Cow genome map
| Conread name: | Ss1.1-uFN-UNL-P-FN-cp-e-12-0-UNL.s1.3 |
| Conread position: | 1-321 |
| Cow position: | chr28:34696279-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 106 |
| Conread position: | 1-408 |
| Cow position: | chr28:7810538-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 1-445 |
| Cow position: | chr28:34696111-34696556 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 1-467 |
| Cow position: | chr28:7757867-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 271 |
| Conread position: | 3-563 |
| Cow position: | chr28:7757617-7758178 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 101 |
| Conread position: | 4-388 |
| Cow position: | chr28:7758526-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 162, 251 |
| Conread position: | 4-481 |
| Cow position: | chr28:9253137-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 108 |
| Conread position: | 4-491 |
| Cow position: | chr28:7810466-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 62 |
| Conread position: | 4-563 |
| Cow position: | chr28:9298935-9299479 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 349 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 168, 59 |
| Conread position: | 5-312 |
| Cow position: | chr28:33210347-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 5-360 |
| Cow position: | chr28:33210263-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 5-511 |
| Cow position: | chr28:11333850-11333349 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 171, 382 |
| Conread position: | 6-543 |
| Cow position: | chr28:7757788-7758326 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 100 |
| Conread position: | 6-543 |
| Cow position: | chr28:7758124-7758646 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 192 |
| Conread position: | 11-559 |
| Cow position: | chr28:9289797-9290338 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 231, 85 |
| Conread position: | 19-402 |
| Cow position: | chr28:9290301-9290683 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 19-438 |
| Cow position: | chr28:11333584-11333162 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 154, 118 |
| Conread position: | 19-481 |
| Cow position: | chr28:9299272-9299728 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 19-511 |
| Cow position: | chr28:7757717-7758210 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 253 |
| Conread position: | 19-543 |
| Cow position: | chr28:9253068-9253593 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 87 |
| Conread position: | 19-555 |
| Cow position: | chr28:7757465-7758002 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 253 |
| Conread position: | 19-559 |
| Cow position: | chr28:9290053-9290588 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 19-559 |
| Cow position: | chr28:9299032-9299559 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 154 |
| Conread position: | 19-563 |
| Cow position: | chr28:7757549-7758094 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 19-563 |
| Cow position: | chr28:7810397-7810933 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 19-564 |
| Cow position: | chr28:9298617-9299158 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 49 |
| Conread position: | 21-549 |
| Cow position: | chr28:11333750-11333221 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 283 |
| Conread position: | 22-510 |
| Cow position: | chr28:7758224-7758697 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 110 |
| Conread position: | 22-542 |
| Cow position: | chr28:7757384-7757905 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 250 |
| Conread position: | 22-559 |
| Cow position: | chr28:7758056-7758578 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 250 |
| Conread position: | 24-392 |
| Cow position: | chr28:7758462-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 159, 248 |
| Conread position: | 24-513 |
| Cow position: | chr28:9290142-9290626 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 66 |
| Conread position: | 27-563 |
| Cow position: | chr28:7810321-7810849 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 207 |
| Conread position: | 32-563 |
| Cow position: | chr28:11333907-11333381 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 257 |
| Conread position: | 33-481 |
| Cow position: | chr28:7758387-7758835 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 33-504 |
| Cow position: | chr28:9298713-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 102 |
| Conread position: | 33-559 |
| Cow position: | chr28:9298880-9299391 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 327 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 36-504 |
| Cow position: | chr28:7758307-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 13 |
| Conread position: | 36-513 |
| Cow position: | chr28:34695726-34696204 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 36-559 |
| Cow position: | chr28:11334071-11333547 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 390 |
| Conread position: | 37-559 |
| Cow position: | chr28:11334154-11333631 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 43-563 |
| Cow position: | chr28:9253008-9253529 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 229 |
| Conread position: | 45-522 |
| Cow position: | chr28:34696071-34696549 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 45-559 |
| Cow position: | chr28:34695987-34696502 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 51-511 |
| Cow position: | chr28:34679561-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 121, 20 |
| Conread position: | 51-542 |
| Cow position: | chr28:9299218-9299707 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 352 |
| Conread position: | 54-453 |
| Cow position: | chr28:33210228-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 55-523 |
| Cow position: | chr28:34695829-34696298 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 299 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 61-505 |
| Cow position: | chr28:34673362-34673807 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 103-563 |
| Cow position: | chr28:9252899-9253361 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 170 |
| Conread position: | 114-563 |
| Cow position: | chr28:7757392-7757842 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 423 |
| Conread position: | 117-489 |
| Cow position: | chr28:11333906-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 310 |
| Conread position: | 122-514 |
| Cow position: | chr28:34679574-34679180 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 132-559 |
| Cow position: | chr28:9298561-9298987 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 103 |
| Conread position: | 140-543 |
| Cow position: | chr28:7757334-7757738 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 132 |
| Conread position: | 161-563 |
| Cow position: | chr28:7757195-7757590 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 200-490 |
| Cow position: | chr28:7810252-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 200-563 |
| Cow position: | chr28:11334242-11333879 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 204-563 |
| Cow position: | chr28:11334154-11333795 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-555 |
| Cow position: | chr28:33210223-33210562 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 219-514 |
| Cow position: | chr28:34673353-34673648 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 198, 207 |
| Conread position: | 305-563 |
| Cow position: | chr28:33210228-33210486 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 112, 121 |
| Conread position: | 324-543 |
| Cow position: | chr28:7810283-7810502 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.