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Cow genome map

           
Conread name:
           
Ss1.1-unkn-AR074G10iTHYCG10R.5
        

               
Conread position:
               
48-300
               

               
Cow position:
               
chr11:71598048-71598302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
73-287
               

               
Cow position:
               
chr11:6639425-6639215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
73-341
               

               
Cow position:
               
chr11:36201849-36201580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 196
               

               
Conread position:
               
74-342
               

               
Cow position:
               
chr11:76369607-76369870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
74-357
               

               
Cow position:
               
chr11:31860796-31860509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
75-221
               

               
Cow position:
               
chr11:21728356-21728499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-245
               

               
Cow position:
               
chr11:2907606-2907781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
75-261
               

               
Cow position:
               
chr11:5226824-5227010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
5, 168
               

               
Conread position:
               
75-265
               

               
Cow position:
               
chr11:17083385-17083573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 119
               

               
Conread position:
               
75-276
               

               
Cow position:
               
chr11:8247104-8246902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-299
               

               
Cow position:
               
chr11:37991631-37991853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
75-314
               

               
Cow position:
               
chr11:31413366-31413127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
75-322
               

               
Cow position:
               
chr11:80583478-80583228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-325
               

               
Cow position:
               
chr11:24459668-24459919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-334
               

               
Cow position:
               
chr11:70619967-70619711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
75-337
               

               
Cow position:
               
chr11:79994905-79995167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-340
               

               
Cow position:
               
chr11:1849246-1849512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 181
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:2351385-2351117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:2422332-2422066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
5, 10
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:4735096-4734828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:6594336-6594598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:6723343-6723608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 6
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:32747473-32747206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 10
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:38573617-38573886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:40138710-40138977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
50, 194
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:49505416-49505150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
75-341
               

               
Cow position:
               
chr11:76206303-76206040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:4474562-4474827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:6344321-6344057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 192
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:10640830-10641091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:26067270-26067531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:26591913-26592182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:33255805-33256072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:35363411-35363145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:37995216-37995479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:38598858-38599126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:54216747-54216481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:58972923-58973190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-342
               

               
Cow position:
               
chr11:67454803-67454536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-343
               

               
Cow position:
               
chr11:3175295-3175029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-347
               

               
Cow position:
               
chr11:69119217-69118943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 195
               

               
Conread position:
               
75-352
               

               
Cow position:
               
chr11:3704230-3703960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
75-357
               

               
Cow position:
               
chr11:3915114-3915399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-357
               

               
Cow position:
               
chr11:32953249-32952966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 172
               

               
Conread position:
               
75-357
               

               
Cow position:
               
chr11:47677095-47676809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-357
               

               
Cow position:
               
chr11:68631778-68632060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
75-357
               

               
Cow position:
               
chr11:74746686-74746404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
5, 15
               

               
Conread position:
               
75-366
               

               
Cow position:
               
chr11:10800802-10800517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
78-314
               

               
Cow position:
               
chr11:29662202-29662437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-324
               

               
Cow position:
               
chr11:15836748-15836502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 117
               

               
Conread position:
               
78-326
               

               
Cow position:
               
chr11:8212687-8212440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-327
               

               
Cow position:
               
chr11:51299691-51299942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-331
               

               
Cow position:
               
chr11:22977954-22978203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
78-341
               

               
Cow position:
               
chr11:21472412-21472677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 192
               

               
Conread position:
               
78-341
               

               
Cow position:
               
chr11:75551172-75551433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 189
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:5481584-5481849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:8564062-8564326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:10851981-10851712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:11991854-11991594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:12316174-12316438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:14259107-14259367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:14361738-14362002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:15500859-15501123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:23884192-23883928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:26121082-26121343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:26551326-26551067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:30448551-30448287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:30701631-30701369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:32076229-32076493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:35737497-35737764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:44153226-44153485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:46780208-46780472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:51208326-51208065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:54178624-54178889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:71333357-71333094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:72314458-72314195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:74563951-74564216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:75195285-75195545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr11:77750113-77749859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-357
               

               
Cow position:
               
chr11:26638696-26638431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-357
               

               
Cow position:
               
chr11:31873481-31873202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
11, 154
               

               
Conread position:
               
78-357
               

               
Cow position:
               
chr11:44511600-44511880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
78-357
               

               
Cow position:
               
chr11:80592203-80591924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
79-297
               

               
Cow position:
               
chr11:38829123-38828905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-298
               

               
Cow position:
               
chr11:32432048-32431829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-306
               

               
Cow position:
               
chr11:16226611-16226390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-327
               

               
Cow position:
               
chr11:30476966-30476720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-327
               

               
Cow position:
               
chr11:75159881-75160118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
79-330
               

               
Cow position:
               
chr11:42836051-42836299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
79-335
               

               
Cow position:
               
chr11:36899375-36899630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-338
               

               
Cow position:
               
chr11:4305374-4305121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 8
               

               
Conread position:
               
79-339
               

               
Cow position:
               
chr11:40132944-40133199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-339
               

               
Cow position:
               
chr11:58123777-58123522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 9
               

               
Conread position:
               
79-339
               

               
Cow position:
               
chr11:73774641-73774379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-341
               

               
Cow position:
               
chr11:5197167-5197425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-341
               

               
Cow position:
               
chr11:28848072-28848327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
79-341
               

               
Cow position:
               
chr11:53925672-53925411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:3998666-3998932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:6325223-6325500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 203
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:21437539-21437278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:36459726-36459465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:38641791-38641528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:38843475-38843212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:42373644-42373386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:43644195-43644452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
149, 21
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:64029348-64029607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:66943055-66943309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr11:81575841-81576102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
79-357
               

               
Cow position:
               
chr11:21856872-21856595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
37, 8
               

               
Conread position:
               
79-359
               

               
Cow position:
               
chr11:71705489-71705770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 155
               

               
Conread position:
               
79-366
               

               
Cow position:
               
chr11:43967308-43967586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
250, 10
               

               
Conread position:
               
80-264
               

               
Cow position:
               
chr11:79728762-79728948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
80-275
               

               
Cow position:
               
chr11:37347386-37347191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
80-276
               

               
Cow position:
               
chr11:55333818-55333622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 7
               

               
Conread position:
               
80-289
               

               
Cow position:
               
chr11:85723609-85723403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
80-296
               

               
Cow position:
               
chr11:65857766-65857552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
80-306
               

               
Cow position:
               
chr11:78381147-78381359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
80-314
               

               
Cow position:
               
chr11:30120759-30120986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
160, 7
               

               
Conread position:
               
80-321
               

               
Cow position:
               
chr11:46747957-46748194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
94, 7
               

               
Conread position:
               
80-336
               

               
Cow position:
               
chr11:38236150-38235892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
94, 7
               

               
Conread position:
               
80-342
               

               
Cow position:
               
chr11:30172282-30172014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
93, 231
               

               
Conread position:
               
80-342
               

               
Cow position:
               
chr11:70483952-70484214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
80-342
               

               
Cow position:
               
chr11:75480121-75480386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
80-342
               

               
Cow position:
               
chr11:77238025-77237770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
80-342
               

               
Cow position:
               
chr11:81066678-81066933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr11:42016726-42016998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
81-265
               

               
Cow position:
               
chr11:30475909-30475724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 8
               

               
Conread position:
               
