Cow genome map
| Conread name: | Ss1.1-unkn-F_1_A02.5 |
| Conread position: | 463-601 |
| Cow position: | chr27:31566040-31566175 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 466-601 |
| Cow position: | chr27:20135462-20135597 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 94 |
| Conread position: | 471-601 |
| Cow position: | chr27:21405879-21406007 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 472-601 |
| Cow position: | chr27:13876262-13876134 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 477-595 |
| Cow position: | chr27:27683501-27683617 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 481-601 |
| Cow position: | chr27:1636423-1636542 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 482-601 |
| Cow position: | chr27:18812214-18812096 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 483-594 |
| Cow position: | chr27:11413255-11413145 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 483-594 |
| Cow position: | chr27:22559604-22559494 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 483-595 |
| Cow position: | chr27:2557349-2557238 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 483-595 |
| Cow position: | chr27:20811061-20811172 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-595 |
| Cow position: | chr27:25800566-25800455 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 483-601 |
| Cow position: | chr27:165276-165160 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 483-601 |
| Cow position: | chr27:724189-724306 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:1481538-1481655 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:2001489-2001606 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:2900716-2900833 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:3653055-3652938 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:3989135-3989018 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:4768965-4769082 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:4882134-4882017 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:5861731-5861614 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 483-601 |
| Cow position: | chr27:8201581-8201698 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:8973090-8973207 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 483-601 |
| Cow position: | chr27:9333312-9333429 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 483-601 |
| Cow position: | chr27:10590149-10590266 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:11095164-11095047 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:11606241-11606124 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:11651741-11651858 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:12006793-12006910 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:12098118-12098001 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 483-601 |
| Cow position: | chr27:12147537-12147654 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:13353950-13354067 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:13422519-13422402 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:15033247-15033130 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:15178739-15178622 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:15272432-15272315 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 8 |
| Conread position: | 483-601 |
| Cow position: | chr27:15312724-15312607 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 483-601 |
| Cow position: | chr27:15316014-15315897 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 483-601 |
| Cow position: | chr27:16030753-16030636 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:16045375-16045492 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 483-601 |
| Cow position: | chr27:16794545-16794662 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:17403422-17403305 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:17476578-17476461 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:19487339-19487222 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:21349222-21349339 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:22499246-22499129 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 483-601 |
| Cow position: | chr27:23893979-23894096 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:26087748-26087631 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:26436177-26436295 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 483-601 |
| Cow position: | chr27:26545400-26545516 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 483-601 |
| Cow position: | chr27:27292038-27292155 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:28984411-28984528 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:29234931-29234814 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:29374261-29374144 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:29446460-29446343 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-601 |
| Cow position: | chr27:29796881-29796998 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 483-602 |
| Cow position: | chr27:23128978-23128860 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 484-602 |
| Cow position: | chr27:536982-536865 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 485-597 |
| Cow position: | chr27:26142319-26142207 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 485-601 |
| Cow position: | chr27:32439-32554 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 485-601 |
| Cow position: | chr27:15349282-15349396 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 486-600 |
| Cow position: | chr27:12751177-12751290 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 486-601 |
| Cow position: | chr27:17925594-17925707 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 486-602 |
| Cow position: | chr27:22179265-22179381 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 486-602 |
| Cow position: | chr27:27527683-27527799 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 487-601 |
| Cow position: | chr27:11470179-11470292 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 487-601 |
| Cow position: | chr27:20858766-20858880 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 487-602 |
| Cow position: | chr27:19931910-19931795 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 488-601 |
| Cow position: | chr27:26379852-26379739 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 492-601 |
| Cow position: | chr27:4389692-4389801 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 500-602 |
| Cow position: | chr27:27447835-27447937 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 501-596 |
| Cow position: | chr27:17332153-17332059 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 501-601 |
| Cow position: | chr27:526572-526671 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 501-601 |
| Cow position: | chr27:834035-834135 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 501-601 |
| Cow position: | chr27:3340264-3340165 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 501-601 |
| Cow position: | chr27:3650143-3650243 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 501-601 |
| Cow position: | chr27:24999228-24999328 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 501-601 |
| Cow position: | chr27:26785473-26785573 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 501-601 |
| Cow position: | chr27:29035720-29035620 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 501-601 |
| Cow position: | chr27:30684418-30684317 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 501-602 |
| Cow position: | chr27:1884731-1884630 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 501-602 |
| Cow position: | chr27:15407746-15407848 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 59 |
Show alignments to all cow chromosomes.