Cow genome map

Conread name: Ss1.1-unkn-MI-P-NA-aeg-h-08-1-UM.s1.ab1.3

Conread position: 461-636
Cow position: chr16:29538980-29539157 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 150

Conread position: 461-636
Cow position: chr16:54228454-54228635 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 16

Conread position: 470-635
Cow position: chr16:54231527-54231693 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 132, 140

Conread position: 472-633
Cow position: chr16:16032705-16032541 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 142

Conread position: 473-636
Cow position: chr16:45609226-45609063 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 130, 36

Conread position: 475-636
Cow position: chr16:45703982-45704143 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 79

Conread position: 476-635
Cow position: chr16:42074082-42074243 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 137

Conread position: 476-636
Cow position: chr16:47367803-47367640 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 141

Conread position: 479-624
Cow position: chr16:14029350-14029494 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 123, 14

Conread position: 479-635
Cow position: chr16:55911001-55911151 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 479-636
Cow position: chr16:15187876-15187718 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 123, 131

Conread position: 480-636
Cow position: chr16:15495264-15495108 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 26

Conread position: 481-623
Cow position: chr16:15805117-15804975 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 121, 131

Conread position: 481-636
Cow position: chr16:25444686-25444530 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 25

Conread position: 482-636
Cow position: chr16:4691219-4691068 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 23

Conread position: 483-636
Cow position: chr16:23563258-23563107 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 114

Conread position: 485-636
Cow position: chr16:41339-41188 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 117, 20

Conread position: 485-636
Cow position: chr16:12160478-12160629 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 117, 20

Conread position: 485-636
Cow position: chr16:41576049-41575897 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 117, 127

Conread position: 485-636
Cow position: chr16:45534269-45534116 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 128

Conread position: 487-615
Cow position: chr16:48341404-48341534 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 109

Conread position: 488-612
Cow position: chr16:39416210-39416335 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 28, 34

Conread position: 488-624
Cow position: chr16:20968085-20968220 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-626
Cow position: chr16:13043042-13042904 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 115, 131

Conread position: 488-633
Cow position: chr16:1563586-1563731 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-634
Cow position: chr16:48411437-48411291 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 17

Conread position: 488-635
Cow position: chr16:18694164-18694312 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 24

Conread position: 488-635
Cow position: chr16:19797890-19798040 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 21, 126

Conread position: 488-636
Cow position: chr16:193136-193284 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:237279-237132 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:417697-417549 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:840072-839925 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:1734541-1734393 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:1957924-1958073 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 17

Conread position: 488-636
Cow position: chr16:2480353-2480501 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:2724422-2724570 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:3148237-3148386 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 17

Conread position: 488-636
Cow position: chr16:4972725-4972872 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 136, 17

Conread position: 488-636
Cow position: chr16:5350706-5350854 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:5435627-5435479 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:6389854-6390002 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:7467410-7467264 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 137, 13

Conread position: 488-636
Cow position: chr16:7541283-7541136 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 113, 17

Conread position: 488-636
Cow position: chr16:8871639-8871789 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 19, 125

Conread position: 488-636
Cow position: chr16:10441040-10440893 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 114, 22

Conread position: 488-636
Cow position: chr16:11633042-11633190 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 114, 22

Conread position: 488-636
Cow position: chr16:12737084-12736934 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 488-636
Cow position: chr16:14351882-14352030 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:15369793-15369645 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:15979576-15979724 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:19409553-19409701 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 17

Conread position: 488-636
Cow position: chr16:21018361-21018213 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:23986115-23985967 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:26666506-26666358 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 137, 17

Conread position: 488-636
Cow position: chr16:27013199-27013051 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 114, 12

Conread position: 488-636
Cow position: chr16:27730579-27730727 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:28206309-28206457 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:28468321-28468469 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:31425860-31425712 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 102, 13

Conread position: 488-636
Cow position: chr16:39033543-39033691 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 137, 17

Conread position: 488-636
Cow position: chr16:42254516-42254659 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 137, 13

Conread position: 488-636
Cow position: chr16:42745682-42745830 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:43894459-43894607 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr16:46101817-46101965 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 114, 24

Conread position: 488-636
Cow position: chr16:47773065-47772918 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 13

Conread position: 488-636
Cow position: chr16:49142270-49142419 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 29, 13

Conread position: 488-636
Cow position: chr16:49515979-49516128 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 17

Conread position: 488-636
Cow position: chr16:51087584-51087437 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 13

Conread position: 488-636
Cow position: chr16:52527033-52526885 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 490-635
Cow position: chr16:45799150-45799002 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 126

Conread position: 490-635
Cow position: chr16:47626920-47627061 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 490-636
Cow position: chr16:28267917-28268062 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 112, 15

Conread position: 491-624
Cow position: chr16:49510018-49510151 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 14

Conread position: 491-636
Cow position: chr16:49577773-49577632 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 492-624
Cow position: chr16:55151128-55150997 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 13

Conread position: 492-636
Cow position: chr16:18205027-18204882 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 103

Conread position: 492-636
Cow position: chr16:24240602-24240746 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 110, 13

Conread position: 493-626
Cow position: chr16:2395178-2395045 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 109, 15

Conread position: 493-636
Cow position: chr16:30052744-30052599 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 120

Conread position: 493-636
Cow position: chr16:37058216-37058359 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 16, 111

Conread position: 493-636
Cow position: chr16:46223713-46223857 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 109, 121

Conread position: 501-623
Cow position: chr16:18948873-18948751 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 101, 111

Conread position: 501-636
Cow position: chr16:9417654-9417518 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 124, 0

Conread position: 501-636
Cow position: chr16:37925194-37925331 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 112

Conread position: 502-635
Cow position: chr16:42733497-42733631 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 505-608
Cow position: chr16:28112736-28112840 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 97, 0

Conread position: 509-636
Cow position: chr16:45654799-45654927 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 93, 103

Show alignments to all cow chromosomes.