81-277
               

               
Cow position:
               
chr11:20761752-20761559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
81-278
               

               
Cow position:
               
chr11:24601879-24601679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
81-300
               

               
Cow position:
               
chr11:1071187-1071403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
186, 6
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr11:4316938-4317201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 189
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr11:22341894-22342156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 188
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr11:29004338-29004087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr11:35580163-35579903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 6
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr11:35919869-35920125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
81-352
               

               
Cow position:
               
chr11:952181-951914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 190
               

               
Conread position:
               
81-357
               

               
Cow position:
               
chr11:63389622-63389899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 189
               

               
Conread position:
               
84-264
               

               
Cow position:
               
chr11:53142307-53142487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
5, 110
               

               
Conread position:
               
84-280
               

               
Cow position:
               
chr11:35283028-35282835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
84-352
               

               
Cow position:
               
chr11:8232664-8232921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
84-362
               

               
Cow position:
               
chr11:48901174-48901441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
85-254
               

               
Cow position:
               
chr11:47545034-47544863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
85-261
               

               
Cow position:
               
chr11:50951454-50951279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
88, 5
               

               
Conread position:
               
85-267
               

               
Cow position:
               
chr11:11232551-11232732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
85-269
               

               
Cow position:
               
chr11:34829878-34830058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
117, 49
               

               
Conread position:
               
85-291
               

               
Cow position:
               
chr11:1485451-1485661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 187
               

               
Conread position:
               
85-321
               

               
Cow position:
               
chr11:70382788-70383025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
85-327
               

               
Cow position:
               
chr11:35276204-35275959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
85-331
               

               
Cow position:
               
chr11:53452447-53452681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr11:955269-955021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
85-336
               

               
Cow position:
               
chr11:7333821-7334068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
180, 12
               

               
Conread position:
               
85-339
               

               
Cow position:
               
chr11:48272101-48271847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 179
               

               
Conread position:
               
85-340
               

               
Cow position:
               
chr11:80923420-80923685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 193
               

               
Conread position:
               
85-341
               

               
Cow position:
               
chr11:29615203-29614945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 185
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr11:3393306-3393561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr11:18388958-18389212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
5, 63
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr11:25807851-25808107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
30, 184
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr11:36309507-36309761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
39, 88
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr11:44234256-44234006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr11:44642383-44642632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 88
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr11:53778519-53778265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr11:59872835-59872575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
5, 66
               

               
Conread position:
               
85-357
               

               
Cow position:
               
chr11:3680994-3681261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
85-357
               

               
Cow position:
               
chr11:15694916-15695183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
85-357
               

               
Cow position:
               
chr11:77745352-77745629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 57
               

               
Conread position:
               
85-359
               

               
Cow position:
               
chr11:65409251-65409529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
8, 263
               

               
Conread position:
               
85-397
               

               
Cow position:
               
chr11:49074389-49074689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
86-234
               

               
Cow position:
               
chr11:26277189-26277335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
86-265
               

               
Cow position:
               
chr11:2281387-2281562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
86-269
               

               
Cow position:
               
chr11:15632655-15632835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 148
               

               
Conread position:
               
86-352
               

               
Cow position:
               
chr11:15285709-15285979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 186
               

               
Conread position:
               
87-223
               

               
Cow position:
               
chr11:65762699-65762830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
87-233
               

               
Cow position:
               
chr11:47899180-47899033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
87-237
               

               
Cow position:
               
chr11:62808748-62808896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
87-242
               

               
Cow position:
               
chr11:3726189-3726033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 87
               

               
Conread position:
               
87-242
               

               
Cow position:
               
chr11:35153924-35154080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
87-242
               

               
Cow position:
               
chr11:63520673-63520520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
87-243
               

               
Cow position:
               
chr11:48544337-48544190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr11:45872416-45872576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
87-248
               

               
Cow position:
               
chr11:36647264-36647102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
87-249
               

               
Cow position:
               
chr11:63516727-63516563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
87-250
               

               
Cow position:
               
chr11:81162534-81162691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
87-252
               

               
Cow position:
               
chr11:30764386-30764217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
87-254
               

               
Cow position:
               
chr11:27746825-27746653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
87-254
               

               
Cow position:
               
chr11:34121101-34120929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
87-255
               

               
Cow position:
               
chr11:15608390-15608558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 146
               

               
Conread position:
               
87-255
               

               
Cow position:
               
chr11:36799401-36799561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
87-258
               

               
Cow position:
               
chr11:34032301-34032464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
87-258
               

               
Cow position:
               
chr11:63482525-63482694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr11:45898152-45898325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
87-260
               

               
Cow position:
               
chr11:19247295-19247466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
87-263
               

               
Cow position:
               
chr11:48697350-48697174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
87-263
               

               
Cow position:
               
chr11:77207947-77207775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
87-264
               

               
Cow position:
               
chr11:17227745-17227914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
87-264
               

               
Cow position:
               
chr11:18210445-18210623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
87-264
               

               
Cow position:
               
chr11:45631861-45632039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
87-264
               

               
Cow position:
               
chr11:52380973-52381145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
87-264
               

               
Cow position:
               
chr11:71455694-71455513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr11:377743-377926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr11:33341246-33341421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr11:45646694-45646866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr11:60470278-60470455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr11:62155527-62155355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr11:71309625-71309804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr11:81138124-81137946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 63
               

               
Conread position:
               
87-266
               

               
Cow position:
               
chr11:4674546-4674727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
87-270
               

               
Cow position:
               
chr11:83043463-83043640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
87-272
               

               
Cow position:
               
chr11:73354153-73354337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
87-273
               

               
Cow position:
               
chr11:67931590-67931777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
87-274
               

               
Cow position:
               
chr11:6233979-6234162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
87-274
               

               
Cow position:
               
chr11:11125563-11125377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
154, 85
               

               
Conread position:
               
87-274
               

               
Cow position:
               
chr11:63518912-63518730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
87-274
               

               
Cow position:
               
chr11:81300709-81300896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
87-275
               

               
Cow position:
               
chr11:12950048-12950227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
87-276
               

               
Cow position:
               
chr11:1362575-1362767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
87-276
               

               
Cow position:
               
chr11:21844232-21844418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
85, 140
               

               
Conread position:
               
87-276
               

               
Cow position:
               
chr11:50778274-50778082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
87-277
               

               
Cow position:
               
chr11:2788283-2788093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
38, 89
               

               
Conread position:
               
87-277
               

               
Cow position:
               
chr11:18484265-18484446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
87-277
               

               
Cow position:
               
chr11:25165343-25165159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
87-277
               

               
Cow position:
               
chr11:49934836-49935030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
87-277
               

               
Cow position:
               
chr11:57111406-57111594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
87-277
               

               
Cow position:
               
chr11:70459468-70459288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
87-277
               

               
Cow position:
               
chr11:74316613-74316420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
85, 65
               

               
Conread position:
               
87-277
               

               
Cow position:
               
chr11:83066395-83066209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 65
               

               
Conread position:
               
87-278
               

               
Cow position:
               
chr11:7247979-7248164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
87-282
               

               
Cow position:
               
chr11:38194055-38193859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 194
               

               
Conread position:
               
87-283
               

               
Cow position:
               
chr11:13191126-13190927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 148
               

               
Conread position:
               
87-283
               

               
Cow position:
               
chr11:62965651-62965845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
87-286
               

