Cow genome map
| Conread name: | Ss1.1-uFN-UNL-P-FN-cp-e-12-0-UNL.s1.3 |
| Conread position: | 1-233 |
| Cow position: | chr23:25723927-25723696 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 101, 112 |
| Conread position: | 1-321 |
| Cow position: | chr23:24546962-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 93, 103 |
| Conread position: | 1-467 |
| Cow position: | chr23:25626566-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 20 |
| Conread position: | 1-479 |
| Cow position: | chr23:25660267-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 108 |
| Conread position: | 1-549 |
| Cow position: | chr23:24536013-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 2-267 |
| Cow position: | chr23:24560353-24560088 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 167, 223 |
| Conread position: | 3-397 |
| Cow position: | chr23:25626649-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 308 |
| Conread position: | 3-433 |
| Cow position: | chr23:24535843-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 103 |
| Conread position: | 3-558 |
| Cow position: | chr23:24560688-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 3-559 |
| Cow position: | chr23:24560604-24560045 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 481 |
| Conread position: | 3-559 |
| Cow position: | chr23:24639502-24640059 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 451 |
| Conread position: | 3-563 |
| Cow position: | chr23:24560772-24560211 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 3-563 |
| Cow position: | chr23:25626316-25626874 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 267 |
| Conread position: | 3-571 |
| Cow position: | chr23:24547212-24546644 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 557 |
| Conread position: | 4-549 |
| Cow position: | chr23:24522533-24521972 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 368 |
| Conread position: | 5-460 |
| Cow position: | chr23:25698536-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 6-390 |
| Cow position: | chr23:24654070-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 6-559 |
| Cow position: | chr23:24639337-24639891 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 100 |
| Conread position: | 10-513 |
| Cow position: | chr23:24522692-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 82 |
| Conread position: | 11-398 |
| Cow position: | chr23:25724085-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 97 |
| Conread position: | 11-558 |
| Cow position: | chr23:24560848-24560300 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 131 |
| Conread position: | 11-566 |
| Cow position: | chr23:25660193-25660749 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 193 |
| Conread position: | 15-543 |
| Cow position: | chr23:25698610-25698081 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 302 |
| Conread position: | 16-550 |
| Cow position: | chr23:25626413-25626945 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 126 |
| Conread position: | 19-491 |
| Cow position: | chr23:24626274-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 19-563 |
| Cow position: | chr23:24639266-24639811 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 329 |
| Conread position: | 24-549 |
| Cow position: | chr23:25626001-25626527 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 80 |
| Conread position: | 24-559 |
| Cow position: | chr23:25626253-25626786 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 134 |
| Conread position: | 25-466 |
| Cow position: | chr23:25724153-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 31-559 |
| Cow position: | chr23:24536067-24535538 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 33-497 |
| Cow position: | chr23:24639616-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 63 |
| Conread position: | 33-563 |
| Cow position: | chr23:24547266-24546735 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 33-563 |
| Cow position: | chr23:25626094-25626622 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 482 |
| Conread position: | 44-563 |
| Cow position: | chr23:24522824-24522309 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 37 |
| Conread position: | 45-563 |
| Cow position: | chr23:24560896-24560379 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 47-559 |
| Cow position: | chr23:25660145-25660658 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 478 |
| Conread position: | 49-558 |
| Cow position: | chr23:24547334-24546824 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 45 |
| Conread position: | 54-542 |
| Cow position: | chr23:25626535-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 75-549 |
| Cow position: | chr23:24522111-24521654 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 142 |
| Conread position: | 75-549 |
| Cow position: | chr23:25698634-25698159 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 307 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 103-563 |
| Cow position: | chr23:24626202-24626651 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 35 |
| Conread position: | 117-555 |
| Cow position: | chr23:25626010-25626449 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 117-558 |
| Cow position: | chr23:24522669-24522230 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 59 |
| Conread position: | 132-543 |
| Cow position: | chr23:24626303-24626715 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 132-563 |
| Cow position: | chr23:24536050-24535618 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 132-563 |
| Cow position: | chr23:25660146-25660578 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 133-559 |
| Cow position: | chr23:24547334-24546907 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 383 |
| Conread position: | 134-563 |
| Cow position: | chr23:25625945-25626373 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 146-494 |
| Cow position: | chr23:24654042-24654391 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 148-549 |
| Cow position: | chr23:25724116-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 161-563 |
| Cow position: | chr23:25698632-25698229 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 192-563 |
| Cow position: | chr23:24536074-24535702 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 200-549 |
| Cow position: | chr23:25698676-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 328, 314 |
| Conread position: | 200-559 |
| Cow position: | chr23:24560910-24560551 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 204-559 |
| Cow position: | chr23:25660134-25660490 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 245 |
| Conread position: | 204-559 |
| Cow position: | chr23:25724143-25723788 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 319, 324 |
| Conread position: | 220-563 |
| Cow position: | chr23:24547330-24546987 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 295 |
| Conread position: | 221-564 |
| Cow position: | chr23:24522814-24522476 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 229-564 |
| Cow position: | chr23:24654042-24654377 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 284 |
| Conread position: | 230-563 |
| Cow position: | chr23:24639226-24639559 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 35, 41 |
| Conread position: | 298-563 |
| Cow position: | chr23:25660145-25660410 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 224, 230 |
| Conread position: | 305-563 |
| Cow position: | chr23:24639217-24639475 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 316-564 |
| Cow position: | chr23:25625958-25626206 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 384-563 |
| Cow position: | chr23:24547334-24547155 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 136, 130 |
Show alignments to all cow chromosomes.