Cow genome map
| Conread name: | Ss1.1-unkn-MI-P-NA-aeg-h-08-1-UM.s1.ab1.3 |
| Conread position: | 452-636 |
| Cow position: | chr21:42558474-42558290 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 454-626 |
| Cow position: | chr21:33832278-33832449 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 461-634 |
| Cow position: | chr21:9896053-9895875 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 155 |
| Conread position: | 461-636 |
| Cow position: | chr21:13111429-13111606 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 464-636 |
| Cow position: | chr21:18979483-18979649 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 161, 30 |
| Conread position: | 464-636 |
| Cow position: | chr21:36534520-36534692 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 138, 15 |
| Conread position: | 472-636 |
| Cow position: | chr21:48291672-48291839 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 142 |
| Conread position: | 473-624 |
| Cow position: | chr21:31252666-31252515 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 37 |
| Conread position: | 473-635 |
| Cow position: | chr21:8890561-8890398 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 473-635 |
| Cow position: | chr21:29665314-29665469 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 473-636 |
| Cow position: | chr21:9863268-9863431 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 473-636 |
| Cow position: | chr21:10239707-10239872 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 138 |
| Conread position: | 476-636 |
| Cow position: | chr21:28028305-28028146 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 126, 56 |
| Conread position: | 476-636 |
| Cow position: | chr21:42842613-42842773 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 19 |
| Conread position: | 479-636 |
| Cow position: | chr21:6765349-6765507 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 123, 133 |
| Conread position: | 479-636 |
| Cow position: | chr21:24887322-24887160 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 484-635 |
| Cow position: | chr21:12571483-12571335 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 26 |
| Conread position: | 484-636 |
| Cow position: | chr21:18285474-18285322 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 5, 25 |
| Conread position: | 485-636 |
| Cow position: | chr21:20263007-20263160 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 485-636 |
| Cow position: | chr21:20588373-20588223 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 27 |
| Conread position: | 485-636 |
| Cow position: | chr21:28442110-28441959 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 110 |
| Conread position: | 488-634 |
| Cow position: | chr21:12076068-12076212 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 488-635 |
| Cow position: | chr21:21000716-21000861 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 66 |
| Conread position: | 488-635 |
| Cow position: | chr21:28881332-28881185 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 488-635 |
| Cow position: | chr21:33728771-33728624 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 488-636 |
| Cow position: | chr21:149811-149663 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 488-636 |
| Cow position: | chr21:4722301-4722156 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 137, 20 |
| Conread position: | 488-636 |
| Cow position: | chr21:10853929-10853781 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:13302859-13302712 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 488-636 |
| Cow position: | chr21:15546027-15546176 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 488-636 |
| Cow position: | chr21:17144352-17144204 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:22463856-22463708 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 137, 84 |
| Conread position: | 488-636 |
| Cow position: | chr21:22855561-22855414 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 13 |
| Conread position: | 488-636 |
| Cow position: | chr21:27065935-27066083 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:27608038-27608186 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:28210528-28210380 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:30595426-30595574 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:31276006-31275858 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:33257220-33257072 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:33983609-33983759 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 125 |
| Conread position: | 488-636 |
| Cow position: | chr21:39059666-39059813 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:39764188-39764040 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 488-636 |
| Cow position: | chr21:42364598-42364452 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 488-636 |
| Cow position: | chr21:43403774-43403922 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:44762020-44762165 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 488-636 |
| Cow position: | chr21:45782070-45782216 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:47649006-47648860 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr21:48108515-48108667 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 127 |
| Conread position: | 489-636 |
| Cow position: | chr21:16768459-16768607 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 17 |
| Conread position: | 491-633 |
| Cow position: | chr21:46830904-46831046 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 491-636 |
| Cow position: | chr21:28915315-28915460 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 111, 14 |
| Conread position: | 491-636 |
| Cow position: | chr21:31512610-31512755 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 19 |
| Conread position: | 492-615 |
| Cow position: | chr21:38900104-38899982 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 492-615 |
| Cow position: | chr21:48234658-48234785 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 492-636 |
| Cow position: | chr21:3253293-3253150 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 492-636 |
| Cow position: | chr21:4559413-4559558 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 110, 118 |
| Conread position: | 492-636 |
| Cow position: | chr21:34657651-34657507 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 102 |
| Conread position: | 492-636 |
| Cow position: | chr21:46974074-46974217 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 492-636 |
| Cow position: | chr21:47360511-47360657 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 493-633 |
| Cow position: | chr21:27342743-27342882 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 39 |
| Conread position: | 493-635 |
| Cow position: | chr21:44861938-44862078 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 132, 17 |
| Conread position: | 493-636 |
| Cow position: | chr21:16278061-16277918 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 109, 76 |
| Conread position: | 493-636 |
| Cow position: | chr21:23501016-23501160 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 103, 119 |
| Conread position: | 493-636 |
| Cow position: | chr21:28810929-28811071 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 494-636 |
| Cow position: | chr21:37323143-37323287 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 496-636 |
| Cow position: | chr21:24697813-24697673 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 497-636 |
| Cow position: | chr21:29213514-29213379 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 105, 64 |
| Conread position: | 502-634 |
| Cow position: | chr21:5596441-5596308 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 110 |
| Conread position: | 502-635 |
| Cow position: | chr21:4191944-4191811 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 82 |
| Conread position: | 508-636 |
| Cow position: | chr21:17207823-17207694 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 94, 102 |
| Conread position: | 519-636 |
| Cow position: | chr21:1058096-1057978 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 93 |
Show alignments to all cow chromosomes.