               
Cow position:
               
chr11:7315224-7315422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
87-291
               

               
Cow position:
               
chr11:18698776-18698572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
87-296
               

               
Cow position:
               
chr11:53719844-53719640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
87-298
               

               
Cow position:
               
chr11:71868703-71868911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
87-299
               

               
Cow position:
               
chr11:23232615-23232821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
87-299
               

               
Cow position:
               
chr11:36182587-36182380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
87-302
               

               
Cow position:
               
chr11:8988328-8988539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
87-308
               

               
Cow position:
               
chr11:36986868-36986645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
5, 184
               

               
Conread position:
               
87-308
               

               
Cow position:
               
chr11:60302058-60302275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr11:51144616-51144394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr11:68909949-68910176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
87-315
               

               
Cow position:
               
chr11:51044030-51044258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 184
               

               
Conread position:
               
87-315
               

               
Cow position:
               
chr11:70609686-70609466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
87-316
               

               
Cow position:
               
chr11:30934325-30934094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
87-316
               

               
Cow position:
               
chr11:32609903-32609669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
85, 189
               

               
Conread position:
               
87-316
               

               
Cow position:
               
chr11:51756219-51755990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 87
               

               
Conread position:
               
87-316
               

               
Cow position:
               
chr11:80761478-80761702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 104
               

               
Conread position:
               
87-317
               

               
Cow position:
               
chr11:62150985-62151210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
214, 18
               

               
Conread position:
               
87-318
               

               
Cow position:
               
chr11:43914114-43913895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
87-321
               

               
Cow position:
               
chr11:13499917-13499684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 89
               

               
Conread position:
               
87-322
               

               
Cow position:
               
chr11:86926026-86926253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr11:56518408-56518643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 182
               

               
Conread position:
               
87-327
               

               
Cow position:
               
chr11:59155978-59156211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
180, 77
               

               
Conread position:
               
87-327
               

               
Cow position:
               
chr11:63065560-63065322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 182
               

               
Conread position:
               
87-329
               

               
Cow position:
               
chr11:63847749-63847513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
87-331
               

               
Cow position:
               
chr11:65970360-65970114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 183
               

               
Conread position:
               
87-332
               

               
Cow position:
               
chr11:33293884-33294133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
33, 185
               

               
Conread position:
               
87-333
               

               
Cow position:
               
chr11:4436227-4435978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 61
               

               
Conread position:
               
87-333
               

               
Cow position:
               
chr11:62490333-62490092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 26
               

               
Conread position:
               
87-335
               

               
Cow position:
               
chr11:58600765-58600519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 141
               

               
Conread position:
               
87-338
               

               
Cow position:
               
chr11:66896896-66897147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
87-339
               

               
Cow position:
               
chr11:47165239-47165482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
86, 46
               

               
Conread position:
               
87-340
               

               
Cow position:
               
chr11:59702387-59702135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:7924681-7924935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 164
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:17889822-17890072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:21819545-21819802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
157, 77
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:37563364-37563111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:44575835-44576089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:46746528-46746282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
184, 18
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:47586447-47586697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:50197535-50197795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 187
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:52297320-52297570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 181
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:58137566-58137310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 183
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:81614736-81614979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr11:83196399-83196151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
72, 84
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:2309772-2309521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
193, 35
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:3833452-3833699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
64, 42
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:4052323-4052580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:4207213-4206947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
95, 81
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:4412114-4412371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
85, 180
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:5031873-5032128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
38, 160
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:6154313-6154063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:8495943-8495686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 155
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:8525210-8525454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 143
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:10076668-10076423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:10213663-10213907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:10294492-10294245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
202, 63
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:10992182-10991915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 82
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:16251346-16251605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 65
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:16910462-16910720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
37, 184
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:17860253-17860505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:20602130-20601888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:24967355-24967114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:26483615-26483370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:26535677-26535414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:27939384-27939135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:29947030-29947288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
181, 38
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:30165412-30165149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:30192075-30191812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:30879584-30879326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:31885419-31885161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:35541224-35541479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 181
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:35684594-35684850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 182
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:37118390-37118133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 132
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:38639020-38638774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
86, 53
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:39115394-39115147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:40486036-40486273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:40818737-40818996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:41577113-41577356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:41598824-41599079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 181
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:42359019-42358773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
168, 35
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:43898040-43897784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:44031903-44031648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 182
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:44636857-44637112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 100
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:44819003-44818757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 186
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:45282830-45282585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:49105958-49105702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:54134349-54134596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:55117383-55117122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 188
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:58588248-58587992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 182
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:58990410-58990159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:62376535-62376788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 64
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:63469777-63469534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:64334758-64334506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:64638628-64638874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:65430960-65430724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:65495425-65495679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:67747185-67746926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 185
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:67951061-67951308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:68206938-68207199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
180, 84
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:74929684-74929429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
38, 155
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:77241271-77241010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 48
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:77758855-77759108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
33, 164
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:80788008-80788262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:81174791-81174539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:82232316-82232072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr11:84385735-84385988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 138
               

               
Conread position:
               
87-346
               

               
Cow position:
               
chr11:43430552-43430813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
178, 30
               

               
Conread position:
               
87-346
               

               
Cow position:
               
chr11:76114555-76114297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
124, 85
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr11:13061329-13061579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr11:19788038-19787788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr11:23138158-23138432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr11:27248393-27248132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr11:32750015-32749747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 185
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr11:34113164-34112903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
154, 33
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr11:42793072-42793320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
85, 160
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr11:85189481-85189758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
87-356
               

               
Cow position:
               
chr11:61454626-61454899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 186
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:41083-40816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 9
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:2344174-2343919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:4732243-4731973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:10875927-10875657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
37, 182
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:15504007-15503736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 183
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:21894251-21894515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:22103657-22103397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:25386964-25386705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:25745225-25744957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
31, 83
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:27386441-27386705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:33349795-33350067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 184
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:33414138-33413868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:34412999-34412734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr11:41239370-41239637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 154
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr11:29655720-29655444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr11:40250700-40250970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
12, 83
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr11:48649882-48649586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 202
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr11:49210917-49211204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
87-363
               

               
Cow position:
               
chr11:77705656-77705392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 27
               

               
Conread position:
               
87-364
               

               
Cow position:
               
chr11:73924661-73924934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 15
               

               
Conread position:
               
87-368
               

               
Cow position:
               
chr11:23128642-23128925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
87-393
               

               
Cow position:
               
chr11:1485965-1486269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
87-396
               

               
Cow position:
               
chr11:61427507-61427212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
281, 63
               

               
Conread position:
               
88-228
               

               
Cow position:
               
chr11:27405166-27405307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
88-241
               

               
Cow position:
               
chr11:18706918-18707065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 46
               

               
Conread position:
               
88-243
               

               
Cow position:
               
chr11:16342340-16342495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 35
               

               
Conread position:
               
88-258
               

               
Cow position:
               
chr11:55052786-55052604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
88-260
               

               
Cow position:
               
chr11:24937563-24937392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
88-261
               

               
Cow position:
               
chr11:75748333-75748164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
88-263
               

               
Cow position:
               
chr11:32378087-32377914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
88-265
               

               
Cow position:
               
chr11:12111567-12111743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
88-265
               

               
Cow position:
               
chr11:58102871-58103050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
88-270
               

               
Cow position:
               
chr11:39057534-39057359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
88-276
               

