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Cow genome map

           
Conread name:
           
Ss1.1-unkn-MI-P-NA-afr-a-10-1-UM.s1.3
        

               
Conread position:
               
1-120
               

               
Cow position:
               
chr21:2767904-2767786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr21:4267623-4267746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr21:33350303-33350442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr21:26241140-26241283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr21:4812404-4812256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr21:38450082-38449930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr21:14293768-14293613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr21:21907979-21907823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr21:24111029-24110867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr21:2293263-2293091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
42, 112
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr21:28026725-28026898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr21:23603744-23603919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr21:20243693-20243503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr21:34835855-34835664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
133, 16
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr21:2261081-2260876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
127, 16
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr21:31661306-31661508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr21:28768836-28768638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr21:13585519-13585320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
90, 113
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr21:18818732-18818530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr21:40128413-40128214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr21:31911-32113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr21:32560038-32559835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr21:9218535-9218732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
169, 16
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr21:9438377-9438587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
47, 137
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr21:37342256-37342057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr21:39583880-39583680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr21:10516182-10515981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr21:39069792-39069588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr21:297323-297526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr21:24418382-24418172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr21:25473102-25473308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr21:48531110-48531317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr21:2927632-2927424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
158, 15
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr21:3047264-3047473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr21:6051077-6051293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr21:19436803-19436589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr21:21000455-21000241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr21:31661656-31661870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 112
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr21:44861662-44861446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr21:31040839-31040620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr21:44761756-44761539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr21:22464389-22464611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
159, 16
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr21:2810513-2810284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
195, 16
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr21:21027388-21027626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
71, 135
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr21:36115933-36116162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr21:42443007-42442774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr21:29999981-29999746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:168046-167809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr21:13163524-13163749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
202, 16
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr21:471223-471474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr21:29839765-29840005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr21:7666456-7666213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr21:14727656-14727896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr21:19237318-19237567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr21:17482359-17482610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr21:6697491-6697234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr21:32190774-32191039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
245, 16
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr21:2847437-2847163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr21:16293015-16293304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr21:17208096-17208361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr21:44657918-44658191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr21:9006183-9006456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr21:27712836-27712553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 20
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr21:2657195-2657473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr21:8274585-8274302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:6623749-6624034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:4559143-4558849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr21:19882315-19882013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:16278311-16278604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 16
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr21:29908153-29907852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr21:9863024-9862725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr21:24297160-24296865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr21:27341985-27341697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr21:36657169-36657474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:2871116-2870813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:5840773-5841075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:10571200-10571504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 16
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:12507006-12507314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:27287905-27288209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 16
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:30250605-30250306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:31512341-31512039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:34684952-34685253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr21:1803154-1802848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr21:20234678-20234371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 193
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr21:13764579-13764888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr21:22856780-22857093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr21:33832048-33831734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr21:6297552-6297875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr21:20588631-20588954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 20
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr21:44281233-44280909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr21:684088-684402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr21:2935150-2934828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
67, 83
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr21:150076-150402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr21:9201787-9202114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr21:12100880-12101212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:47823672-47823341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr21:45263420-45263089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr21:12465950-12466291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr21:25158494-25158831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 6
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr21:20575860-20575518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr21:34738194-34738546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr21:4098489-4098818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
194, 16
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr21:24698077-24698439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr21:28210786-28211150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 16
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr21:31975072-31975430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr21:36505636-36505283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
232, 16
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr21:15742503-15742148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr21:18979255-18978896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 16
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr21:20549322-20548960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr21:22140742-22140388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr21:25603586-25603233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:13300752-13301103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:17144748-17145104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 16
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:26399855-26399499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 16
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:29253287-29252935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:32447142-32447498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 16
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:33316435-33316088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
291, 16
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr21:30354775-30355127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
199, 16
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr21:23293554-23293208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr21:48459269-48458916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 207
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:26681338-26680986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
284, 16
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr21:36711793-36712161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr21:3920612-3920248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr21:31576108-31576473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr21:4279235-4279600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 16
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr21:13111197-13110818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 16
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr21:27376050-27376428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 16
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr21:15545762-15545390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr21:34254679-34254300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 16
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr21:4732617-4732235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 16
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr21:19698959-19698579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 59
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr21:28259590-28259980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr21:39700476-39700091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 16
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:393622-394006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 16
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:2420105-2420482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 16
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:12153735-12154120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:17433652-17433271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr21:24130686-24131061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 16
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr21:37352811-37352446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
265, 16
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr21:8126185-8125812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
280, 16
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr21:28599371-28599764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr21:19957831-19958215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 11
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr21:1483106-1483484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
300, 20
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr21:1463833-1464224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 12
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr21:3813867-3813487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr21:44671352-44671748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:4282264-4281876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:5566578-5566995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 209
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:29214555-29214156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:34251933-34251541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr21:37874117-37874517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 197
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:16695971-16696365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 15
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:23606271-23606670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:25344476-25344868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:26744357-26743940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 16
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:26835693-26835294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:27607763-27607362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 16
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:28617201-28617585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 185
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:33933784-33933383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 16
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:38691794-38692183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 74
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:38900384-38900774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr21:47649271-47649668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr21:44331691-44331284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr21:21967084-21967470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 11
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr21:38917835-38918214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 16
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr21:19974350-19974748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
193, 21
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr21:1196467-1196873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 16
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr21:2495571-2495168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 16
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr21:4189440-4189837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 16
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr21:5021068-5021474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 16
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr21:7717187-7716783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:363253-363652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:4079954-4080361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:12365987-12366384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:13750988-13751389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
163, 21
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:17411067-17410654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:17417154-17416759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
172, 21
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:18934528-18934921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:32535585-32535977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:33420116-33419721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:34658638-34659036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr21:42464247-42463832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr21:4428279-4428687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr21:612167-611764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 16
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr21:13728157-13727757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr21:48262730-48263128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:725288-724881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:2877912-2877502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:9209236-9209640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:10854186-10854598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:20925905-20925501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:22855822-22856225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:28512141-28512534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr21:32297902-32297503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 16
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr21:18935372-18935765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr21:21170345-21169929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 77
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr21:21785487-21785069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 16
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr21:27613865-27614303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 429
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr21:46912143-46912566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr21:43914-44331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr21:4277002-4276569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
190, 16
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:5455390-5454957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:23801511-23801096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
356, 21
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:30849337-30848916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 16
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:34391366-34390943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 20
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:46973535-46973101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr21:48484840-48484415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 16
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr21:13704085-13703652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
303, 21
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr21:24222939-24222505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 16
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr21:17412692-17412265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 16
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr21:33209799-33210240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 16
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr21:37942090-37941647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 192
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr21:17434719-17434274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
171, 21
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr21:36756208-36756643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 16
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr21:23192919-23192465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 201
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr21:29942596-29943062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
1-464
               

