Cow genome map

Conread name: Ss1.1-unkn-MI-P-NA-aeg-h-08-1-UM.s1.ab1.3

Conread position: 461-636
Cow position: chr5:23845202-23845379 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 46

Conread position: 464-624
Cow position: chr5:53834998-53834838 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 43

Conread position: 464-636
Cow position: chr5:31217437-31217265 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 138, 19

Conread position: 465-636
Cow position: chr5:46707981-46707810 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 24, 37

Conread position: 470-636
Cow position: chr5:2917801-2917635 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 36

Conread position: 471-636
Cow position: chr5:1344549-1344717 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 116

Conread position: 473-599
Cow position: chr5:48405685-48405811 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 11

Conread position: 478-636
Cow position: chr5:32964729-32964887 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 10

Conread position: 479-636
Cow position: chr5:14313601-14313443 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 27

Conread position: 479-636
Cow position: chr5:29558924-29558764 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 73, 56

Conread position: 480-636
Cow position: chr5:39448216-39448373 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 19, 117

Conread position: 481-634
Cow position: chr5:73485557-73485711 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 32

Conread position: 481-636
Cow position: chr5:48225251-48225403 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 10, 21

Conread position: 482-636
Cow position: chr5:48574499-48574654 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 120, 130

Conread position: 483-636
Cow position: chr5:18901645-18901493 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 119, 22

Conread position: 484-636
Cow position: chr5:47601093-47600941 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 118, 55

Conread position: 485-635
Cow position: chr5:65593219-65593070 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 20

Conread position: 485-636
Cow position: chr5:19978590-19978741 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 117, 20

Conread position: 485-636
Cow position: chr5:27491301-27491150 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 140, 20

Conread position: 485-636
Cow position: chr5:34300206-34300053 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 57, 111

Conread position: 485-636
Cow position: chr5:47855151-47855000 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 116, 20

Conread position: 485-636
Cow position: chr5:68593745-68593596 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 116, 102

Conread position: 487-615
Cow position: chr5:4165947-4165820 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 115, 18

Conread position: 487-636
Cow position: chr5:15855910-15856056 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 115, 18

Conread position: 487-636
Cow position: chr5:25496089-25496236 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 103, 13

Conread position: 487-636
Cow position: chr5:50599379-50599232 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 115, 14

Conread position: 488-624
Cow position: chr5:14551280-14551415 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 114, 17

Conread position: 488-635
Cow position: chr5:7808571-7808719 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 114, 130

Conread position: 488-635
Cow position: chr5:58770551-58770698 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:279859-280007 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:1338600-1338748 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:3500807-3500955 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 22

Conread position: 488-636
Cow position: chr5:3789544-3789395 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:6151511-6151659 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:7042562-7042416 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 137, 17

Conread position: 488-636
Cow position: chr5:7396564-7396416 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 17

Conread position: 488-636
Cow position: chr5:7498664-7498812 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:10853513-10853661 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 110, 24

Conread position: 488-636
Cow position: chr5:14558137-14558285 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:14636258-14636406 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:16085489-16085637 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:18404737-18404883 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:21189539-21189394 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 137, 17

Conread position: 488-636
Cow position: chr5:24299334-24299186 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:29742240-29742388 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:30582647-30582499 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:36406479-36406328 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 15, 127

Conread position: 488-636
Cow position: chr5:39749122-39749269 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 29, 13

Conread position: 488-636
Cow position: chr5:41951744-41951891 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 114, 92

Conread position: 488-636
Cow position: chr5:43984405-43984257 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 114, 24

Conread position: 488-636
Cow position: chr5:44709051-44709199 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 22

Conread position: 488-636
Cow position: chr5:46676934-46676786 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 17

Conread position: 488-636
Cow position: chr5:47343194-47343046 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 22

Conread position: 488-636
Cow position: chr5:47471717-47471569 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 17

Conread position: 488-636
Cow position: chr5:49117030-49117178 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:49221178-49221326 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 137, 22

Conread position: 488-636
Cow position: chr5:52829466-52829613 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:53185182-53185330 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 17

Conread position: 488-636
Cow position: chr5:54868537-54868389 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 13

Conread position: 488-636
Cow position: chr5:64778680-64778828 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 17

Conread position: 488-636
Cow position: chr5:72007569-72007720 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 21, 126

Conread position: 490-612
Cow position: chr5:67654642-67654520 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 88, 11

Conread position: 490-633
Cow position: chr5:22857314-22857457 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 113, 15

Conread position: 490-635
Cow position: chr5:51070503-51070358 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 113, 15

Conread position: 490-636
Cow position: chr5:17027385-17027241 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 90

Conread position: 490-636
Cow position: chr5:34523926-34524067 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 110, 11

Conread position: 490-636
Cow position: chr5:34678194-34678051 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 113, 15

Conread position: 491-632
Cow position: chr5:72901562-72901426 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 491-636
Cow position: chr5:34527884-34527740 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 134, 17

Conread position: 492-626
Cow position: chr5:72345525-72345658 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 74, 13

Conread position: 492-636
Cow position: chr5:7175615-7175471 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 110, 13

Conread position: 492-636
Cow position: chr5:40828062-40828206 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 86

Conread position: 492-636
Cow position: chr5:46625959-46626104 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 492-636
Cow position: chr5:63312208-63312350 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 133, 9

Conread position: 493-635
Cow position: chr5:55985963-55985822 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 12

Conread position: 493-636
Cow position: chr5:5787014-5787157 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 109, 12

Conread position: 493-636
Cow position: chr5:14833323-14833466 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 74

Conread position: 493-636
Cow position: chr5:32697475-32697619 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 82, 61

Conread position: 493-636
Cow position: chr5:45941681-45941825 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 109, 119

Conread position: 493-636
Cow position: chr5:55631380-55631237 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 109, 12

Conread position: 494-635
Cow position: chr5:59771361-59771222 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 113, 7

Conread position: 494-636
Cow position: chr5:46797215-46797073 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 11

Conread position: 499-636
Cow position: chr5:34669777-34669916 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 114

Conread position: 501-636
Cow position: chr5:40270535-40270671 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 99, 111

Conread position: 501-636
Cow position: chr5:51502193-51502058 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 101, 111

Conread position: 501-636
Cow position: chr5:54454804-54454669 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 111

Conread position: 501-636
Cow position: chr5:66256941-66256804 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 502-636
Cow position: chr5:26466932-26466798 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 97, 112

Conread position: 505-634
Cow position: chr5:25920482-25920612 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 97, 107

Conread position: 505-635
Cow position: chr5:18883305-18883433 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 97, 107

Conread position: 505-636
Cow position: chr5:32081243-32081375 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 62

Conread position: 509-604
Cow position: chr5:35446329-35446424 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-636
Cow position: chr5:28947137-28947238 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 76

Show alignments to all cow chromosomes.