               
Cow position:
               
chr11:3282951-3282773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
88-276
               

               
Cow position:
               
chr11:48474603-48474421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
88-278
               

               
Cow position:
               
chr11:36981467-36981280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 74
               

               
Conread position:
               
88-289
               

               
Cow position:
               
chr11:6620385-6620590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 179
               

               
Conread position:
               
88-298
               

               
Cow position:
               
chr11:35238734-35238521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 183
               

               
Conread position:
               
88-303
               

               
Cow position:
               
chr11:62019693-62019913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 183
               

               
Conread position:
               
88-335
               

               
Cow position:
               
chr11:2092239-2092003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
88-337
               

               
Cow position:
               
chr11:31900946-31900702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
88-341
               

               
Cow position:
               
chr11:41809574-41809827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
88-341
               

               
Cow position:
               
chr11:73512531-73512770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 65
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:259273-259536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
64, 116
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:1625318-1625570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
177, 79
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:8827682-8827430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:17112728-17112978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:34616168-34615917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:35874092-35874324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:37068409-37068655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:40459015-40458770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:42083378-42083132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:55744377-55744122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:62749848-62750101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 153
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr11:67745228-67744977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
88-346
               

               
Cow position:
               
chr11:17321560-17321306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 160
               

               
Conread position:
               
88-357
               

               
Cow position:
               
chr11:16795252-16795513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
88-357
               

               
Cow position:
               
chr11:16901164-16900899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 19
               

               
Conread position:
               
88-357
               

               
Cow position:
               
chr11:37974825-37974560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
88-357
               

               
Cow position:
               
chr11:50236065-50236334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
88-357
               

               
Cow position:
               
chr11:53130711-53130450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
88-361
               

               
Cow position:
               
chr11:11534002-11534267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
88-368
               

               
Cow position:
               
chr11:17968677-17968949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
88-393
               

               
Cow position:
               
chr11:8840838-8841142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
85, 180
               

               
Conread position:
               
88-434
               

               
Cow position:
               
chr11:53313666-53313999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
12, 178
               

               
Conread position:
               
89-274
               

               
Cow position:
               
chr11:40608821-40609004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
89-276
               

               
Cow position:
               
chr11:7590091-7589905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 7
               

               
Conread position:
               
89-342
               

               
Cow position:
               
chr11:3769393-3769638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
89-342
               

               
Cow position:
               
chr11:42232503-42232261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 58
               

               
Conread position:
               
90-277
               

               
Cow position:
               
chr11:10877135-10876951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
90-277
               

               
Cow position:
               
chr11:43646510-43646703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
90-304
               

               
Cow position:
               
chr11:34962959-34962749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
90-342
               

               
Cow position:
               
chr11:11752622-11752866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
90-342
               

               
Cow position:
               
chr11:18509121-18509360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
90-342
               

               
Cow position:
               
chr11:53147640-53147891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
90-357
               

               
Cow position:
               
chr11:55348162-55347900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
83, 8
               

               
Conread position:
               
91-224
               

               
Cow position:
               
chr11:62620279-62620150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
91-260
               

               
Cow position:
               
chr11:7414952-7415116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
91-262
               

               
Cow position:
               
chr11:17192386-17192554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
91-263
               

               
Cow position:
               
chr11:30912094-30912265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
91-276
               

               
Cow position:
               
chr11:10620429-10620611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
91-296
               

               
Cow position:
               
chr11:25319949-25319745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
91-338
               

               
Cow position:
               
chr11:61203066-61202806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
91-338
               

               
Cow position:
               
chr11:64090188-64090433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
91-341
               

               
Cow position:
               
chr11:44044067-44043823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
91-342
               

               
Cow position:
               
chr11:866200-865945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
91-342
               

               
Cow position:
               
chr11:30354967-30354711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
24, 5
               

               
Conread position:
               
91-342
               

               
Cow position:
               
chr11:64932404-64932649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
177, 9
               

               
Conread position:
               
91-342
               

               
Cow position:
               
chr11:79019627-79019885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
82, 6
               

               
Conread position:
               
91-342
               

               
Cow position:
               
chr11:80820103-80820350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 5
               

               
Conread position:
               
91-359
               

               
Cow position:
               
chr11:49679243-49679511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 178
               

               
Conread position:
               
92-277
               

               
Cow position:
               
chr11:48932689-48932869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
92-340
               

               
Cow position:
               
chr11:8339510-8339754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
92-340
               

               
Cow position:
               
chr11:59463740-59463985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
93-286
               

               
Cow position:
               
chr11:12528711-12528891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
93-342
               

               
Cow position:
               
chr11:21886642-21886887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
152, 74
               

               
Conread position:
               
93-357
               

               
Cow position:
               
chr11:9433218-9432955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
94-276
               

               
Cow position:
               
chr11:63920395-63920573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
94-341
               

               
Cow position:
               
chr11:14287632-14287384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
30, 175
               

               
Conread position:
               
94-341
               

               
Cow position:
               
chr11:14297625-14297377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
30, 175
               

               
Conread position:
               
94-342
               

               
Cow position:
               
chr11:5272729-5272977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
94-342
               

               
Cow position:
               
chr11:12353046-12353295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 175
               

               
Conread position:
               
94-342
               

               
Cow position:
               
chr11:14425753-14426002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 175
               

               
Conread position:
               
94-342
               

               
Cow position:
               
chr11:84628053-84628301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 175
               

               
Conread position:
               
95-342
               

               
Cow position:
               
chr11:3303728-3303485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
78, 57
               

               
Conread position:
               
96-322
               

               
Cow position:
               
chr11:76976153-76976380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
28, 173
               

               
Conread position:
               
96-341
               

               
Cow position:
               
chr11:16088892-16088647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 173
               

               
Conread position:
               
96-341
               

               
Cow position:
               
chr11:23866837-23866591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 174
               

               
Conread position:
               
96-341
               

               
Cow position:
               
chr11:42411403-42411157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 173
               

               
Conread position:
               
96-342
               

               
Cow position:
               
chr11:46592213-46591978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
97-263
               

               
Cow position:
               
chr11:8105673-8105509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
97-276
               

               
Cow position:
               
chr11:19508186-19508011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
149, 74
               

               
Conread position:
               
97-276
               

               
Cow position:
               
chr11:67804643-67804465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 131
               

               
Conread position:
               
97-277
               

               
Cow position:
               
chr11:80530259-80530084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
97-297
               

               
Cow position:
               
chr11:41986152-41986350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
97-309
               

               
Cow position:
               
chr11:9837209-9837419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
97-311
               

               
Cow position:
               
chr11:24417887-24417672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-312
               

               
Cow position:
               
chr11:39799784-39799568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-327
               

               
Cow position:
               
chr11:24731825-24731594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-340
               

               
Cow position:
               
chr11:54580714-54580470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:1133440-1133685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:2800416-2800661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:4597411-4597166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:5278651-5278896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:5895059-5895304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:6304213-6304458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:12372932-12372687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:13247224-13247469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:15048301-15048056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:17078809-17078564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:18097674-18097919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:20284774-20285019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:21929278-21929523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:24334606-24334361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:26511790-26512035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:27605404-27605159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:27944457-27944212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:28348765-28349010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:30000505-30000260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:32030986-32030742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 122
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:35206627-35206872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:38021112-38021357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:38818654-38818899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:41040801-41041046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:41161653-41161898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:41260085-41260330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:41262012-41261767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:41269538-41269783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:41421938-41422183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:44356057-44356302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:46142144-46142390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 173
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:47572680-47572925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:47655636-47655391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:47846834-47846589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:52895899-52895654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:56051649-56051404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 172
               
