Cow genome map
| Conread name: | Ss1.1-unkn-MI-P-NA-aeg-h-08-1-UM.s1.ab1.3 |
| Conread position: | 461-635 |
| Cow position: | chr25:39386527-39386702 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 461-636 |
| Cow position: | chr25:4522510-4522685 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 461-636 |
| Cow position: | chr25:20613838-20613661 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 461-636 |
| Cow position: | chr25:35567585-35567760 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 141, 9 |
| Conread position: | 461-636 |
| Cow position: | chr25:41121306-41121130 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 464-611 |
| Cow position: | chr25:30812275-30812128 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 479-635 |
| Cow position: | chr25:20006435-20006276 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 32 |
| Conread position: | 481-626 |
| Cow position: | chr25:9595598-9595453 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 485-635 |
| Cow position: | chr25:13941457-13941607 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 487-636 |
| Cow position: | chr25:16430743-16430892 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 112, 18 |
| Conread position: | 488-633 |
| Cow position: | chr25:23366941-23366793 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-635 |
| Cow position: | chr25:18474472-18474325 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 488-636 |
| Cow position: | chr25:12938933-12939081 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 488-636 |
| Cow position: | chr25:14790507-14790358 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 488-636 |
| Cow position: | chr25:16401617-16401766 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr25:16922518-16922664 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 488-636 |
| Cow position: | chr25:17992873-17993021 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 488-636 |
| Cow position: | chr25:18486733-18486585 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 108, 20 |
| Conread position: | 488-636 |
| Cow position: | chr25:22151379-22151231 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr25:24654900-24655048 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr25:25510163-25510016 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr25:26282298-26282150 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 488-636 |
| Cow position: | chr25:28275394-28275542 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr25:34013480-34013628 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr25:35754971-35755118 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 488-636 |
| Cow position: | chr25:40322015-40322164 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 124 |
| Conread position: | 490-609 |
| Cow position: | chr25:23739969-23740089 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 490-624 |
| Cow position: | chr25:18023024-18022892 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 490-636 |
| Cow position: | chr25:10012787-10012936 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 492-636 |
| Cow position: | chr25:9395679-9395535 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 110, 62 |
| Conread position: | 492-636 |
| Cow position: | chr25:15368008-15367863 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 111, 120 |
| Conread position: | 492-636 |
| Cow position: | chr25:18265459-18265313 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 124 |
| Conread position: | 493-598 |
| Cow position: | chr25:29216858-29216964 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 493-636 |
| Cow position: | chr25:20495816-20495670 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 121 |
| Conread position: | 494-636 |
| Cow position: | chr25:17562307-17562166 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 11 |
| Conread position: | 496-624 |
| Cow position: | chr25:24459454-24459582 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 106, 116 |
| Conread position: | 497-636 |
| Cow position: | chr25:23361751-23361612 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 105, 117 |
| Conread position: | 501-622 |
| Cow position: | chr25:35039618-35039740 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 501-633 |
| Cow position: | chr25:12756158-12756291 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 101, 111 |
| Conread position: | 501-636 |
| Cow position: | chr25:20075739-20075602 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 101, 112 |
| Conread position: | 505-636 |
| Cow position: | chr25:8080121-8079989 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 506-636 |
| Cow position: | chr25:25826707-25826577 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 108 |
Show alignments to all cow chromosomes.