Cow genome map
| Conread name: | Ss1.1-unkn-F_1_A02.5 |
| Conread position: | 462-602 |
| Cow position: | chr19:18115731-18115588 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 466-601 |
| Cow position: | chr19:33586133-33586000 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 472-601 |
| Cow position: | chr19:42694418-42694548 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 89 |
| Conread position: | 472-601 |
| Cow position: | chr19:47187758-47187632 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 31 |
| Conread position: | 478-602 |
| Cow position: | chr19:32450478-32450601 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 481-595 |
| Cow position: | chr19:24358815-24358702 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 481-601 |
| Cow position: | chr19:7472798-7472918 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 108, 78 |
| Conread position: | 481-601 |
| Cow position: | chr19:55163907-55163789 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 483-592 |
| Cow position: | chr19:31762387-31762279 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 483-594 |
| Cow position: | chr19:54542243-54542133 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-595 |
| Cow position: | chr19:235993-235882 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-595 |
| Cow position: | chr19:475112-475223 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-595 |
| Cow position: | chr19:54006334-54006445 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-596 |
| Cow position: | chr19:2735934-2735822 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 483-596 |
| Cow position: | chr19:35429479-35429591 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-597 |
| Cow position: | chr19:40883783-40883667 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 483-600 |
| Cow position: | chr19:19805106-19804989 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 483-600 |
| Cow position: | chr19:19920064-19919948 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:634141-634258 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:1503498-1503615 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:1582468-1582351 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 483-601 |
| Cow position: | chr19:1901585-1901468 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 483-601 |
| Cow position: | chr19:2267402-2267285 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:3406931-3407048 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:4283547-4283430 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:5679900-5679783 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:5731105-5731222 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:5737392-5737275 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:6532210-6532327 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:7407318-7407435 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:8567111-8567228 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:10196159-10196276 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:10613976-10614093 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:18476528-18476411 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:20108131-20108248 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:21336816-21336699 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:24734888-24735005 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:26690044-26690161 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:26979478-26979361 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:28597121-28597238 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:29108315-29108432 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:30551466-30551583 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:35081980-35082097 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:35142905-35142789 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 483-601 |
| Cow position: | chr19:39924086-39924204 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:41223912-41223795 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:42156326-42156443 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr19:50724415-50724531 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 484-601 |
| Cow position: | chr19:28450605-28450724 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 484-602 |
| Cow position: | chr19:13447739-13447856 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 485-597 |
| Cow position: | chr19:5043947-5043835 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 485-600 |
| Cow position: | chr19:42725783-42725896 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 485-601 |
| Cow position: | chr19:12787796-12787912 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 485-601 |
| Cow position: | chr19:19963454-19963569 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 485-601 |
| Cow position: | chr19:42304869-42304753 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 485-602 |
| Cow position: | chr19:25085946-25086063 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 486-601 |
| Cow position: | chr19:3106579-3106465 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 486-601 |
| Cow position: | chr19:3510435-3510550 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 486-601 |
| Cow position: | chr19:9293679-9293794 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 486-601 |
| Cow position: | chr19:18016472-18016357 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 486-601 |
| Cow position: | chr19:33118971-33118856 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 486-601 |
| Cow position: | chr19:40439341-40439456 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 486-602 |
| Cow position: | chr19:38392220-38392336 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 487-601 |
| Cow position: | chr19:14572788-14572902 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 487-601 |
| Cow position: | chr19:29071300-29071187 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 5 |
| Conread position: | 498-595 |
| Cow position: | chr19:15071049-15071146 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 498-601 |
| Cow position: | chr19:736351-736454 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 498-601 |
| Cow position: | chr19:39077744-39077847 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 62 |
| Conread position: | 498-602 |
| Cow position: | chr19:15136894-15136998 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 501-595 |
| Cow position: | chr19:14581050-14581144 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 501-601 |
| Cow position: | chr19:3228236-3228336 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 501-601 |
| Cow position: | chr19:6949339-6949439 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 501-601 |
| Cow position: | chr19:11164415-11164315 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 501-601 |
| Cow position: | chr19:27095567-27095667 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 501-601 |
| Cow position: | chr19:37562568-37562468 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 501-601 |
| Cow position: | chr19:39960273-39960173 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 501-602 |
| Cow position: | chr19:4447980-4448080 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 501-602 |
| Cow position: | chr19:30460460-30460561 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 37, 61 |
| Conread position: | 501-602 |
| Cow position: | chr19:43440605-43440706 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 502-602 |
| Cow position: | chr19:42571814-42571714 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 504-601 |
| Cow position: | chr19:742734-742637 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 504-602 |
| Cow position: | chr19:42664382-42664284 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 505-602 |
| Cow position: | chr19:47670882-47670979 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 55 |
Show alignments to all cow chromosomes.