Cow genome map
| Conread name: | Ss1.1-unkn-F_1_A02.5 |
| Conread position: | 466-597 |
| Cow position: | chr25:11666078-11666209 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 470-601 |
| Cow position: | chr25:36392549-36392418 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 470-602 |
| Cow position: | chr25:24302847-24302714 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 477-594 |
| Cow position: | chr25:20075918-20076036 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 479-602 |
| Cow position: | chr25:394775-394898 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 81 |
| Conread position: | 480-602 |
| Cow position: | chr25:23829690-23829569 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 481-602 |
| Cow position: | chr25:32278604-32278483 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 482-602 |
| Cow position: | chr25:19367266-19367149 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 483-588 |
| Cow position: | chr25:36127474-36127370 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-597 |
| Cow position: | chr25:8919103-8918987 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 78 |
| Conread position: | 483-597 |
| Cow position: | chr25:17992713-17992600 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 483-600 |
| Cow position: | chr25:13955956-13955840 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:380535-380418 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:7068954-7069071 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:8935230-8935347 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:10158175-10158292 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:12753483-12753366 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:13962238-13962355 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:14555101-14555218 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:15005635-15005751 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 483-601 |
| Cow position: | chr25:15429246-15429129 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:15453091-15452974 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:17210701-17210584 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:18181551-18181668 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 483-601 |
| Cow position: | chr25:22198015-22198132 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:23601510-23601393 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:24654741-24654624 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:25480205-25480088 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 483-601 |
| Cow position: | chr25:25510323-25510440 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:25794478-25794361 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:25873559-25873442 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:26755901-26756018 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:27076491-27076608 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:27543576-27543458 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 483-601 |
| Cow position: | chr25:28275013-28274898 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:32609986-32609869 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:33990234-33990117 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:34121660-34121543 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:34502253-34502136 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:34672260-34672143 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:35446374-35446491 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:35554102-35554219 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:35649266-35649383 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr25:36351172-36351289 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-602 |
| Cow position: | chr25:8572441-8572324 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-602 |
| Cow position: | chr25:10137258-10137376 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 483-602 |
| Cow position: | chr25:10580660-10580542 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 483-602 |
| Cow position: | chr25:13332847-13332965 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-602 |
| Cow position: | chr25:35567456-35567338 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 484-601 |
| Cow position: | chr25:9395878-9395994 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 485-601 |
| Cow position: | chr25:10407990-10407873 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 485-601 |
| Cow position: | chr25:12841658-12841543 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 485-601 |
| Cow position: | chr25:17562499-17562615 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 485-601 |
| Cow position: | chr25:34122873-34122758 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 485-602 |
| Cow position: | chr25:17191726-17191610 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 486-601 |
| Cow position: | chr25:9055095-9055210 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 486-601 |
| Cow position: | chr25:10896296-10896182 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 6 |
| Conread position: | 486-601 |
| Cow position: | chr25:33901946-33901832 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 487-601 |
| Cow position: | chr25:17599061-17598948 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 488-602 |
| Cow position: | chr25:36871290-36871404 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 493-601 |
| Cow position: | chr25:27510824-27510717 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 501-601 |
| Cow position: | chr25:4842-4942 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 501-601 |
| Cow position: | chr25:12203914-12204014 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 501-601 |
| Cow position: | chr25:14834216-14834116 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 501-601 |
| Cow position: | chr25:15412471-15412571 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 59 |
| Conread position: | 501-601 |
| Cow position: | chr25:17994072-17993972 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 501-601 |
| Cow position: | chr25:19530925-19530825 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 501-601 |
| Cow position: | chr25:29525417-29525317 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 501-601 |
| Cow position: | chr25:35589520-35589620 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 501-602 |
| Cow position: | chr25:14569807-14569908 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 502-597 |
| Cow position: | chr25:11540576-11540671 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 84 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 33, 60 |
Show alignments to all cow chromosomes.