Cow genome map
| Conread name: | Ss1.1-unkn-MI-P-NA-aeg-h-08-1-UM.s1.ab1.3 |
| Conread position: | 461-636 |
| Cow position: | chr18:36512243-36512071 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 473-624 |
| Cow position: | chr18:23716063-23716213 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 45, 6 |
| Conread position: | 478-636 |
| Cow position: | chr18:5076589-5076745 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 147, 27 |
| Conread position: | 479-636 |
| Cow position: | chr18:29947047-29946887 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 17, 138 |
| Conread position: | 483-636 |
| Cow position: | chr18:28929850-28930001 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 119, 33 |
| Conread position: | 485-626 |
| Cow position: | chr18:42746811-42746671 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 117, 16 |
| Conread position: | 485-636 |
| Cow position: | chr18:6733377-6733528 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 487-626 |
| Cow position: | chr18:23044058-23043918 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 487-633 |
| Cow position: | chr18:45981081-45980936 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 487-635 |
| Cow position: | chr18:38341950-38342100 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 487-636 |
| Cow position: | chr18:2853202-2853351 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 487-636 |
| Cow position: | chr18:40484585-40484436 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 115, 23 |
| Conread position: | 488-606 |
| Cow position: | chr18:51679623-51679740 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 488-624 |
| Cow position: | chr18:41238116-41237981 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 488-634 |
| Cow position: | chr18:16025070-16025219 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 488-636 |
| Cow position: | chr18:4369762-4369910 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 488-636 |
| Cow position: | chr18:5536558-5536410 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 488-636 |
| Cow position: | chr18:14419562-14419414 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 488-636 |
| Cow position: | chr18:16173028-16173176 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr18:17670386-17670534 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr18:23802608-23802460 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 488-636 |
| Cow position: | chr18:27833841-27833989 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr18:27990342-27990194 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr18:28084632-28084484 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr18:28968704-28968852 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr18:29586027-29586175 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 488-636 |
| Cow position: | chr18:32122098-32122246 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr18:37692700-37692843 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 488-636 |
| Cow position: | chr18:38157957-38158105 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 114, 12 |
| Conread position: | 488-636 |
| Cow position: | chr18:41837505-41837653 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr18:52656379-52656231 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 489-624 |
| Cow position: | chr18:36778889-36778757 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 113, 12 |
| Conread position: | 490-624 |
| Cow position: | chr18:17335158-17335291 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 490-636 |
| Cow position: | chr18:43464187-43464335 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 491-636 |
| Cow position: | chr18:7649232-7649089 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 492-636 |
| Cow position: | chr18:36776857-36776713 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 9 |
| Conread position: | 493-606 |
| Cow position: | chr18:51713483-51713595 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 493-636 |
| Cow position: | chr18:6425407-6425550 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 493-636 |
| Cow position: | chr18:26335583-26335724 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 108, 94 |
| Conread position: | 493-636 |
| Cow position: | chr18:33851110-33850966 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 109, 119 |
| Conread position: | 493-636 |
| Cow position: | chr18:51487329-51487472 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 494-636 |
| Cow position: | chr18:1062136-1062280 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 119 |
| Conread position: | 494-636 |
| Cow position: | chr18:31996513-31996372 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 11 |
| Conread position: | 495-636 |
| Cow position: | chr18:44261646-44261503 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 496-636 |
| Cow position: | chr18:15688580-15688439 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 497-626 |
| Cow position: | chr18:26845656-26845527 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 120 |
| Conread position: | 501-633 |
| Cow position: | chr18:2439481-2439614 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 501-636 |
| Cow position: | chr18:24219119-24219255 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 101, 111 |
| Conread position: | 502-636 |
| Cow position: | chr18:36648966-36648832 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 123, 109 |
| Conread position: | 520-636 |
| Cow position: | chr18:33522772-33522655 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 89 |
Show alignments to all cow chromosomes.