               
Cow position:
               
chr21:44514867-44515322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 16
               

               
Conread position:
               
1-465
               

               
Cow position:
               
chr21:37299066-37299521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 20
               

               
Conread position:
               
1-466
               

               
Cow position:
               
chr21:21216541-21216081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
403, 16
               

               
Conread position:
               
1-467
               

               
Cow position:
               
chr21:3236129-3236587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr21:642946-643386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 16
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr21:13897793-13898250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 16
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr21:27230191-27229729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 16
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr21:31691096-31691547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 21
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr21:33983209-33982745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 15
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr21:33997624-33997165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr21:42540621-42540160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr21:42914143-42913681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 15
               

               
Conread position:
               
1-471
               

               
Cow position:
               
chr21:5238006-5238452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
406, 16
               

               
Conread position:
               
1-471
               

               
Cow position:
               
chr21:24796437-24795969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 176
               

               
Conread position:
               
1-473
               

               
Cow position:
               
chr21:2904863-2904403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr21:4585747-4585291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 16
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr21:18289264-18289731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
1-475
               

               
Cow position:
               
chr21:44826265-44825818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr21:6765100-6764630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr21:24606996-24607456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr21:33729035-33729500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 15
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr21:9711115-9710630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
2-141
               

               
Cow position:
               
chr21:43266562-43266424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-184
               

               
Cow position:
               
chr21:33107563-33107382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr21:6102723-6102535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr21:8686632-8686446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr21:23341582-23341769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
145, 15
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr21:39640914-39641102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
2-199
               

               
Cow position:
               
chr21:39508035-39507844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr21:10000688-10000490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr21:36956559-36956764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr21:12075806-12075610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr21:1752321-1752527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr21:16889913-16889697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr21:13257271-13257488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr21:3496575-3496357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr21:11083024-11082801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr21:34899754-34899522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:6063684-6063931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
127, 15
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:6863072-6862843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:11353423-11353658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:19350930-19350696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:25738276-25738041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr21:47978198-47978432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 15
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr21:48638142-48637848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr21:26974-27277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 281
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr21:10756842-10757143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr21:4035389-4035090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr21:31435958-31436250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
187, 15
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr21:31948493-31948795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr21:31950344-31950646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-320
               

               
Cow position:
               
chr21:19702125-19702440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 15
               

               
Conread position:
               
2-324
               

               
Cow position:
               
chr21:7038262-7037945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-324
               

               
Cow position:
               
chr21:18574445-18574762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-325
               

               
Cow position:
               
chr21:33245558-33245243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr21:22100269-22099916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr21:3782701-3783056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr21:32191780-32192126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 69
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr21:47140092-47139736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-364
               

               
Cow position:
               
chr21:25598595-25598958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr21:11292637-11293004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr21:21909956-21910321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr21:33770608-33770973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr21:19614175-19614540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr21:19626779-19626412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr21:40479192-40479562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr21:750339-750716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr21:33993465-33993086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr21:21624015-21624399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr21:23900205-23899822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 14
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr21:34900606-34900990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr21:2709959-2709566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr21:4998884-4998493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:5857535-5857137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:7525048-7525447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:11509867-11510266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:16575516-16575117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:20370296-20370695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:23672353-23672745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:27147623-27147222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:30571149-30570750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr21:41795793-41795394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr21:27036379-27036779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr21:5595264-5595655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 184
               

               
Conread position:
               
2-405
               

               
Cow position:
               
chr21:34301506-34301921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
2-406
               

               
Cow position:
               
chr21:25382599-25383016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 15
               

               
Conread position:
               
2-406
               

               
Cow position:
               
chr21:39401195-39401596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
2-408
               

               
Cow position:
               
chr21:5641907-5641500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 15
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr21:451805-452213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr21:36376933-36377357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr21:44122656-44123064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:48074-48485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:1179335-1178927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:2514775-2515177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 13
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:4473417-4473011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
233, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:7597340-7596924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:10436771-10437179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:11143919-11143512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:13735231-13734819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:16794941-16795350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:17539335-17539744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:21103649-21104059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:23329412-23329002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 200
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:26628698-26629107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:26633076-26632654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:26756792-26756386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:26854762-26854353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:26875522-26875934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:29423989-29424389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:29954821-29955230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:30134720-30135126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:30655570-30655979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:30966012-30965603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 200
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:31039751-31039342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:34074568-34074977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:34181596-34182000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:34909793-34910201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:36781056-36781460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:36892301-36891894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:38848869-38848460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:39225017-39224608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:39429549-39429958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
279, 20
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:39486343-39485935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:41957582-41957171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr21:45842072-45841661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 15
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr21:47429271-47429685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 15
               

               
Conread position:
               
2-439
               

               
Cow position:
               
chr21:27743342-27743786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 15
               

               
Conread position:
               
2-468
               

               
Cow position:
               
chr21:7672723-7673185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr21:37517763-37517309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 14
               

               
Conread position:
               
2-477
               

               
Cow position:
               
chr21:7047256-7046780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr21:2472846-2472363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 19
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr21:2938630-2939112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr21:10075333-10074851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr21:17411906-17411429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr21:33709569-33709087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr21:33901357-33901841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 15
               

               
Conread position:
               
2-526
               

               
Cow position:
               
chr21:13632491-13633014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr21:46143323-46143503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 112
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr21:28625711-28625895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr21:30151022-30150814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr21:27146603-27146388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr21:33415189-33414956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr21:3173719-3173959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr21:1765604-1765340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr21:40013760-40013487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr21:34617984-34618291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
73, 5
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr21:36909423-36909748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 14
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:12338768-12339104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr21:30897021-30897367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr21:10777357-10777016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
3-357
               

               
Cow position:
               
chr21:14762912-14762550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 14
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr21:24082253-24081890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr21:3818713-3819090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 14
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr21:8981520-8981130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 13
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr21:5649508-5649912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 14
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr21:21967923-21968323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
3-438
               

               
Cow position:
               
chr21:21480577-21480146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 18
               

               
Conread position:
               
3-484
               

               
Cow position:
               
chr21:36225350-36225828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 14
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr21:23283230-23283043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
173, 13
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr21:4541270-4541067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr21:35573281-35573070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr21:49662818-49662600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr21:42917726-42917959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr21:36399329-36399622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
4-317
               

               
Cow position:
               
chr21:9940573-9940265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr21:8420273-8420602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr21:17219016-17218654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
4-438
               

               
Cow position:
               
chr21:20262731-20262295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 13
               

               
Conread position:
               
4-468
               

               
Cow position:
               
chr21:10514415-10514868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 13
               

               
Conread position:
               