UCSC Genome Browser

               
Conread position:
               
97-341
               

               
Cow position:
               
chr11:57594247-57594492 (view  custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 172
               
UCSC Genome Browser

               
               
               
Conread position:
97-341

               
               
               
Cow position:
chr11:57760695-57760450 (view  custom track)

               
               
               
Alignm length:
248

               
               
               
Alignm identity:
172

               
               
               
Alignm E-value:
2e-31

               
               
               
Alignm gaps (pig, cow):
27, 172
UCSC Genome Browser

               
               
               
Conread position:
97-341

               
               
               
Cow position:
chr11:58883690-58883935 (view  custom track)

               
               
               
Alignm length:
248

               
               
               
Alignm identity:
170

               
               
               
Alignm E-value:
1e-29

               
               
               
Alignm gaps (pig, cow):
27, 172

               
               
               Conread position:97-341
               
               
               Cow position:chr11:60629047-60629291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:97-341
               
               
               Cow position:chr11:66529689-66529934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 172

               
               
               Conread position:97-341
               
               
               Cow position:chr11:74389898-74389653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 172

               
               
               Conread position:97-341
               
               
               Cow position:chr11:82991222-82990976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 200

               
               
               Conread position:97-341
               
               
               Cow position:chr11:84184625-84184380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 172

               
               
               Conread position:97-342
               
               
               Cow position:chr11:31352678-31352922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):19, 144

               
               
               Conread position:97-342
               
               
               Cow position:chr11:50152925-50153168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 144

               
               
               Conread position:97-342
               
               
               Cow position:chr11:68137037-68136791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):27, 172

               
               
               Conread position:97-342
               
               
               Cow position:chr11:84890859-84891095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):71, 144

               
               
               Conread position:97-356
               
               
               Cow position:chr11:71846455-71846713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 171

               
               
               Conread position:98-341
               
               
               Cow position:chr11:1167975-1167731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 172

               
               
               Conread position:98-342
               
               
               Cow position:chr11:8563255-8563501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 172

               
               
               Conread position:98-342
               
               
               Cow position:chr11:14649422-14649649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:98-342
               
               
               Cow position:chr11:28643974-28643737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 61

               
               
               Conread position:98-357
               
               
               Cow position:chr11:13205717-13205969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:100-265
               
               
               Cow position:chr11:51687837-51688001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:100-274
               
               
               Cow position:chr11:18244050-18244225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-314
               
               
               Cow position:chr11:68846474-68846259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:100-335
               
               
               Cow position:chr11:36193192-36192957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-339
               
               
               Cow position:chr11:57573203-57573441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-340
               
               
               Cow position:chr11:10948581-10948822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:100-341
               
               
               Cow position:chr11:3239141-3238899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-341
               
               
               Cow position:chr11:5224997-5224755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-341
               
               
               Cow position:chr11:16547110-16547351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:100-341
               
               
               Cow position:chr11:21371145-21371395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 180

               
               
               Conread position:100-341
               
               
               Cow position:chr11:30837434-30837192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-341
               
               
               Cow position:chr11:36166919-36167159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:100-341
               
               
               Cow position:chr11:37472585-37472343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-341
               
               
               Cow position:chr11:44514522-44514764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-341
               
               
               Cow position:chr11:56022200-56021959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:100-341
               
               
               Cow position:chr11:57624185-57624427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-341
               
               
               Cow position:chr11:58381384-58381143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:100-341
               
               
               Cow position:chr11:60945882-60945640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-341
               
               
               Cow position:chr11:61876657-61876416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:100-341
               
               
               Cow position:chr11:64382489-64382247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-341
               
               
               Cow position:chr11:84967948-84967707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-342
               
               
               Cow position:chr11:986821-986595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:100-342
               
               
               Cow position:chr11:9731024-9731267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-342
               
               
               Cow position:chr11:17103869-17104108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:100-342
               
               
               Cow position:chr11:18526000-18526244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):21, 168

               
               
               Conread position:100-342
               
               
               Cow position:chr11:19216055-19216294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 157

               
               
               Conread position:100-342
               
               
               Cow position:chr11:20730387-20730629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):24, 161

               
               
               Conread position:100-342
               
               
               Cow position:chr11:26433388-26433143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 172

               
               
               Conread position:100-342
               
               
               Cow position:chr11:28225939-28226180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:100-342
               
               
               Cow position:chr11:31437106-31437350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 170

               
               
               Conread position:100-342
               
               
               Cow position:chr11:36203125-36202882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 93

               
               
               Conread position:100-342
               
               
               Cow position:chr11:38810459-38810688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 158

               
               
               Conread position:100-342
               
               
               Cow position:chr11:40601315-40601558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-342
               
               
               Cow position:chr11:40636657-40636415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:100-342
               
               
               Cow position:chr11:43593880-43593641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:100-342
               
               
               Cow position:chr11:52475296-52475539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 168

               
               
               Conread position:100-342
               
               
               Cow position:chr11:52847316-52847073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-342
               
               
               Cow position:chr11:63260370-63260614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 170

               
               
               Conread position:100-342
               
               
               Cow position:chr11:66663583-66663822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 162

               
               
               Conread position:100-342
               
               
               Cow position:chr11:70529797-70530039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:100-342
               
               
               Cow position:chr11:73138412-73138169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-342
               
               
               Cow position:chr11:87147376-87147619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-357
               
               
               Cow position:chr11:15496228-15495971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 169

               
               
               Conread position:100-357
               
               
               Cow position:chr11:18765770-18766026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 168

               
               
               Conread position:100-357
               
               
               Cow position:chr11:21621273-21621014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 173

               
               
               Conread position:100-357
               
               
               Cow position:chr11:25742991-25742734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-357
               
               
               Cow position:chr11:32974391-32974134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 146

               
               
               Conread position:100-357
               
               
               Cow position:chr11:33192424-33192681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:100-357
               
               
               Cow position:chr11:35141495-35141752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-357
               
               
               Cow position:chr11:39032977-39032720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-357
               
               
               Cow position:chr11:45677993-45677743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:100-357
               
               
               Cow position:chr11:63149534-63149791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-357
               
               
               Cow position:chr11:66389174-66389431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 169

               
               
               Conread position:100-361
               
               
               Cow position:chr11:15989137-15988875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:100-386
               
               
               Cow position:chr11:10095235-10094946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:100-426
               
               
               Cow position:chr11:48428971-48428648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):164, 53

               
               
               Conread position:101-276
               
               
               Cow position:chr11:9221837-9222013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:101-276
               
               
               Cow position:chr11:9234517-9234341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:101-285
               
               
               Cow position:chr11:6835421-6835233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 171

               
               
               Conread position:101-286
               
               
               Cow position:chr11:3720144-3719956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:101-298
               
               
               Cow position:chr11:18588688-18588887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:101-307
               
               
               Cow position:chr11:32595359-32595150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:101-310
               
               
               Cow position:chr11:287444-287653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:101-341
               
               
               Cow position:chr11:9235324-9235567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):23, 170

               
               
