Cow genome map

Conread name: Ss1.1-unkn-MI-P-NA-aeg-h-08-1-UM.s1.ab1.3

Conread position: 353-626
Cow position: chr22:28043949-28043673 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 184
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 49

Conread position: 461-636
Cow position: chr22:3303112-3303287 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 135, 16

Conread position: 461-636
Cow position: chr22:5338303-5338483 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 81, 9

Conread position: 461-636
Cow position: chr22:29397602-29397427 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 22

Conread position: 461-636
Cow position: chr22:33951439-33951616 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 46

Conread position: 464-636
Cow position: chr22:13696407-13696578 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 161, 13

Conread position: 467-636
Cow position: chr22:11837914-11838083 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 135, 38

Conread position: 468-636
Cow position: chr22:41271695-41271861 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 43

Conread position: 473-636
Cow position: chr22:31306736-31306572 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 33

Conread position: 474-636
Cow position: chr22:10361426-10361266 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 128, 26

Conread position: 476-626
Cow position: chr22:6493375-6493224 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 137

Conread position: 476-627
Cow position: chr22:48271527-48271681 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 478-636
Cow position: chr22:3065303-3065460 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 117, 7

Conread position: 478-636
Cow position: chr22:18811414-18811572 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 124, 27

Conread position: 478-636
Cow position: chr22:34901363-34901206 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 124, 23

Conread position: 481-623
Cow position: chr22:14510019-14510160 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 121, 31

Conread position: 483-636
Cow position: chr22:27335227-27335077 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 124, 22

Conread position: 483-636
Cow position: chr22:31598806-31598654 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 30

Conread position: 483-636
Cow position: chr22:43261363-43261207 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 484-636
Cow position: chr22:2415393-2415241 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 118, 21

Conread position: 485-635
Cow position: chr22:21935375-21935526 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 127

Conread position: 485-636
Cow position: chr22:4292136-4291983 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 11

Conread position: 485-636
Cow position: chr22:35755198-35755349 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 117, 23

Conread position: 485-636
Cow position: chr22:47957773-47957922 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 117, 15

Conread position: 487-636
Cow position: chr22:11305378-11305229 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 115, 70

Conread position: 488-609
Cow position: chr22:34894040-34893919 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-624
Cow position: chr22:1517550-1517685 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 488-633
Cow position: chr22:37323754-37323610 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 102, 17

Conread position: 488-635
Cow position: chr22:31416935-31416787 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 127

Conread position: 488-635
Cow position: chr22:36503218-36503361 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 113, 13

Conread position: 488-636
Cow position: chr22:52001-51854 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:799356-799205 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 45, 20

Conread position: 488-636
Cow position: chr22:1310452-1310600 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 113, 17

Conread position: 488-636
Cow position: chr22:3433472-3433620 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 114, 22

Conread position: 488-636
Cow position: chr22:5624152-5624300 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:8505165-8505013 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 127

Conread position: 488-636
Cow position: chr22:8773514-8773662 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 137, 17

Conread position: 488-636
Cow position: chr22:9269690-9269542 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:15308471-15308619 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 22

Conread position: 488-636
Cow position: chr22:15858270-15858120 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 123

Conread position: 488-636
Cow position: chr22:17325011-17325159 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 24

Conread position: 488-636
Cow position: chr22:18807743-18807891 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:21592914-21592766 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:22048709-22048857 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:25241041-25241189 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:27386065-27386213 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:29464381-29464234 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 114, 24

Conread position: 488-636
Cow position: chr22:29553693-29553840 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 22

Conread position: 488-636
Cow position: chr22:31316034-31315886 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:31331381-31331529 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:32210103-32209955 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 137, 17

Conread position: 488-636
Cow position: chr22:33448813-33448960 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:37290363-37290511 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:38439881-38440027 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr22:41846078-41846226 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 113, 17

Conread position: 490-633
Cow position: chr22:582020-582159 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 135, 15

Conread position: 490-634
Cow position: chr22:33113624-33113479 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 122

Conread position: 490-636
Cow position: chr22:7280032-7279885 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 31, 119

Conread position: 491-632
Cow position: chr22:5836034-5835894 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 134, 13

Conread position: 491-635
Cow position: chr22:15872280-15872135 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 121

Conread position: 491-635
Cow position: chr22:33093825-33093682 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 10

Conread position: 491-636
Cow position: chr22:6924519-6924374 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 14

Conread position: 491-636
Cow position: chr22:8417739-8417595 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 14

Conread position: 491-636
Cow position: chr22:34171938-34171793 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 111, 14

Conread position: 492-612
Cow position: chr22:14699626-14699747 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 492-624
Cow position: chr22:23077546-23077677 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 110, 16

Conread position: 492-636
Cow position: chr22:22285482-22285338 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 110, 13

Conread position: 492-636
Cow position: chr22:23582327-23582471 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 133, 13

Conread position: 492-636
Cow position: chr22:32019076-32019219 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 110, 9

Conread position: 492-636
Cow position: chr22:43045228-43045371 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 110, 13

Conread position: 492-636
Cow position: chr22:44924846-44924988 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 8

Conread position: 493-635
Cow position: chr22:11746633-11746774 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 133, 12

Conread position: 493-635
Cow position: chr22:36540883-36541024 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 109, 8

Conread position: 493-636
Cow position: chr22:8480912-8480768 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 109, 119

Conread position: 493-636
Cow position: chr22:11988218-11988362 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 97, 103

Conread position: 493-636
Cow position: chr22:39465055-39465198 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 109, 12

Conread position: 495-636
Cow position: chr22:645458-645600 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 107, 117

Conread position: 496-636
Cow position: chr22:533582-533443 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 106, 13

Conread position: 500-624
Cow position: chr22:42976210-42976088 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 102, 110

Conread position: 501-624
Cow position: chr22:29633134-29633256 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 101, 113

Conread position: 501-635
Cow position: chr22:36357535-36357401 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 124, 112

Conread position: 501-636
Cow position: chr22:1591515-1591380 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 101, 53

Conread position: 501-636
Cow position: chr22:5929422-5929560 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 115

Conread position: 501-636
Cow position: chr22:29062267-29062131 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 101, 111

Conread position: 501-636
Cow position: chr22:43744355-43744490 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 54

Conread position: 505-636
Cow position: chr22:33200754-33200622 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 107

Conread position: 521-636
Cow position: chr22:32660734-32660618 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 91

Show alignments to all cow chromosomes.