4-468
               

               
Cow position:
               
chr21:27863917-27863451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
4-473
               

               
Cow position:
               
chr21:42558707-42559166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
360, 13
               

               
Conread position:
               
4-476
               

               
Cow position:
               
chr21:7564719-7564237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
5-175
               

               
Cow position:
               
chr21:29855278-29855447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
5-190
               

               
Cow position:
               
chr21:9363440-9363250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr21:27619586-27619377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
5-288
               

               
Cow position:
               
chr21:9981084-9980817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr21:3923846-3924138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr21:28914758-28914464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
5-398
               

               
Cow position:
               
chr21:10071325-10070939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
347, 17
               

               
Conread position:
               
5-406
               

               
Cow position:
               
chr21:17174748-17175153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
16, 147
               

               
Conread position:
               
5-418
               

               
Cow position:
               
chr21:28442340-28442759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 12
               

               
Conread position:
               
5-423
               

               
Cow position:
               
chr21:2366945-2367356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 12
               

               
Conread position:
               
5-474
               

               
Cow position:
               
chr21:43240468-43240933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 12
               

               
Conread position:
               
6-364
               

               
Cow position:
               
chr21:46132391-46132019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
6-397
               

               
Cow position:
               
chr21:25764240-25764631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr21:25799970-25800165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 10
               

               
Conread position:
               
7-208
               

               
Cow position:
               
chr21:46860761-46860560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
167, 14
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr21:18601268-18601477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
7-279
               

               
Cow position:
               
chr21:49423636-49423908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr21:45651-45929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
7-300
               

               
Cow position:
               
chr21:443638-443926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
7-476
               

               
Cow position:
               
chr21:45866544-45867004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 101
               

               
Conread position:
               
8-152
               

               
Cow position:
               
chr21:35437742-35437600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
8-159
               

               
Cow position:
               
chr21:18044173-18044023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
8-178
               

               
Cow position:
               
chr21:18828730-18828561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
8-190
               

               
Cow position:
               
chr21:28923749-28923930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr21:23658147-23658438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr21:23971229-23970941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr21:36680312-36680601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr21:40177991-40178293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
8-334
               

               
Cow position:
               
chr21:12313908-12314238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
8-367
               

               
Cow position:
               
chr21:5153224-5153580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
8-402
               

               
Cow position:
               
chr21:26829630-26829260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 179
               

               
Conread position:
               
8-406
               

               
Cow position:
               
chr21:10263647-10264034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
9-307
               

               
Cow position:
               
chr21:16230713-16231004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
9-402
               

               
Cow position:
               
chr21:4905361-4904968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 200
               

               
Conread position:
               
9-410
               

               
Cow position:
               
chr21:81681-82084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 8
               

               
Conread position:
               
10-303
               

               
Cow position:
               
chr21:41159728-41159433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
10-355
               

               
Cow position:
               
chr21:20910494-20910143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
188, 7
               

               
Conread position:
               
12-306
               

               
Cow position:
               
chr21:32814206-32813908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
56, 108
               

               
Conread position:
               
14-307
               

               
Cow position:
               
chr21:30595138-30594850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
16-418
               

               
Cow position:
               
chr21:12616757-12617154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 40
               

               
Conread position:
               
17-139
               

               
Cow position:
               
chr21:8896564-8896442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
17-150
               

               
Cow position:
               
chr21:10664055-10664188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
17-201
               

               
Cow position:
               
chr21:13303145-13303328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
17-206
               

               
Cow position:
               
chr21:46830531-46830338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 12
               

               
Conread position:
               
17-207
               

               
Cow position:
               
chr21:8451460-8451649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr21:1058414-1058616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
17-219
               

               
Cow position:
               
chr21:21076743-21076942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
17-222
               

               
Cow position:
               
chr21:44219844-44220054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
67, 198
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chr21:31276336-31276543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
113, 12
               

               
Conread position:
               
17-236
               

               
Cow position:
               
chr21:21961149-21961363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
154, 16
               

               
Conread position:
               
17-237
               

               
Cow position:
               
chr21:39672289-39672507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
17-240
               

               
Cow position:
               
chr21:39674954-39675176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 186
               

               
Conread position:
               
17-241
               

               
Cow position:
               
chr21:13718668-13718445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
17-241
               

               
Cow position:
               
chr21:31252942-31253165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
205, 184
               

               
Conread position:
               
17-306
               

               
Cow position:
               
chr21:25042104-25042391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
17-307
               

               
Cow position:
               
chr21:7815102-7814808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 6
               

               
Conread position:
               
17-307
               

               
Cow position:
               
chr21:41538812-41539103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
59, 156
               

               
Conread position:
               
17-349
               

               
Cow position:
               
chr21:11195748-11196081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 73
               

               
Conread position:
               
17-350
               

               
Cow position:
               
chr21:30904986-30904657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 169
               

               
Conread position:
               
17-354
               

               
Cow position:
               
chr21:17452400-17452066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 154
               

               
Conread position:
               
17-354
               

               
Cow position:
               
chr21:46462806-46463144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 70
               

               
Conread position:
               
17-356
               

               
Cow position:
               
chr21:24085965-24085619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 112
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr21:1780968-1781330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 129
               

               
Conread position:
               
17-385
               

               
Cow position:
               
chr21:937667-938015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 169
               

               
Conread position:
               
17-385
               

               
Cow position:
               
chr21:44566083-44565727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
187, 61
               

               
Conread position:
               
17-399
               

               
Cow position:
               
chr21:28989227-28989609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
17-399
               

               
Cow position:
               
chr21:33263466-33263844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 181
               

               
Conread position:
               
17-400
               

               
Cow position:
               
chr21:38867951-38867576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 39
               

               
Conread position:
               
17-402
               

               
Cow position:
               
chr21:17713928-17714315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
287, 185
               

               
Conread position:
               
17-402
               

               
Cow position:
               
chr21:20107135-20106758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 189
               

               
Conread position:
               
17-402
               

               
Cow position:
               
chr21:35898006-35897635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 170
               

               
Conread position:
               
17-406
               

               
Cow position:
               
chr21:15976257-15976635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 11
               

               
Conread position:
               
17-406
               

               
Cow position:
               
chr21:18494595-18494971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 73
               

               
Conread position:
               
17-410
               

               
Cow position:
               
chr21:19766470-19766861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 6
               

               
Conread position:
               
17-410
               

               
Cow position:
               
chr21:23683157-23683553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 199
               

               
Conread position:
               
17-410
               

               
Cow position:
               
chr21:47767768-47767375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 191
               

               
Conread position:
               
17-439
               

               
Cow position:
               
chr21:17414906-17414512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
347, 78
               

               
Conread position:
               
