Cow genome map
| Conread name: | Ss1.1-unkn-MI-P-NA-aeg-h-08-1-UM.s1.ab1.3 |
| Conread position: | 452-636 |
| Cow position: | chr17:27978504-27978318 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 465-627 |
| Cow position: | chr17:34317393-34317554 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 472-635 |
| Cow position: | chr17:2079017-2078854 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 154, 139 |
| Conread position: | 472-636 |
| Cow position: | chr17:36159657-36159820 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 473-626 |
| Cow position: | chr17:16416705-16416855 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 129, 11 |
| Conread position: | 475-636 |
| Cow position: | chr17:4211304-4211143 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 150, 21 |
| Conread position: | 476-633 |
| Cow position: | chr17:2033868-2033709 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 137 |
| Conread position: | 476-633 |
| Cow position: | chr17:41014532-41014379 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 483-626 |
| Cow position: | chr17:38629497-38629354 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 119, 129 |
| Conread position: | 483-636 |
| Cow position: | chr17:16118099-16118251 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 485-636 |
| Cow position: | chr17:6081855-6081703 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 485-636 |
| Cow position: | chr17:29156738-29156587 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 117, 23 |
| Conread position: | 485-636 |
| Cow position: | chr17:42313249-42313098 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 486-636 |
| Cow position: | chr17:33934459-33934607 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 15 |
| Conread position: | 487-636 |
| Cow position: | chr17:37415530-37415674 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 488-626 |
| Cow position: | chr17:3781013-3780875 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 102, 107 |
| Conread position: | 488-632 |
| Cow position: | chr17:731136-731280 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-632 |
| Cow position: | chr17:18099712-18099856 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-632 |
| Cow position: | chr17:40802109-40801966 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 488-635 |
| Cow position: | chr17:922984-922837 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 488-636 |
| Cow position: | chr17:979823-979971 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:1457018-1457166 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 138, 13 |
| Conread position: | 488-636 |
| Cow position: | chr17:1568859-1569006 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:2201659-2201511 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:2839380-2839236 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:3197268-3197416 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 488-636 |
| Cow position: | chr17:8223067-8222919 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:8450073-8449925 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 66 |
| Conread position: | 488-636 |
| Cow position: | chr17:11083773-11083921 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:11913388-11913535 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:13725624-13725478 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:14243188-14243040 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:15854097-15853949 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 488-636 |
| Cow position: | chr17:16903941-16903793 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:20272201-20272349 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:22774101-22774249 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr17:25739658-25739510 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 489-636 |
| Cow position: | chr17:13708066-13707919 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 133, 16 |
| Conread position: | 490-636 |
| Cow position: | chr17:2698912-2698769 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 132, 11 |
| Conread position: | 491-636 |
| Cow position: | chr17:16447123-16447268 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 134, 14 |
| Conread position: | 491-636 |
| Cow position: | chr17:21666358-21666213 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 111, 14 |
| Conread position: | 492-636 |
| Cow position: | chr17:997818-997962 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 493-636 |
| Cow position: | chr17:18198712-18198568 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 493-636 |
| Cow position: | chr17:22563501-22563358 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 109, 12 |
| Conread position: | 496-635 |
| Cow position: | chr17:9753140-9753001 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 117 |
| Conread position: | 497-636 |
| Cow position: | chr17:144853-144992 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 105, 89 |
| Conread position: | 497-636 |
| Cow position: | chr17:18242332-18242195 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 128, 11 |
| Conread position: | 498-633 |
| Cow position: | chr17:4085416-4085284 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 63 |
Show alignments to all cow chromosomes.