               Conread position:101-341
               
               
               Cow position:chr11:29916422-29916197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:101-341
               
               
               Cow position:chr11:64044128-64043899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:101-342
               
               
               Cow position:chr11:34277642-34277400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 168

               
               
               Conread position:101-342
               
               
               Cow position:chr11:34278922-34278680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 168

               
               
               Conread position:101-342
               
               
               Cow position:chr11:40467231-40467475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:101-342
               
               
               Cow position:chr11:84774997-84774766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:101-346
               
               
               Cow position:chr11:83357283-83357040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:101-352
               
               
               Cow position:chr11:31833422-31833673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 168

               
               
               Conread position:101-354
               
               
               Cow position:chr11:73478506-73478261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:101-357
               
               
               Cow position:chr11:25336967-25336706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:101-357
               
               
               Cow position:chr11:54856522-54856269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:101-361
               
               
               Cow position:chr11:43524510-43524253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:102-341
               
               
               Cow position:chr11:24146008-24145768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 167

               
               
               Conread position:102-341
               
               
               Cow position:chr11:28106105-28106344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:102-341
               
               
               Cow position:chr11:32763582-32763344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 31

               
               
               Conread position:102-341
               
               
               Cow position:chr11:52180153-52179914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:102-341
               
               
               Cow position:chr11:61059722-61059961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:102-341
               
               
               Cow position:chr11:72016064-72016303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 167

               
               
               Conread position:102-341
               
               
               Cow position:chr11:72050830-72050590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 167

               
               
               Conread position:102-342
               
               
               Cow position:chr11:8428387-8428132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:102-342
               
               
               Cow position:chr11:36198912-36198671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 167

               
               
               Conread position:102-342
               
               
               Cow position:chr11:60998700-60998942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 168

               
               
               Conread position:102-357
               
               
               Cow position:chr11:62821444-62821699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 167

               
               
               Conread position:102-357
               
               
               Cow position:chr11:68750760-68751013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 167

               
               
               Conread position:102-393
               
               
               Cow position:chr11:68131224-68130936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:103-265
               
               
               Cow position:chr11:75355495-75355334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:103-312
               
               
               Cow position:chr11:41233953-41234162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-341
               
               
               Cow position:chr11:5425448-5425210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-341
               
               
               Cow position:chr11:15559873-15560111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-341
               
               
               Cow position:chr11:27497357-27497119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-341
               
               
               Cow position:chr11:28620457-28620219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-341
               
               
               Cow position:chr11:33146609-33146847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-341
               
               
               Cow position:chr11:39078223-39078461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-341
               
               
               Cow position:chr11:43536653-43536891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-341
               
               
               Cow position:chr11:57254161-57253923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-352
               
               
               Cow position:chr11:41163793-41164041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:103-352
               
               
               Cow position:chr11:64082409-64082161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:104-265
               
               
               Cow position:chr11:17036665-17036827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:104-265
               
               
               Cow position:chr11:75510347-75510508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:104-317
               
               
               Cow position:chr11:51177390-51177176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 150

               
               
               Conread position:104-327
               
               
               Cow position:chr11:46451497-46451282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:104-336
               
               
               Cow position:chr11:58614545-58614308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 135

               
               
               Conread position:104-338
               
               
               Cow position:chr11:31236773-31236543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:104-341
               
               
               Cow position:chr11:8019860-8019640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:104-342
               
               
               Cow position:chr11:33001886-33001651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:104-342
               
               
               Cow position:chr11:61846117-61846357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 166

               
               
               Conread position:104-342
               
               
               Cow position:chr11:77750888-77751117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:104-357
               
               
               Cow position:chr11:61137323-61137563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):194, 60

               
               
               Conread position:104-357
               
               
               Cow position:chr11:66733721-66733470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:105-258
               
               
               Cow position:chr11:64405451-64405600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:105-276
               
               
               Cow position:chr11:70163790-70163612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:105-277
               
               
               Cow position:chr11:6091776-6091935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:105-277
               
               
               Cow position:chr11:41272024-41271850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:105-318
               
               
               Cow position:chr11:3780536-3780752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):15, 164

               
               
               Conread position:105-339
               
               
               Cow position:chr11:41812025-41812260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:105-342
               
               
               Cow position:chr11:17831334-17831584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 203

               
               
               Conread position:105-342
               
               
               Cow position:chr11:35881793-35881555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):156, 63

               
               
               Conread position:105-342
               
               
               Cow position:chr11:47125444-47125220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:105-342
               
               
               Cow position:chr11:64048204-64047969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:105-343
               
               
               Cow position:chr11:29014280-29014034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 123

               
               
               Conread position:106-248
               
               
               Cow position:chr11:56728834-56728688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:106-357
               
               
               Cow position:chr11:62979361-62979112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:106-361
               
               
               Cow position:chr11:48672587-48672339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:107-266
               
               
               Cow position:chr11:57498928-57499090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:107-339
               
               
               Cow position:chr11:15279002-15279217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:108-335
               
               
               Cow position:chr11:18066964-18067185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:108-340
               
               
               Cow position:chr11:60515095-60515315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:108-342
               
               
               Cow position:chr11:44036598-44036364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 160

               
               
               Conread position:109-264
               
               
               Cow position:chr11:62739098-62738941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:109-339
               
               
               Cow position:chr11:49550199-49550422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 110

               
               
               Conread position:109-341
               
               
               Cow position:chr11:19238278-19238507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 63

               
               
               Conread position:109-342
               
               
               Cow position:chr11:23251722-23251955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:109-342
               
               
               Cow position:chr11:76768245-76768014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:109-347
               
               
               Cow position:chr11:30961991-30961758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):160, 59

               
               
               Conread position:109-363
               
               
               Cow position:chr11:32194282-32194534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:110-311
               
               
               Cow position:chr11:46001806-46002002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 49

               
               
               Conread position:110-320
               
               
               Cow position:chr11:30466739-30466951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):63, 131

               
               
               Conread position:110-341
               
               
               Cow position:chr11:81551305-81551534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 56

               
               
               Conread position:110-342
               
               
               Cow position:chr11:34467475-34467258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):136, 53

               
               
               Conread position:111-252
               
               
               Cow position:chr11:31227866-31227732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:111-277
               
               
               Cow position:chr11:65988105-65987944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:111-339
               
               
               Cow position:chr11:78480677-78480450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):61, 160

               
               
               Conread position:112-342
               
               
               Cow position:chr11:49873303-49873074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:113-342
               
               
               Cow position:chr11:46473808-46474043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:115-342
               
               
               Cow position:chr11:3266255-3266019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 57

               
               
               Conread position:115-357
               
               
               Cow position:chr11:25791819-25792058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):58, 35

               
               
               Conread position:115-357
               
               
               Cow position:chr11:39152551-39152322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:117-342
               
               
               Cow position:chr11:29802692-29802905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:119-349
               
               
               Cow position:chr11:70838434-70838657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:119-387
               
               
               Cow position:chr11:18141110-18140846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 119

               
               
               Conread position:121-270
               
               
               Cow position:chr11:57481001-57481145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:121-297
               
               
               Cow position:chr11:70273167-70272997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:121-341
               
               
               Cow position:chr11:30708365-30708142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 31

               
               
               Conread position:121-342
               
               
               Cow position:chr11:68570807-68571023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:122-263
               