17-439
               

               
Cow position:
               
chr21:17479000-17479410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
335, 95
               

               
Conread position:
               
17-439
               

               
Cow position:
               
chr21:40244049-40244478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 191
               

               
Conread position:
               
17-450
               

               
Cow position:
               
chr21:37706802-37706371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 127
               

               
Conread position:
               
17-460
               

               
Cow position:
               
chr21:5596769-5597210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
62, 157
               

               
Conread position:
               
17-467
               

               
Cow position:
               
chr21:28477240-28477684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 185
               

               
Conread position:
               
17-468
               

               
Cow position:
               
chr21:912346-911904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 130
               

               
Conread position:
               
17-468
               

               
Cow position:
               
chr21:14760193-14760636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
17-468
               

               
Cow position:
               
chr21:28881764-28882199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 177
               

               
Conread position:
               
17-474
               

               
Cow position:
               
chr21:22719159-22718715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 46
               

               
Conread position:
               
17-474
               

               
Cow position:
               
chr21:42500651-42501112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 107
               

               
Conread position:
               
18-221
               

               
Cow position:
               
chr21:19050874-19050670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
18-231
               

               
Cow position:
               
chr21:3467886-3468101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
18-273
               

               
Cow position:
               
chr21:28908214-28907969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
180, 64
               

               
Conread position:
               
18-384
               

               
Cow position:
               
chr21:30566648-30567002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
281, 51
               

               
Conread position:
               
18-388
               

               
Cow position:
               
chr21:18932110-18932472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 27
               

               
Conread position:
               
18-409
               

               
Cow position:
               
chr21:29500523-29500916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
18-476
               

               
Cow position:
               
chr21:15584787-15584349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 163
               

               
Conread position:
               
19-207
               

               
Cow position:
               
chr21:3765820-3765635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
19-244
               

               
Cow position:
               
chr21:37924129-37924353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
20, 184
               

               
Conread position:
               
19-355
               

               
Cow position:
               
chr21:8290026-8289686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
19-385
               

               
Cow position:
               
chr21:44108638-44108988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 83
               

               
Conread position:
               
20-307
               

               
Cow position:
               
chr21:13159151-13159440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
166, 78
               

               
Conread position:
               
21-189
               

               
Cow position:
               
chr21:28910083-28909916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
21-355
               

               
Cow position:
               
chr21:37297694-37297372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
22-221
               

               
Cow position:
               
chr21:26557438-26557241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
22-298
               

               
Cow position:
               
chr21:4860542-4860268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 174
               

               
Conread position:
               
22-356
               

               
Cow position:
               
chr21:24864769-24865112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
69, 195
               

               
Conread position:
               
22-385
               

               
Cow position:
               
chr21:31158873-31159244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
23-290
               

               
Cow position:
               
chr21:12325654-12325923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 138
               

               
Conread position:
               
23-307
               

               
Cow position:
               
chr21:45971531-45971255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
23-308
               

               
Cow position:
               
chr21:33579813-33580092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
110, 67
               

               
Conread position:
               
23-433
               

               
Cow position:
               
chr21:28810634-28810231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
55, 80
               

               
Conread position:
               
23-468
               

               
Cow position:
               
chr21:16612250-16612687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 185
               

               
Conread position:
               
23-476
               

               
Cow position:
               
chr21:36163341-36162889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 73
               

               
Conread position:
               
24-298
               

               
Cow position:
               
chr21:12440571-12440850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 182
               

               
Conread position:
               
24-400
               

               
Cow position:
               
chr21:48108231-48107866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
221, 107
               

               
Conread position:
               
24-406
               

               
Cow position:
               
chr21:7582283-7581904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 188
               

               
Conread position:
               
25-370
               

               
Cow position:
               
chr21:22345409-22345760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr21:30626559-30626205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 27
               

               
Conread position:
               
25-410
               

               
Cow position:
               
chr21:4898027-4897643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
277, 35
               

               
Conread position:
               
25-466
               

               
Cow position:
               
chr21:29069703-29069267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 40
               

               
Conread position:
               
25-484
               

               
Cow position:
               
chr21:25480212-25480677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 177
               

               
Conread position:
               
26-307
               

               
Cow position:
               
chr21:1990924-1991207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 214
               

               
Conread position:
               
26-399
               

               
Cow position:
               
chr21:9743955-9743579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 176
               

               
Conread position:
               
27-307
               

               
Cow position:
               
chr21:27500420-27500698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
27-308
               

               
Cow position:
               
chr21:31836253-31835976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 125
               

               
Conread position:
               
27-397
               

               
Cow position:
               
chr21:16789346-16789721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 166
               

               
Conread position:
               
27-412
               

               
Cow position:
               
chr21:13070239-13069850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
27-467
               

               
Cow position:
               
chr21:30232074-30231633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 61
               

               
Conread position:
               
28-412
               

               
Cow position:
               
chr21:17475445-17475831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
29-217
               

               
Cow position:
               
chr21:33154951-33155137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr21:14125689-14125890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
81, 180
               

               
Conread position:
               
29-282
               

               
Cow position:
               
chr21:3635103-3634847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
111, 185
               

               
Conread position:
               
29-356
               

               
Cow position:
               
chr21:17262485-17262165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
29-398
               

               
Cow position:
               
chr21:4794848-4795220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 180
               

               
Conread position:
               
29-400
               

               
Cow position:
               
chr21:45916077-45915714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
334, 173
               

               
Conread position:
               
29-406
               

               
Cow position:
               
chr21:13395178-13395554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
30-385
               

               
Cow position:
               
chr21:21964659-21965001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
334, 78
               

               
Conread position:
               
30-406
               

               
Cow position:
               
chr21:32574352-32574725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 254
               

               
Conread position:
               
30-410
               

               
Cow position:
               
chr21:30688561-30688183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 172
               

               
Conread position:
               
31-399
               

               
Cow position:
               
chr21:28429078-28429438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 154
               

               
Conread position:
               
31-409
               

               
Cow position:
               
chr21:10151437-10151800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 114
               

               
Conread position:
               
32-484
               

               
Cow position:
               
chr21:24236743-24237190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 170
               

               
Conread position:
               
33-356
               

               
Cow position:
               
chr21:25193425-25193750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
9, 174
               

               
Conread position:
               
33-433
               

               
Cow position:
               
chr21:35061701-35062116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
161, 42
               

               
Conread position:
               
33-445
               

               
Cow position:
               
chr21:9415874-9416292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 117
               

               
Conread position:
               
33-468
               

               
Cow position:
               
chr21:19363819-19363397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
288, 175
               

               
Conread position:
               
33-533
               

               
Cow position:
               
chr21:47168321-47167821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-307
               

               
Cow position:
               
chr21:19668757-19668492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
247, 54
               

