Cow genome map

Conread name: Ss1.1-uFN-UNL-P-FN-cp-e-12-0-UNL.s1.3

Conread position: 1-361
Cow position: chr6:49429183-49429542 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 241
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 155, 160

Conread position: 1-506
Cow position: chr6:49396492-49396998 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 72

Conread position: 1-513
Cow position: chr6:49429015-49429526 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 107

Conread position: 1-559
Cow position: chr6:49428259-49428818 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 104

Conread position: 1-559
Cow position: chr6:49428511-49429070 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 27

Conread position: 1-563
Cow position: chr6:49340855-49341418 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 5-502
Cow position: chr6:49362458-49362948 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 309
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 23

Conread position: 5-549
Cow position: chr6:49396166-49396705 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 65

Conread position: 5-558
Cow position: chr6:49396412-49396966 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 91

Conread position: 5-559
Cow position: chr6:49428599-49429154 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 23

Conread position: 5-563
Cow position: chr6:49396328-49396887 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 236

Conread position: 6-563
Cow position: chr6:49340524-49341082 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 197

Conread position: 12-513
Cow position: chr6:49340362-49340864 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 94

Conread position: 19-563
Cow position: chr6:49396258-49396803 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 518

Conread position: 21-563
Cow position: chr6:49340791-49341334 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 21-564
Cow position: chr6:49428951-49429495 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 97

Conread position: 24-563
Cow position: chr6:49428785-49429326 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 95

Conread position: 29-563
Cow position: chr6:49396106-49396635 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 76

Conread position: 32-522
Cow position: chr6:49428374-49428865 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 33-507
Cow position: chr6:49362402-49362865 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 306
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 85, 73

Conread position: 33-513
Cow position: chr6:49340971-49341451 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 469

Conread position: 33-558
Cow position: chr6:49340635-49341161 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 75

Conread position: 33-563
Cow position: chr6:49340467-49340998 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 244

Conread position: 45-550
Cow position: chr6:49362330-49362824 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 321
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 73, 55

Conread position: 46-559
Cow position: chr6:49395785-49396295 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 310
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 17, 71

Conread position: 51-513
Cow position: chr6:49428224-49428688 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 67

Conread position: 100-558
Cow position: chr6:49340366-49340825 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 108-563
Cow position: chr6:49340134-49340578 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 281
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 69, 220

Conread position: 127-530
Cow position: chr6:49362328-49362721 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 265
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 46, 302

Conread position: 128-549
Cow position: chr6:49428217-49428640 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 272
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 326

Conread position: 178-559
Cow position: chr6:49340361-49340742 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 32

Show alignments to all cow chromosomes.