Cow genome map
| Conread name: | Ss1.1-uFN-UNL-P-FN-cp-e-12-0-UNL.s1.3 |
| Conread position: | 1-320 |
| Cow position: | chrX:25324548-25324230 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 105, 117 |
| Conread position: | 1-558 |
| Cow position: | chrX:25324968-25324410 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 1-559 |
| Cow position: | chrX:25325556-25324997 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 1-563 |
| Cow position: | chrX:25325052-25324489 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 103 |
| Conread position: | 3-249 |
| Cow position: | chrX:14181189-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 3-323 |
| Cow position: | chrX:29044975-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 101, 93 |
| Conread position: | 3-563 |
| Cow position: | chrX:25325470-25324909 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 101 |
| Conread position: | 4-563 |
| Cow position: | chrX:25309840-25310400 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 518 |
| Conread position: | 18-402 |
| Cow position: | chrX:29045780-29045394 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 18-564 |
| Cow position: | chrX:25310022-25310569 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 78 |
| Conread position: | 19-563 |
| Cow position: | chrX:25309771-25310316 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 417 |
| Conread position: | 23-511 |
| Cow position: | chrX:13826727-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 23-514 |
| Cow position: | chrX:13826895-13826403 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 63, 84 |
| Conread position: | 24-445 |
| Cow position: | chrX:13826642-13826220 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 24-492 |
| Cow position: | chrX:25310112-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 24-510 |
| Cow position: | chrX:12627576-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 139, 93 |
| Conread position: | 24-513 |
| Cow position: | chrX:13826810-13826320 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 30-501 |
| Cow position: | chrX:14181414-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 70 |
| Conread position: | 30-563 |
| Cow position: | chrX:29045284-29044750 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 31-563 |
| Cow position: | chrX:25325778-25325245 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 75 |
| Conread position: | 32-491 |
| Cow position: | chrX:29045114-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 240 |
| Conread position: | 32-516 |
| Cow position: | chrX:12627417-12627900 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 139, 86 |
| Conread position: | 33-466 |
| Cow position: | chrX:14181327-14180893 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 138, 418 |
| Conread position: | 33-512 |
| Cow position: | chrX:25325104-25324624 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 239 |
| Conread position: | 33-542 |
| Cow position: | chrX:29045197-29044687 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 33-559 |
| Cow position: | chrX:25325188-25324661 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 239 |
| Conread position: | 33-563 |
| Cow position: | chrX:25309701-25310232 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 239 |
| Conread position: | 33-563 |
| Cow position: | chrX:25325272-25324741 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 33-564 |
| Cow position: | chrX:25324768-25324236 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 43-429 |
| Cow position: | chrX:29045838-29045451 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 45-563 |
| Cow position: | chrX:14181567-14181048 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 57 |
| Conread position: | 46-563 |
| Cow position: | chrX:25325595-25325077 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 226 |
| Conread position: | 108-563 |
| Cow position: | chrX:25309692-25310148 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 417 |
| Conread position: | 115-556 |
| Cow position: | chrX:14181413-14180971 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 124-512 |
| Cow position: | chrX:12627342-12627728 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 6 |
| Conread position: | 160-559 |
| Cow position: | chrX:29045320-29044922 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 162-522 |
| Cow position: | chrX:13826924-13826563 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 116 |
| Conread position: | 191-510 |
| Cow position: | chrX:12627325-12627643 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 70 |
| Conread position: | 191-563 |
| Cow position: | chrX:25325785-25325413 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 75, 80 |
| Conread position: | 201-563 |
| Cow position: | chrX:29045361-29045002 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 232, 29 |
| Conread position: | 210-563 |
| Cow position: | chrX:29045838-29045485 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 238-504 |
| Cow position: | chrX:13826930-13826665 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 99, 5 |
| Conread position: | 250-559 |
| Cow position: | chrX:25309667-25309976 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 60, 67 |
Show alignments to all cow chromosomes.