               
Conread position:
               
34-421
               

               
Cow position:
               
chr21:23984651-23984261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 43
               

               
Conread position:
               
34-440
               

               
Cow position:
               
chr21:45474123-45473715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
155, 137
               

               
Conread position:
               
35-209
               

               
Cow position:
               
chr21:8071142-8070974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
35-353
               

               
Cow position:
               
chr21:6956537-6956218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 115
               

               
Conread position:
               
35-355
               

               
Cow position:
               
chr21:10960190-10959862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
35-356
               

               
Cow position:
               
chr21:24136551-24136873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 167
               

               
Conread position:
               
35-379
               

               
Cow position:
               
chr21:17370250-17369904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
267, 173
               

               
Conread position:
               
35-406
               

               
Cow position:
               
chr21:45151998-45151617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
35-409
               

               
Cow position:
               
chr21:40267195-40266826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 165
               

               
Conread position:
               
36-400
               

               
Cow position:
               
chr21:4569864-4569495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 166
               

               
Conread position:
               
36-410
               

               
Cow position:
               
chr21:33235432-33235808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 166
               

               
Conread position:
               
37-307
               

               
Cow position:
               
chr21:220595-220869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
37-370
               

               
Cow position:
               
chr21:46777338-46777006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 171
               

               
Conread position:
               
37-399
               

               
Cow position:
               
chr21:21963113-21963478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
244, 165
               

               
Conread position:
               
37-410
               

               
Cow position:
               
chr21:38651286-38650916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 168
               

               
Conread position:
               
38-221
               

               
Cow position:
               
chr21:42136208-42136034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
38-356
               

               
Cow position:
               
chr21:16909691-16910013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 208
               

               
Conread position:
               
41-228
               

               
Cow position:
               
chr21:14238193-14238378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
41-240
               

               
Cow position:
               
chr21:11024351-11024154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
41-279
               

               
Cow position:
               
chr21:10642240-10642472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
41-384
               

               
Cow position:
               
chr21:5790864-5791210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
261, 161
               

               
Conread position:
               
41-399
               

               
Cow position:
               
chr21:30990627-30990275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 31
               

               
Conread position:
               
41-467
               

               
Cow position:
               
chr21:23586502-23586943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 113
               

               
Conread position:
               
41-484
               

               
Cow position:
               
chr21:36973175-36972731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 159
               

               
Conread position:
               
42-447
               

               
Cow position:
               
chr21:4399440-4399847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 155
               

               
Conread position:
               
43-406
               

               
Cow position:
               
chr21:42190517-42190173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 105
               

               
Conread position:
               
44-354
               

               
Cow position:
               
chr21:44804624-44804309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
52, 148
               

               
Conread position:
               
45-220
               

               
Cow position:
               
chr21:44074096-44074261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
45-271
               

               
Cow position:
               
chr21:2984148-2983923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
184, 153
               

               
Conread position:
               
45-399
               

               
Cow position:
               
chr21:37479602-37479954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 140
               

               
Conread position:
               
45-405
               

               
Cow position:
               
chr21:23821813-23822168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 11
               

               
Conread position:
               
46-371
               

               
Cow position:
               
chr21:41032925-41033247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 165
               

               
Conread position:
               
47-373
               

               
Cow position:
               
chr21:20162180-20162507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 155
               

               
Conread position:
               
47-399
               

               
Cow position:
               
chr21:4665839-4665486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
243, 155
               

               
Conread position:
               
47-405
               

               
Cow position:
               
chr21:5344313-5344659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 22
               

               
Conread position:
               
47-410
               

               
Cow position:
               
chr21:26071507-26071142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
262, 155
               

               
Conread position:
               
49-236
               

               
Cow position:
               
chr21:17439231-17439051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
52-399
               

               
Cow position:
               
chr21:7067672-7068048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
52-412
               

               
Cow position:
               
chr21:11759805-11759454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 20
               

               
Conread position:
               
54-364
               

               
Cow position:
               
chr21:28029050-28029360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 28
               

               
Conread position:
               
54-468
               

               
Cow position:
               
chr21:5137855-5137425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
135, 399
               

               
Conread position:
               
56-356
               

               
Cow position:
               
chr21:32829248-32828943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
56-484
               

               
Cow position:
               
chr21:34955854-34956278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
221, 30
               

               
Conread position:
               
58-469
               

               
Cow position:
               
chr21:641243-641650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 62
               

               
Conread position:
               
60-227
               

               
Cow position:
               
chr21:41281246-41281080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 149
               

               
Conread position:
               
60-303
               

               
Cow position:
               
chr21:22349801-22350046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
182, 97
               

               
Conread position:
               
60-332
               

               
Cow position:
               
chr21:40530644-40530379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 8
               

               
Conread position:
               
60-398
               

               
Cow position:
               
chr21:17616658-17616326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
232, 131
               

               
Conread position:
               
60-399
               

               
Cow position:
               
chr21:13930795-13931137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
253, 143
               

               
Conread position:
               
60-484
               

               
Cow position:
               
chr21:3364447-3364872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
242, 142
               

               
Conread position:
               
63-384
               

               
Cow position:
               
chr21:27065467-27065149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
218, 147
               

               
Conread position:
               
63-405
               

               
Cow position:
               
chr21:43402329-43401988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
229, 108
               

               
Conread position:
               
65-476
               

               
Cow position:
               
chr21:13048533-13048123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 117
               

               
Conread position:
               
66-260
               

               
Cow position:
               
chr21:45250615-45250421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
137, 167
               

               
Conread position:
               
66-384
               

               
Cow position:
               
chr21:39061512-39061833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
72, 146
               

               
Conread position:
               
66-474
               

               
Cow position:
               
chr21:42905706-42905303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
69-366
               

               
Cow position:
               
chr21:35899478-35899772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 76
               

               
Conread position:
               
69-406
               

               
Cow position:
               
chr21:42384173-42384512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
69-474
               

               
Cow position:
               
chr21:19196501-19196096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
70-468
               

               
Cow position:
               
chr21:8985217-8985614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 137
               

               
Conread position:
               
71-379
               

               
Cow position:
               
chr21:35823220-35822916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 37
               

               
Conread position:
               
72-356
               

               
Cow position:
               
chr21:20045098-20044822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
25, 115
               

               
Conread position:
               
72-410
               

               
Cow position:
               
chr21:24857981-24858318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 136
               

               
Conread position:
               
73-406
               

               
Cow position:
               
chr21:20160355-20160680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
74-384
               

               
Cow position:
               
chr21:13954184-13954498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 15
               

               
Conread position:
               
74-468
               

               
Cow position:
               
chr21:38120775-38121163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 244
               

               
Conread position:
               
