Cow genome map
| Conread name: | Ss1.1-unkn-MI-P-NA-aeg-h-08-1-UM.s1.ab1.3 |
| Conread position: | 457-623 |
| Cow position: | chr13:3314926-3314766 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 145, 19 |
| Conread position: | 461-626 |
| Cow position: | chr13:47007055-47006892 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 461-636 |
| Cow position: | chr13:9537544-9537369 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 461-636 |
| Cow position: | chr13:19393823-19393996 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 461-636 |
| Cow position: | chr13:22906961-22907139 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 461-636 |
| Cow position: | chr13:38612521-38612346 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 141, 44 |
| Conread position: | 461-636 |
| Cow position: | chr13:44323662-44323837 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 464-636 |
| Cow position: | chr13:14302686-14302858 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 464-636 |
| Cow position: | chr13:19322192-19322366 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 471-636 |
| Cow position: | chr13:11795407-11795572 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 131, 7 |
| Conread position: | 473-635 |
| Cow position: | chr13:17252664-17252825 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 129, 27 |
| Conread position: | 474-609 |
| Cow position: | chr13:33631861-33631990 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 477-624 |
| Cow position: | chr13:32905597-32905743 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 477-636 |
| Cow position: | chr13:60219385-60219224 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 479-632 |
| Cow position: | chr13:47189304-47189148 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 481-636 |
| Cow position: | chr13:4663902-4663749 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 483-636 |
| Cow position: | chr13:16344866-16345018 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 485-619 |
| Cow position: | chr13:46597863-46597996 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 485-636 |
| Cow position: | chr13:12572165-12572315 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 485-636 |
| Cow position: | chr13:12618396-12618247 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 485-636 |
| Cow position: | chr13:13903135-13902984 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 485-636 |
| Cow position: | chr13:41807460-41807612 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 487-636 |
| Cow position: | chr13:60426307-60426158 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 488-612 |
| Cow position: | chr13:25694747-25694623 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 488-622 |
| Cow position: | chr13:47590431-47590298 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 488-626 |
| Cow position: | chr13:6417818-6417681 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 116, 17 |
| Conread position: | 488-630 |
| Cow position: | chr13:42088206-42088348 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-634 |
| Cow position: | chr13:9301433-9301287 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-634 |
| Cow position: | chr13:32733911-32734057 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 488-635 |
| Cow position: | chr13:22085045-22084900 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 488-635 |
| Cow position: | chr13:57027504-57027356 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 124 |
| Conread position: | 488-636 |
| Cow position: | chr13:2800160-2800012 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 488-636 |
| Cow position: | chr13:2805006-2805154 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 137, 22 |
| Conread position: | 488-636 |
| Cow position: | chr13:6664852-6665000 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:15280562-15280415 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:15921184-15921332 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:30505164-30505312 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:31510422-31510271 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:31608161-31608309 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:33162216-33162069 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:33907486-33907634 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:34345578-34345430 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:43974678-43974824 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr13:47313419-47313570 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 126 |
| Conread position: | 488-636 |
| Cow position: | chr13:54238173-54238319 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 13 |
| Conread position: | 489-630 |
| Cow position: | chr13:1882238-1882378 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 490-634 |
| Cow position: | chr13:22774575-22774433 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 135, 11 |
| Conread position: | 490-635 |
| Cow position: | chr13:19424915-19424773 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 490-636 |
| Cow position: | chr13:9570741-9570885 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 139, 11 |
| Conread position: | 490-636 |
| Cow position: | chr13:54864218-54864072 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 491-636 |
| Cow position: | chr13:23266559-23266704 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 134, 14 |
| Conread position: | 492-636 |
| Cow position: | chr13:34038287-34038431 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 492-636 |
| Cow position: | chr13:47574298-47574444 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 119 |
| Conread position: | 493-636 |
| Cow position: | chr13:30241836-30241693 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 109, 12 |
| Conread position: | 496-636 |
| Cow position: | chr13:21905644-21905784 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 510-636 |
| Cow position: | chr13:15458959-15458832 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 92, 102 |
Show alignments to all cow chromosomes.