               
               Cow position:chr11:41315450-41315587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:122-265
               
               
               Cow position:chr11:36125544-36125399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:122-270
               
               
               Cow position:chr11:80520837-80520688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:122-279
               
               
               Cow position:chr11:23418896-23418739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 72

               
               
               Conread position:122-289
               
               
               Cow position:chr11:50112056-50111893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):51, 30

               
               
               Conread position:122-301
               
               
               Cow position:chr11:80809778-80809957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 143

               
               
               Conread position:122-325
               
               
               Cow position:chr11:32218129-32218331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 148

               
               
               Conread position:122-334
               
               
               Cow position:chr11:46398990-46398779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:122-339
               
               
               Cow position:chr11:35506739-35506527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:122-339
               
               
               Cow position:chr11:70745669-70745884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 119

               
               
               Conread position:122-341
               
               
               Cow position:chr11:10872383-10872163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 147

               
               
               Conread position:122-342
               
               
               Cow position:chr11:2910956-2911172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:122-342
               
               
               Cow position:chr11:18086474-18086689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:122-342
               
               
               Cow position:chr11:39034315-39034110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:122-342
               
               
               Cow position:chr11:40144935-40145156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:122-342
               
               
               Cow position:chr11:76606549-76606338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:122-357
               
               
               Cow position:chr11:32067173-32067396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:122-357
               
               
               Cow position:chr11:39645150-39644915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:122-361
               
               
               Cow position:chr11:15641366-15641130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:122-362
               
               
               Cow position:chr11:26585845-26585608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:122-362
               
               
               Cow position:chr11:29608302-29608535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:122-363
               
               
               Cow position:chr11:697301-697541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):124, 49

               
               
               Conread position:122-380
               
               
               Cow position:chr11:81337104-81337354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):51, 146

               
               
               Conread position:122-396
               
               
               Cow position:chr11:13942678-13942408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:123-277
               
               
               Cow position:chr11:63166295-63166446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:123-279
               
               
               Cow position:chr11:6580681-6580525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 142

               
               
               Conread position:123-289
               
               
               Cow position:chr11:19487613-19487774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:123-342
               
               
               Cow position:chr11:6156682-6156898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:123-342
               
               
               Cow position:chr11:9389147-9388932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):50, 64

               
               
               Conread position:123-342
               
               
               Cow position:chr11:15467334-15467116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:123-342
               
               
               Cow position:chr11:21631979-21631756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:123-342
               
               
               Cow position:chr11:31138532-31138748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:123-342
               
               
               Cow position:chr11:33012759-33012539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 146

               
               
               Conread position:123-342
               
               
               Cow position:chr11:33600820-33601039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 145

               
               
               Conread position:123-342
               
               
               Cow position:chr11:43509516-43509735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 145

               
               
               Conread position:123-342
               
               
               Cow position:chr11:46329365-46329149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:123-342
               
               
               Cow position:chr11:53428015-53428233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:123-346
               
               
               Cow position:chr11:23495733-23495514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:123-357
               
               
               Cow position:chr11:37292724-37292491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 145

               
               
               Conread position:123-357
               
               
               Cow position:chr11:45277289-45277520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):50, 118

               
               
               Conread position:123-385
               
               
               Cow position:chr11:41166874-41167138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 148

               
               
               Conread position:123-385
               
               
               Cow position:chr11:44579423-44579678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:124-304
               
               
               Cow position:chr11:42003091-42003266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):143, 114

               
               
               Conread position:124-342
               
               
               Cow position:chr11:18371581-18371781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:124-342
               
               
               Cow position:chr11:42291969-42292186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:124-342
               
               
               Cow position:chr11:56751521-56751726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 76

               
               
               Conread position:124-357
               
               
               Cow position:chr11:55115787-55116012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 133

               
               
               Conread position:125-342
               
               
               Cow position:chr11:18913128-18912912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 116

               
               
               Conread position:126-361
               
               
               Cow position:chr11:13894245-13894468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:127-276
               
               
               Cow position:chr11:30110828-30110686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:127-277
               
               
               Cow position:chr11:51020183-51020032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:127-338
               
               
               Cow position:chr11:81279360-81279149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:127-339
               
               
               Cow position:chr11:60778395-60778183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 142

               
               
               Conread position:127-340
               
               
               Cow position:chr11:12177394-12177607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-340
               
               
               Cow position:chr11:48885513-48885300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:2294477-2294266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:127-341
               
               
               Cow position:chr11:2535502-2535288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:2773149-2772935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:3721891-3721679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:127-341
               
               
               Cow position:chr11:9908627-9908841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:10810208-10810422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:11230741-11230955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:11876745-11876531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:13015014-13015228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:17549971-17549757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:18586883-18587097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:19996833-19997047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:127-341
               
               
               Cow position:chr11:22617133-22617347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:23979703-23979489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:24137011-24136797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:26254602-26254385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 144

               
               
               Conread position:127-341
               
               
               Cow position:chr11:30088689-30088475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:32395407-32395621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:32455858-32455649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:127-341
               
               
               Cow position:chr11:39654339-39654553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:40404315-40404529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:48109722-48109509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:127-341
               
               
               Cow position:chr11:54303371-54303157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:54304737-54304523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:56623235-56623021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:56827414-56827200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:57269545-57269332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 121

               
               
               Conread position:127-341
               
               
               Cow position:chr11:58947330-58947544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:61891811-61891597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:63859832-63860046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:69006643-69006429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:73797894-73798106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:127-341
               
               
               Cow position:chr11:75222756-75222542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:75284858-75285072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:77011266-77011480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-341
               
               
               Cow position:chr11:81360250-81360036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-342
               
               
               Cow position:chr11:1267692-1267907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-342
               
               
               Cow position:chr11:3496718-3496503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-342
               
               
               Cow position:chr11:5229217-5229432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-342
               
               
               Cow position:chr11:5328658-5328442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:127-342
               
               
               Cow position:chr11:7120161-7120376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:127-342
               
               
               Cow position:chr11:27681361-27681149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 114

               
               
               Conread position:127-342
               
               
               Cow position:chr11:28127026-28126816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 122

               
               
               Conread position:127-342
               
               
               Cow position:chr11:31866468-31866248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:127-342
               
               
               Cow position:chr11:41315109-41314894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-342
               
               
               Cow position:chr11:43375495-43375708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:127-342
               
               
               Cow position:chr11:69443289-69443504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:127-342
               
               
               Cow position:chr11:75401719-75401934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:127-352
               
               
               Cow position:chr11:77179232-77179456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-356
               
               
               Cow position:chr11:24045141-24045369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:127-357
               
               
               Cow position:chr11:18537387-18537616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:127-358
               
               
               Cow position:chr11:7555755-7555525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:127-361
               
               
               Cow position:chr11:27724095-27724328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:127-363
               
               
               Cow position:chr11:62008988-62009224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:127-370
               
               
               Cow position:chr11:18891143-18890890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:127-388
               
               
               Cow position:chr11:85678445-85678186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):153, 16

               
               
               Conread position:129-341
               
               
               Cow position:chr11:23774065-23773853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):45, 139

               
               
               Conread position:132-342
               
               
               Cow position:chr11:6645078-6644869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:133-342
               
               
               Cow position:chr11:48703360-48703158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:134-260
               
               
               Cow position:chr11:83925096-83924970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:134-313
               