75-247
               

               
Cow position:
               
chr21:42487209-42487380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
167, 136
               

               
Conread position:
               
75-307
               

               
Cow position:
               
chr21:10624199-10623969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
75-343
               

               
Cow position:
               
chr21:703494-703223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
35, 134
               

               
Conread position:
               
75-356
               

               
Cow position:
               
chr21:426467-426745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 14
               

               
Conread position:
               
75-399
               

               
Cow position:
               
chr21:395551-395865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 132
               

               
Conread position:
               
75-399
               

               
Cow position:
               
chr21:7132788-7132466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
223, 50
               

               
Conread position:
               
75-406
               

               
Cow position:
               
chr21:13718187-13717855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
116, 94
               

               
Conread position:
               
75-406
               

               
Cow position:
               
chr21:17419865-17419540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
234, 30
               

               
Conread position:
               
75-410
               

               
Cow position:
               
chr21:15905495-15905830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
215, 133
               

               
Conread position:
               
76-279
               

               
Cow position:
               
chr21:18155687-18155888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
76-356
               

               
Cow position:
               
chr21:1815286-1815010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
166, 50
               

               
Conread position:
               
76-385
               

               
Cow position:
               
chr21:39664697-39664405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
76-406
               

               
Cow position:
               
chr21:17709502-17709830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
233, 126
               

               
Conread position:
               
77-307
               

               
Cow position:
               
chr21:13533609-13533840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
145, 134
               

               
Conread position:
               
78-354
               

               
Cow position:
               
chr21:47760453-47760729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 130
               

               
Conread position:
               
78-410
               

               
Cow position:
               
chr21:42170306-42170641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
78-449
               

               
Cow position:
               
chr21:11645309-11644919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 258
               

               
Conread position:
               
83-410
               

               
Cow position:
               
chr21:46263858-46264176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 101
               

               
Conread position:
               
88-221
               

               
Cow position:
               
chr21:34586728-34586596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
88-355
               

               
Cow position:
               
chr21:39883754-39884012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
88-468
               

               
Cow position:
               
chr21:42414413-42414036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 98
               

               
Conread position:
               
89-247
               

               
Cow position:
               
chr21:18800929-18800761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
89-278
               

               
Cow position:
               
chr21:15531054-15531237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 110
               

               
Conread position:
               
89-292
               

               
Cow position:
               
chr21:26097723-26097523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
89-341
               

               
Cow position:
               
chr21:40265520-40265769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
89-400
               

               
Cow position:
               
chr21:25536681-25536995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 96
               

               
Conread position:
               
89-406
               

               
Cow position:
               
chr21:34010701-34010395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
5, 81
               

               
Conread position:
               
89-408
               

               
Cow position:
               
chr21:6833739-6834054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 119
               

               
Conread position:
               
89-410
               

               
Cow position:
               
chr21:19614864-19615179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
192, 65
               

               
Conread position:
               
89-468
               

               
Cow position:
               
chr21:41974692-41974312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 119
               

               
Conread position:
               
90-478
               

               
Cow position:
               
chr21:18850538-18850152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
109, 217
               

               
Conread position:
               
91-205
               

               
Cow position:
               
chr21:8910350-8910236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-207
               

               
Cow position:
               
chr21:2663514-2663400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
91-209
               

               
Cow position:
               
chr21:8617926-8618045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
91-221
               

               
Cow position:
               
chr21:14742939-14743067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
91-229
               

               
Cow position:
               
chr21:45373796-45373932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
91-307
               

               
Cow position:
               
chr21:32395992-32395779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
91-331
               

               
Cow position:
               
chr21:37122364-37122129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
190, 115
               

               
Conread position:
               
91-364
               

               
Cow position:
               
chr21:17282392-17282664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 120
               

               
Conread position:
               
91-399
               

               
Cow position:
               
chr21:19501714-19502025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
222, 111
               

               
Conread position:
               
91-399
               

               
Cow position:
               
chr21:35068051-35068362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
191, 111
               

               
Conread position:
               
91-401
               

               
Cow position:
               
chr21:13763314-13763618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
273, 112
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr21:661918-661597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
222, 95
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr21:28993937-28993616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
207, 120
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr21:45372044-45372365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
190, 111
               

               
Conread position:
               
91-433
               

               
Cow position:
               
chr21:2786103-2785745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
110, 160
               

               
Conread position:
               
91-484
               

               
Cow position:
               
chr21:25076698-25076305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
218, 7
               

               
Conread position:
               
92-307
               

               
Cow position:
               
chr21:10032047-10032260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
92-398
               

               
Cow position:
               
chr21:31702266-31701961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 116
               

               
Conread position:
               
92-399
               

               
Cow position:
               
chr21:36642597-36642902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 107
               

               
Conread position:
               
92-433
               

               
Cow position:
               
chr21:46849429-46849095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 85
               

               
Conread position:
               
92-468
               

               
Cow position:
               
chr21:11740442-11740057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
93-405
               

               
Cow position:
               
chr21:18718360-18718674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
206, 93
               

               
Conread position:
               
93-421
               

               
Cow position:
               
chr21:24764958-24765310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
78, 154
               

               
Conread position:
               
95-221
               

               
Cow position:
               
chr21:17196815-17196692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
95-308
               

               
Cow position:
               
chr21:8219545-8219759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
95-391
               

               
Cow position:
               
chr21:24887690-24887998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
82, 62
               

               
Conread position:
               
96-356
               

               
Cow position:
               
chr21:3987792-3987530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
213, 106
               

               
Conread position:
               
96-410
               

               
Cow position:
               
chr21:40786365-40786683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 62
               

               
Conread position:
               
96-477
               

               
Cow position:
               
chr21:11228260-11227890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
269, 104
               

               
Conread position:
               
97-221
               

               
Cow position:
               
chr21:14452521-14452643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
97-365
               

               
Cow position:
               
chr21:39561292-39561563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
212, 105
               

               
Conread position:
               
98-350
               

               
Cow position:
               
chr21:47745976-47745725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
183, 14
               

               
Conread position:
               
99-302
               

               
Cow position:
               
chr21:36762746-36762950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
99-355
               

               
Cow position:
               
chr21:31278479-31278729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
99-357
               

               
Cow position:
               
chr21:18712983-18713236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
99-410
               

               
Cow position:
               
chr21:13168847-13169160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
210, 103
               

               
Conread position:
               
100-304
               

               
Cow position:
               
chr21:5009479-5009274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
181, 102
               

               
Conread position:
               
100-307
               

               
Cow position:
               
chr21:19439162-19439366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
100-355
               

               
Cow position:
               
chr21:12973553-12973302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
101-441
               

               
Cow position:
               
chr21:23785727-23786070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
121, 138
               

