235 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 528 |
| Conread position: | 6-559 |
| Cow position: | chr19:14960352-14959800 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 203 |
| Conread position: | 6-559 |
| Cow position: | chr19:23649845-23650399 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 88 |
| Conread position: | 11-311 |
| Cow position: | chr19:14959120-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 11-564 |
| Cow position: | chr19:14960263-14959713 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 107 |
| Conread position: | 12-353 |
| Cow position: | chr19:14948338-14947996 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 94 |
| Conread position: | 16-563 |
| Cow position: | chr19:23613649-23614197 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 516 |
| Conread position: | 19-421 |
| Cow position: | chr19:14948414-14948011 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 15 |
| Conread position: | 19-543 |
| Cow position: | chr19:23614576-23615101 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 19-563 |
| Cow position: | chr19:14940040-14940585 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 19-563 |
| Cow position: | chr19:14940376-14940921 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 19-563 |
| Cow position: | chr19:23614492-23615037 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 22-549 |
| Cow position: | chr19:23597168-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 22-563 |
| Cow position: | chr19:14939960-14940501 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 15 |
| Conread position: | 22-563 |
| Cow position: | chr19:23596834-23597374 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 198 |
| Conread position: | 23-510 |
| Cow position: | chr19:20678174-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 157 |
| Conread position: | 23-564 |
| Cow position: | chr19:20635577-20635035 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 180 |
| Conread position: | 25-461 |
| Cow position: | chr19:23614666-23615103 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 155 |
| Conread position: | 25-517 |
| Cow position: | chr19:20677505-20677998 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 51 |
| Conread position: | 29-514 |
| Cow position: | chr19:14948488-14948003 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 90 |
| Conread position: | 30-558 |
| Cow position: | chr19:20677762-20678291 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 32-563 |
| Cow position: | chr19:20678016-20678548 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 86 |
| Conread position: | 33-510 |
| Cow position: | chr19:23613918-23614396 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 33-549 |
| Cow position: | chr19:14940558-14941075 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 33-559 |
| Cow position: | chr19:23614170-23614697 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 504 |
| Conread position: | 33-559 |
| Cow position: | chr19:23649368-23649895 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 33-559 |
| Cow position: | chr19:23649452-23649979 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 33-563 |
| Cow position: | chr19:23596930-23597458 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 33-563 |
| Cow position: | chr19:23613582-23614113 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 239 |
| Conread position: | 33-563 |
| Cow position: | chr19:23613834-23614365 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 33-563 |
| Cow position: | chr19:23614338-23614869 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 33-563 |
| Cow position: | chr19:43570242-43569713 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 512 |
| Conread position: | 38-514 |
| Cow position: | chr19:20635646-20635169 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 399 |
| Conread position: | 39-466 |
| Cow position: | chr19:14940648-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 39-563 |
| Cow position: | chr19:23614008-23614533 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 42-563 |
| Cow position: | chr19:14959578-14959071 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 63 |
| Conread position: | 44-511 |
| Cow position: | chr19:20677608-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 406 |
| Conread position: | 46-563 |
| Cow position: | chr19:23649297-23649815 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 54-559 |
| Cow position: | chr19:20678122-20678628 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 318 |
| Conread position: | 54-563 |
| Cow position: | chr19:23613351-23613861 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 393 |
| Conread position: | 55-562 |
| Cow position: | chr19:14960387-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 242 |
| Conread position: | 75-487 |
| Cow position: | chr19:14959711-14959300 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 76-522 |
| Cow position: | chr19:20677307-20677751 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 103-563 |
| Cow position: | chr19:14960423-14959964 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 274 |
| Conread position: | 106-563 |
| Cow position: | chr19:43570253-43569795 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 246 |
| Conread position: | 120-583 |
| Cow position: | chr19:14959257-14958797 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 138 |
| Conread position: | 121-558 |
| Cow position: | chr19:14948480-14948043 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 122-562 |
| Cow position: | chr19:20635646-20635205 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 428 |
| Conread position: | 133-559 |
| Cow position: | chr19:14960477-14960052 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 324 |
| Conread position: | 196-563 |
| Cow position: | chr19:14948488-14948122 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 75 |
| Conread position: | 201-542 |
| Cow position: | chr19:43570398-43570068 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 220-559 |
| Cow position: | chr19:23613350-23613689 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 295, 302 |
| Conread position: | 233-563 |
| Cow position: | chr19:43570450-43570131 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 288-563 |
| Cow position: | chr19:14960492-14960214 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 291-563 |
| Cow position: | chr19:20635645-20635372 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 6, 81 |
| Conread position: | 296-565 |
| Cow position: | chr19:14916041-14916306 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 259, 94 |
| Conread position: | 303-556 |
| Cow position: | chr19:14915962-14916216 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 166 |
Show alignments to all cow chromosomes.