               
               Cow position:chr11:7683682-7683509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:134-315
               
               
               Cow position:chr11:9552858-9552677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 134

               
               
               Conread position:134-326
               
               
               Cow position:chr11:40281609-40281801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 135

               
               
               Conread position:134-339
               
               
               Cow position:chr11:2821384-2821186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:134-341
               
               
               Cow position:chr11:6633240-6633038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:134-342
               
               
               Cow position:chr11:25760549-25760342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:134-342
               
               
               Cow position:chr11:27923642-27923434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:134-342
               
               
               Cow position:chr11:27925683-27925475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:134-342
               
               
               Cow position:chr11:47566096-47566305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:134-342
               
               
               Cow position:chr11:53860142-53859934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:134-352
               
               
               Cow position:chr11:39994273-39994483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:134-352
               
               
               Cow position:chr11:69075160-69074951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:135-272
               
               
               Cow position:chr11:67345198-67345332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:135-274
               
               
               Cow position:chr11:72921793-72921925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:135-278
               
               
               Cow position:chr11:49057031-49056888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 133

               
               
               Conread position:135-342
               
               
               Cow position:chr11:28843311-28843107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 118

               
               
               Conread position:135-361
               
               
               Cow position:chr11:46247303-46247075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:136-342
               
               
               Cow position:chr11:7460724-7460931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 134

               
               
               Conread position:136-342
               
               
               Cow position:chr11:37278345-37278550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):37, 112

               
               
               Conread position:137-341
               
               
               Cow position:chr11:18397929-18398133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 131

               
               
               Conread position:137-341
               
               
               Cow position:chr11:26337091-26337295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:137-342
               
               
               Cow position:chr11:18612534-18612736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:138-338
               
               
               Cow position:chr11:54334184-54333985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:139-342
               
               
               Cow position:chr11:49522788-49522591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:140-285
               
               
               Cow position:chr11:37547063-37547207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 128

               
               
               Conread position:140-327
               
               
               Cow position:chr11:75286559-75286744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:140-341
               
               
               Cow position:chr11:10044044-10043843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:140-342
               
               
               Cow position:chr11:48659539-48659342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:141-322
               
               
               Cow position:chr11:439809-439990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 124

               
               
               Conread position:142-342
               
               
               Cow position:chr11:3797254-3797058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:142-342
               
               
               Cow position:chr11:56464161-56463961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:146-341
               
               
               Cow position:chr11:35058944-35059139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:146-341
               
               
               Cow position:chr11:61396827-61397022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:146-341
               
               
               Cow position:chr11:83001818-83001627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:146-342
               
               
               Cow position:chr11:71391765-71391952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:147-327
               
               
               Cow position:chr11:27907392-27907219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:147-341
               
               
               Cow position:chr11:7152786-7152595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):139, 24

               
               
               Conread position:147-341
               
               
               Cow position:chr11:23425003-23425197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:147-341
               
               
               Cow position:chr11:44893088-44893283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 122

               
               
               Conread position:147-341
               
               
               Cow position:chr11:65671135-65670941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:147-342
               
               
               Cow position:chr11:5418422-5418612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:147-342
               
               
               Cow position:chr11:67345799-67345996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):26, 123

               
               
               Conread position:147-343
               
               
               Cow position:chr11:32198783-32198589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:147-345
               
               
               Cow position:chr11:59959135-59959330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:147-352
               
               
               Cow position:chr11:393892-393691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):197, 21

               
               
               Conread position:148-342
               
               
               Cow position:chr11:36475141-36474950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:149-333
               
               
               Cow position:chr11:26327641-26327823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:149-357
               
               
               Cow position:chr11:31837317-31837118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:150-317
               
               
               Cow position:chr11:40792857-40793027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:151-342
               
               
               Cow position:chr11:68327211-68327404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 122

               
               
               Conread position:152-335
               
               
               Cow position:chr11:49011531-49011714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 116

               
               
               Conread position:152-341
               
               
               Cow position:chr11:70329712-70329523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 116

               
               
               Conread position:152-342
               
               
               Cow position:chr11:52127216-52127406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:153-341
               
               
               Cow position:chr11:22842900-22843088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:153-363
               
               
               Cow position:chr11:33686712-33686917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:153-404
               
               
               Cow position:chr11:5933029-5933276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:154-360
               
               
               Cow position:chr11:62710034-62710240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 190

               
               
               Conread position:157-342
               
               
               Cow position:chr11:4323200-4323015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 111

               
               
               Conread position:158-341
               
               
               Cow position:chr11:12762417-12762597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:161-334
               
               
               Cow position:chr11:67847860-67848032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:161-342
               
               
               Cow position:chr11:11996062-11996235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:161-342
               
               
               Cow position:chr11:48693220-48693041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:165-341
               
               
               Cow position:chr11:14491584-14491760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:172-324
               
               
               Cow position:chr11:39499194-39499043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:172-341
               
               
               Cow position:chr11:1380510-1380344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:172-357
               
               
               Cow position:chr11:40402015-40402198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:173-325
               
               
               Cow position:chr11:12555851-12555698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:173-341
               
               
               Cow position:chr11:11315063-11315230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):113, 94

               
               
               Conread position:173-341
               
               
               Cow position:chr11:11489473-11489640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):113, 94

               
               
               Conread position:173-342
               
               
               Cow position:chr11:37991911-37992074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:173-346
               
               
               Cow position:chr11:33526892-33526712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 55

               
               
               Conread position:174-341
               
               
               Cow position:chr11:34637740-34637906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 93

               
               
               Conread position:174-342
               
               
               Cow position:chr11:35981608-35981773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:175-340
               
               
               Cow position:chr11:47662539-47662382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:175-342
               
               
               Cow position:chr11:71168763-71168926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:176-342
               
               
               Cow position:chr11:19890695-19890533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):91, 61

               
               
               Conread position:178-342
               
               
               Cow position:chr11:7873973-7873810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:179-342
               
               
               Cow position:chr11:40771886-40772048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:182-342
               
               
               Cow position:chr11:15373445-15373286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:185-341
               
               
               Cow position:chr11:59604059-59603904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):103, 82

               
               
               Conread position:185-342
               
               
               Cow position:chr11:78819917-78819756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 87

               
               
               Conread position:192-342
               
               
               Cow position:chr11:80556056-80555910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:195-325
               
               
               Cow position:chr11:81914102-81913973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:195-338
               
               
               Cow position:chr11:70601307-70601448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:195-342
               
               
               Cow position:chr11:51029147-51029000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:195-361
               
               
               Cow position:chr11:19592339-19592499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:196-342
               
               
               Cow position:chr11:66231138-66230993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:198-341
               
               
               Cow position:chr11:5527065-5527209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:200-343
               
               
               Cow position:chr11:27817480-27817621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:215-357
               
               
               Cow position:chr11:17508941-17508801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:220-342
               
               
               Cow position:chr11:9653780-9653900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:225-342
               
               
               Cow position:chr11:4390881-4390995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:229-342
               
               
               Cow position:chr11:16342637-16342750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:236-341
               
               
               Cow position:chr11:54307669-54307773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:236-341
               
               
               Cow position:chr11:61431034-61431138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:236-341
               
               
               Cow position:chr11:69588382-69588278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:236-366
               
               
               Cow position:chr11:37419317-37419445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 31
Show alignments to all cow chromosomes.