Cow genome map
| Conread name: | Ss1.1-unkn-MI-P-NA-aeg-h-08-1-UM.s1.ab1.3 |
| Conread position: | 460-636 |
| Cow position: | chr23:6173507-6173684 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 142, 152 |
| Conread position: | 461-626 |
| Cow position: | chr23:17404125-17403961 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 141, 16 |
| Conread position: | 461-636 |
| Cow position: | chr23:2023573-2023748 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 461-636 |
| Cow position: | chr23:29471796-29471973 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 461-636 |
| Cow position: | chr23:30634082-30634258 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 473-636 |
| Cow position: | chr23:39108321-39108483 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 484-624 |
| Cow position: | chr23:26066402-26066265 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 484-636 |
| Cow position: | chr23:35937307-35937155 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 106, 111 |
| Conread position: | 487-626 |
| Cow position: | chr23:26840655-26840515 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 487-636 |
| Cow position: | chr23:6223302-6223154 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 487-636 |
| Cow position: | chr23:40553637-40553786 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 488-615 |
| Cow position: | chr23:20541452-20541326 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 488-624 |
| Cow position: | chr23:10013819-10013683 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 488-624 |
| Cow position: | chr23:30243971-30243837 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 488-626 |
| Cow position: | chr23:615931-616067 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 488-633 |
| Cow position: | chr23:5624095-5624239 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-634 |
| Cow position: | chr23:29625462-29625317 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-635 |
| Cow position: | chr23:26230614-26230467 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 488-636 |
| Cow position: | chr23:344985-345133 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 17 |
| Conread position: | 488-636 |
| Cow position: | chr23:1959611-1959463 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr23:11782270-11782122 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr23:14839706-14839852 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 488-636 |
| Cow position: | chr23:15180442-15180295 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 488-636 |
| Cow position: | chr23:15529071-15528923 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr23:19493332-19493185 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 19 |
| Conread position: | 488-636 |
| Cow position: | chr23:24098612-24098464 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 488-636 |
| Cow position: | chr23:25357831-25357682 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 124 |
| Conread position: | 488-636 |
| Cow position: | chr23:28915812-28915666 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 488-636 |
| Cow position: | chr23:30623017-30623164 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 488-636 |
| Cow position: | chr23:36027768-36027916 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr23:36308689-36308542 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 134, 113 |
| Conread position: | 488-636 |
| Cow position: | chr23:37199026-37199174 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr23:39389553-39389405 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 490-636 |
| Cow position: | chr23:11405203-11405348 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 112, 18 |
| Conread position: | 490-636 |
| Cow position: | chr23:16610916-16611062 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 491-636 |
| Cow position: | chr23:2791292-2791437 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 111, 14 |
| Conread position: | 491-636 |
| Cow position: | chr23:7359937-7359792 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 491-636 |
| Cow position: | chr23:25412019-25412165 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 14 |
| Conread position: | 492-636 |
| Cow position: | chr23:40825279-40825135 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 493-624 |
| Cow position: | chr23:362162-362293 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-632 |
| Cow position: | chr23:1321917-1322056 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 109, 12 |
| Conread position: | 493-635 |
| Cow position: | chr23:12978233-12978091 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 132, 12 |
| Conread position: | 493-636 |
| Cow position: | chr23:14738378-14738235 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 493-636 |
| Cow position: | chr23:25554072-25553926 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 493-636 |
| Cow position: | chr23:29446470-29446616 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 109, 12 |
| Conread position: | 494-636 |
| Cow position: | chr23:23470205-23470061 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 108 |
| Conread position: | 501-636 |
| Cow position: | chr23:10424398-10424267 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 505-636 |
| Cow position: | chr23:31896899-31896767 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 107 |
| Conread position: | 507-636 |
| Cow position: | chr23:33817913-33817786 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 95, 42 |
Show alignments to all cow chromosomes.