               
Conread position:
               
102-267
               

               
Cow position:
               
chr21:43317582-43317414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
102-331
               

               
Cow position:
               
chr21:34511542-34511317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
6, 11
               

               
Conread position:
               
102-405
               

               
Cow position:
               
chr21:11707050-11706744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 84
               

               
Conread position:
               
102-409
               

               
Cow position:
               
chr21:13128396-13128093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
55, 45
               

               
Conread position:
               
103-410
               

               
Cow position:
               
chr21:19170209-19169901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
174, 83
               

               
Conread position:
               
104-298
               

               
Cow position:
               
chr21:27406502-27406317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
104-484
               

               
Cow position:
               
chr21:4092686-4093065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
198, 82
               

               
Conread position:
               
105-293
               

               
Cow position:
               
chr21:29225356-29225173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
105-468
               

               
Cow position:
               
chr21:47802559-47802197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 262
               

               
Conread position:
               
106-446
               

               
Cow position:
               
chr21:28734209-28733869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
108-406
               

               
Cow position:
               
chr21:18783976-18783683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
108-468
               

               
Cow position:
               
chr21:44755071-44754716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
129, 87
               

               
Conread position:
               
108-474
               

               
Cow position:
               
chr21:13489349-13489714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
201, 100
               

               
Conread position:
               
109-406
               

               
Cow position:
               
chr21:32237007-32237297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 88
               

               
Conread position:
               
109-410
               

               
Cow position:
               
chr21:25173576-25173880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
12, 94
               

               
Conread position:
               
109-421
               

               
Cow position:
               
chr21:10726988-10727297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
250, 105
               

               
Conread position:
               
112-306
               

               
Cow position:
               
chr21:5459686-5459494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
112-307
               

               
Cow position:
               
chr21:5808711-5808518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
112-354
               

               
Cow position:
               
chr21:697275-697038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
112-356
               

               
Cow position:
               
chr21:3614071-3614307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
188, 49
               

               
Conread position:
               
112-400
               

               
Cow position:
               
chr21:2491080-2490789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
201, 90
               

               
Conread position:
               
112-410
               

               
Cow position:
               
chr21:2359602-2359896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
239, 90
               

               
Conread position:
               
112-410
               

               
Cow position:
               
chr21:25127320-25127607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
243, 73
               

               
Conread position:
               
112-418
               

               
Cow position:
               
chr21:40058515-40058822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
113-410
               

               
Cow position:
               
chr21:36297190-36297495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
175, 98
               

               
Conread position:
               
114-306
               

               
Cow position:
               
chr21:876132-876321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
120, 43
               

               
Conread position:
               
114-349
               

               
Cow position:
               
chr21:44931692-44931921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
114-410
               

               
Cow position:
               
chr21:28998195-28997895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
184, 91
               

               
Conread position:
               
114-468
               

               
Cow position:
               
chr21:2679271-2679619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
193, 72
               

               
Conread position:
               
115-467
               

               
Cow position:
               
chr21:43357548-43357193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 122
               

               
Conread position:
               
116-307
               

               
Cow position:
               
chr21:20377648-20377463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
116-351
               

               
Cow position:
               
chr21:18568935-18568702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
116-484
               

               
Cow position:
               
chr21:8888580-8888937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
210, 86
               

               
Conread position:
               
117-410
               

               
Cow position:
               
chr21:1457906-1457611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
192, 85
               

               
Conread position:
               
117-468
               

               
Cow position:
               
chr21:12961198-12960836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
96, 246
               

               
Conread position:
               
118-359
               

               
Cow position:
               
chr21:21600944-21600701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
183, 90
               

               
Conread position:
               
119-307
               

               
Cow position:
               
chr21:17205000-17204812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
119-400
               

               
Cow position:
               
chr21:23478998-23478721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
177, 9
               

               
Conread position:
               
120-384
               

               
Cow position:
               
chr21:4957472-4957205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
182, 82
               

               
Conread position:
               
120-440
               

               
Cow position:
               
chr21:39889026-39888710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 91
               

               
Conread position:
               
120-468
               

               
Cow position:
               
chr21:30607385-30607025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
74, 221
               

               
Conread position:
               
121-378
               

               
Cow position:
               
chr21:1529509-1529257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
152, 80
               

               
Conread position:
               
121-399
               

               
Cow position:
               
chr21:33632730-33632449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
181, 81
               

               
Conread position:
               
121-410
               

               
Cow position:
               
chr21:10882145-10882444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
85, 296
               

               
Conread position:
               
122-393
               

               
Cow position:
               
chr21:26648284-26648014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
214, 86
               

               
Conread position:
               
122-438
               

               
Cow position:
               
chr21:36793602-36793929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 86
               

               
Conread position:
               
123-395
               

               
Cow position:
               
chr21:33562735-33563005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
72, 102
               

               
Conread position:
               
123-400
               

               
Cow position:
               
chr21:42023856-42024118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
242, 86
               

               
Conread position:
               
123-410
               

               
Cow position:
               
chr21:39822089-39821800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
191, 79
               

               
Conread position:
               
124-343
               

               
Cow position:
               
chr21:8546495-8546269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
72, 112
               

               
Conread position:
               
124-354
               

               
Cow position:
               
chr21:39313447-39313223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
124-398
               

               
Cow position:
               
chr21:17511501-17511772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
157, 45
               

               
Conread position:
               
125-384
               

               
Cow position:
               
chr21:17643240-17642984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
167, 79
               

               
Conread position:
               
126-398
               

               
Cow position:
               
chr21:35919312-35919587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
176, 76
               

               
Conread position:
               
126-476
               

               
Cow position:
               
chr21:44114406-44114060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
127-410
               

               
Cow position:
               
chr21:27336547-27336832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
154, 75
               

               
Conread position:
               
128-307
               

               
Cow position:
               
chr21:43251851-43251674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
128-410
               

               
Cow position:
               
chr21:32356628-32356345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
185, 74
               

               
Conread position:
               
131-306
               

               
Cow position:
               
chr21:46626798-46626980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
131-320
               

               
Cow position:
               
chr21:5985028-5985214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
131-398
               

               
Cow position:
               
chr21:41040594-41040866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
174, 237
               

               
Conread position:
               
131-405
               

               
Cow position:
               
chr21:10966962-10967235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
234, 80
               

               
Conread position:
               
131-410
               

               
Cow position:
               
chr21:5482480-5482762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
186, 70
               

               
Conread position:
               
131-410
               

               
Cow position:
               
chr21:25282058-25281790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
131-468
               

               
Cow position:
               
chr21:36795329-36795665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 184
               

               
Conread position:
               
131-477
               

               
Cow position:
               
chr21:41155591-41155936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
173, 77
               

