Cow genome map
| Conread name: | Ss1.1-uFN-UNL-P-FN-cp-e-12-0-UNL.s1.3 |
| Conread position: | 1-543 |
| Cow position: | chr7:1439413-1439961 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 220 |
| Conread position: | 1-558 |
| Cow position: | chr7:42878909-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 111 |
| Conread position: | 3-447 |
| Cow position: | chr7:1438282-1438727 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 91, 101 |
| Conread position: | 3-478 |
| Cow position: | chr7:42878739-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 3-511 |
| Cow position: | chr7:18390279-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 446 |
| Conread position: | 3-517 |
| Cow position: | chr7:8278217-8278723 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 3-550 |
| Cow position: | chr7:42878823-42878275 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 3-558 |
| Cow position: | chr7:1014306-1014856 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 344 |
| Conread position: | 3-562 |
| Cow position: | chr7:3180318-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 479 |
| Conread position: | 3-563 |
| Cow position: | chr7:1014474-1015029 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 3-563 |
| Cow position: | chr7:1014804-1015365 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 92 |
| Conread position: | 3-563 |
| Cow position: | chr7:3179898-3180459 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 3-563 |
| Cow position: | chr7:8277377-8277938 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 3-563 |
| Cow position: | chr7:8324934-8325495 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 3-563 |
| Cow position: | chr7:42878991-42878430 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 353 |
| Conread position: | 3-563 |
| Cow position: | chr7:42879075-42878514 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 273 |
| Conread position: | 3-565 |
| Cow position: | chr7:1014390-1014947 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 257 |
| Conread position: | 4-277 |
| Cow position: | chr7:11600733-11600459 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 4-367 |
| Cow position: | chr7:18390448-18390812 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 4-563 |
| Cow position: | chr7:1439587-1440148 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 46 |
| Conread position: | 5-563 |
| Cow position: | chr7:3179732-3180291 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 281 |
| Conread position: | 6-473 |
| Cow position: | chr7:11600899-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 6 |
| Conread position: | 6-528 |
| Cow position: | chr7:12293384-12293907 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 165, 445 |
| Conread position: | 12-264 |
| Cow position: | chr7:1440016-1440269 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 12-267 |
| Cow position: | chr7:1015233-1015491 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 19-469 |
| Cow position: | chr7:8325706-8326160 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 295 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 149, 179 |
| Conread position: | 19-513 |
| Cow position: | chr7:8242847-8243343 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 19-563 |
| Cow position: | chr7:8277813-8278358 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 57 |
| Conread position: | 21-563 |
| Cow position: | chr7:11601136-11600593 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 22-432 |
| Cow position: | chr7:1439859-1440269 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 82 |
| Conread position: | 22-563 |
| Cow position: | chr7:11601051-11600509 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 23-488 |
| Cow position: | chr7:8277984-8278451 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 23-513 |
| Cow position: | chr7:8277900-8278392 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 96 |
| Conread position: | 23-563 |
| Cow position: | chr7:8243355-8243896 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 329 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 23-563 |
| Cow position: | chr7:8325037-8325579 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 258 |
| Conread position: | 23-564 |
| Cow position: | chr7:3180254-3180796 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 249 |
| Conread position: | 23-564 |
| Cow position: | chr7:8325541-8326084 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 328 |
| Conread position: | 24-437 |
| Cow position: | chr7:18390384-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 24-468 |
| Cow position: | chr7:11434679-11434240 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 137 |
| Conread position: | 24-563 |
| Cow position: | chr7:3180087-3180627 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 25-512 |
| Cow position: | chr7:8325627-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 25-558 |
| Cow position: | chr7:8325207-8325742 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 336 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 25-559 |
| Cow position: | chr7:18390133-18390668 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 29-513 |
| Cow position: | chr7:8242942-8243426 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 142, 249 |
| Conread position: | 29-563 |
| Cow position: | chr7:8324876-8325411 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 151 |
| Conread position: | 31-563 |
| Cow position: | chr7:1014748-1015281 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 241 |
| Conread position: | 33-510 |
| Cow position: | chr7:1015002-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 454 |
| Conread position: | 33-513 |
| Cow position: | chr7:28846486-28846967 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 140, 398 |
| Conread position: | 33-542 |
| Cow position: | chr7:18390225-18390735 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 43 |
| Conread position: | 33-558 |
| Cow position: | chr7:3180180-3180706 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 33-563 |
| Cow position: | chr7:42879129-42878598 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 239 |
| Conread position: | 33-563 |
| Cow position: | chr7:42879213-42878682 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 36-563 |
| Cow position: | chr7:1014669-1015197 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 38-512 |
| Cow position: | chr7:11600951-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 59 |
| Conread position: | 42-563 |
| Cow position: | chr7:8277584-8278106 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 331 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 121, 117 |
| Conread position: | 44-513 |
| Cow position: | chr7:1014929-1015399 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 242 |
| Conread position: | 45-559 |
| Cow position: | chr7:8277501-8278018 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 320 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 18, 144 |
| Conread position: | 45-563 |
| Cow position: | chr7:8243545-8244062 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 46-563 |
| Cow position: | chr7:11434824-11434313 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 126, 136 |
| Conread position: | 46-563 |
| Cow position: | chr7:42879284-42878766 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 48-559 |
| Cow position: | chr7:1014267-1014773 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 237 |
| Conread position: | 54-517 |
| Cow position: | chr7:8324817-8325281 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 117, 133 |
| Conread position: | 56-510 |
| Cow position: | chr7:8324735-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 60-525 |
| Cow position: | chr7:12293270-12293736 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 63-563 |
| Cow position: | chr7:3179706-3180207 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 64-555 |
| Cow position: | chr7:28846433-28846925 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 288 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 109, 434 |
| Conread position: | 83-563 |
| Cow position: | chr7:1438194-1438675 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 88, 353 |
| Conread position: | 106-559 |
| Cow position: | chr7:11601218-11600765 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 109-559 |
| Cow position: | chr7:42879305-42878854 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 167 |
| Conread position: | 116-467 |
| Cow position: | chr7:28846737-28847089 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 117-504 |
| Cow position: | chr7:1438312-1438700 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 117-510 |
| Cow position: | chr7:1439870-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 63, 101 |
| Conread position: | 117-563 |
| Cow position: | chr7:8277237-8277686 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 130-558 |
| Cow position: | chr7:18389986-18390415 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 121 |
| Conread position: | 140-563 |
| Cow position: | chr7:8324735-8325159 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 161-563 |
| Cow position: | chr7:42879421-42879018 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 162-524 |
| Cow position: | chr7:28846447-28846810 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 166-543 |
| Cow position: | chr7:1439410-1439794 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 8, 178 |
| Conread position: | 201-563 |
| Cow position: | chr7:42879296-42878934 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 256-513 |
| Cow position: | chr7:1014224-1014481 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-563 |
| Cow position: | chr7:11601193-11600929 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 308-559 |
| Cow position: | chr7:3179700-3179951 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.