               
Conread position:
               
132-354
               

               
Cow position:
               
chr21:5418580-5418811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 134
               

               
Conread position:
               
132-384
               

               
Cow position:
               
chr21:36857359-36857607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
132-468
               

               
Cow position:
               
chr21:16188065-16187745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
227, 35
               

               
Conread position:
               
134-354
               

               
Cow position:
               
chr21:1641980-1641766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
196, 51
               

               
Conread position:
               
134-355
               

               
Cow position:
               
chr21:16166901-16166682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
183, 73
               

               
Conread position:
               
137-354
               

               
Cow position:
               
chr21:26241563-26241775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 43
               

               
Conread position:
               
137-356
               

               
Cow position:
               
chr21:14464300-14464531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
138-385
               

               
Cow position:
               
chr21:33350481-33350727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
163, 47
               

               
Conread position:
               
138-415
               

               
Cow position:
               
chr21:15867051-15867319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
227, 48
               

               
Conread position:
               
139-355
               

               
Cow position:
               
chr21:36819486-36819262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 149
               

               
Conread position:
               
140-399
               

               
Cow position:
               
chr21:44252090-44251840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
211, 168
               

               
Conread position:
               
140-477
               

               
Cow position:
               
chr21:3585618-3585297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
219, 61
               

               
Conread position:
               
141-364
               

               
Cow position:
               
chr21:28907910-28907688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
141-410
               

               
Cow position:
               
chr21:13035310-13035039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
102, 67
               

               
Conread position:
               
142-391
               

               
Cow position:
               
chr21:21223024-21223280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
56, 95
               

               
Conread position:
               
143-385
               

               
Cow position:
               
chr21:5971095-5970857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
133, 65
               

               
Conread position:
               
146-356
               

               
Cow position:
               
chr21:34011360-34011144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
146-468
               

               
Cow position:
               
chr21:6713794-6713463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
119, 55
               

               
Conread position:
               
148-369
               

               
Cow position:
               
chr21:23150273-23150056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
203, 63
               

               
Conread position:
               
149-439
               

               
Cow position:
               
chr21:39403791-39403497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
160, 62
               

               
Conread position:
               
151-400
               

               
Cow position:
               
chr21:27569415-27569169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 86
               

               
Conread position:
               
153-406
               

               
Cow position:
               
chr21:5636970-5636716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
149, 58
               

               
Conread position:
               
154-400
               

               
Cow position:
               
chr21:17049344-17049586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
210, 78
               

               
Conread position:
               
154-409
               

               
Cow position:
               
chr21:19070837-19070578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
67, 57
               

               
Conread position:
               
154-440
               

               
Cow position:
               
chr21:23322329-23322039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
155, 47
               

               
Conread position:
               
154-473
               

               
Cow position:
               
chr21:4267598-4267277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 53
               

               
Conread position:
               
157-367
               

               
Cow position:
               
chr21:13256550-13256768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
157-406
               

               
Cow position:
               
chr21:49700281-49700032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
198, 54
               

               
Conread position:
               
158-356
               

               
Cow position:
               
chr21:28919867-28919670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
158-410
               

               
Cow position:
               
chr21:13410067-13409819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
140, 53
               

               
Conread position:
               
160-340
               

               
Cow position:
               
chr21:29015131-29014960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
178, 26
               

               
Conread position:
               
165-410
               

               
Cow position:
               
chr21:11114468-11114715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
46, 21
               

               
Conread position:
               
166-410
               

               
Cow position:
               
chr21:40899100-40899346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
143, 45
               

               
Conread position:
               
167-326
               

               
Cow position:
               
chr21:30257939-30257778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
131, 40
               

               
Conread position:
               
167-406
               

               
Cow position:
               
chr21:15445314-15445071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
167-468
               

               
Cow position:
               
chr21:41878241-41878533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
187, 44
               

               
Conread position:
               
171-406
               

               
Cow position:
               
chr21:27124359-27124124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 40
               

               
Conread position:
               
171-408
               

               
Cow position:
               
chr21:42348909-42348670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
129, 40
               

               
Conread position:
               
172-440
               

               
Cow position:
               
chr21:9278138-9278419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
29, 268
               

               
Conread position:
               
173-406
               

               
Cow position:
               
chr21:8351530-8351305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
127, 28
               

               
Conread position:
               
176-355
               

               
Cow position:
               
chr21:11877158-11877334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
122, 35
               

               
Conread position:
               
177-439
               

               
Cow position:
               
chr21:33494-33760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
178, 150
               

               
Conread position:
               
180-393
               

               
Cow position:
               
chr21:24797473-24797676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
184, 21
               

               
Conread position:
               
180-408
               

               
Cow position:
               
chr21:48251252-48251023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
125, 30
               

               
Conread position:
               
180-466
               

               
Cow position:
               
chr21:28626019-28626301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
181-477
               

               
Cow position:
               
chr21:17936147-17936443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
111, 225
               

               
Conread position:
               
182-408
               

               
Cow position:
               
chr21:13316162-13316388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
186-367
               

               
Cow position:
               
chr21:37282093-37282272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
165, 26
               

               
Conread position:
               
186-398
               

               
Cow position:
               
chr21:30592514-30592310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
169, 25
               

               
Conread position:
               
186-410
               

               
Cow position:
               
chr21:19083820-19083590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
186-445
               

               
Cow position:
               
chr21:31662244-31662509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
112, 15
               

               
Conread position:
               
187-355
               

               
Cow position:
               
chr21:24714432-24714603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 59
               

               
Conread position:
               
189-410
               

               
Cow position:
               
chr21:13303606-13303824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
166, 22
               

               
Conread position:
               
189-418
               

               
Cow position:
               
chr21:23535500-23535729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
190-439
               

               
Cow position:
               
chr21:39450383-39450125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 6
               

               
Conread position:
               
191-421
               

               
Cow position:
               
chr21:41597600-41597841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
195-382
               

               
Cow position:
               
chr21:9334471-9334282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
195-398
               

               
Cow position:
               
chr21:7709953-7710159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 131
               

               
Conread position:
               
195-399
               

               
Cow position:
               
chr21:18781633-18781843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
114, 16
               

               
Conread position:
               
197-406
               

               
Cow position:
               
chr21:3818009-3818212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
152, 96
               

               
Conread position:
               
197-440
               

               
Cow position:
               
chr21:33791576-33791327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
197-450
               

               
Cow position:
               
chr21:41579544-41579800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr21:3498293-3498559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
150, 14
               

               
Conread position:
               
197-476
               

               
Cow position:
               
chr21:41620912-41621195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
101, 172
               

               
Conread position:
               
198-355
               

               
Cow position:
               
chr21:29248050-29247899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
198-385
               

               
Cow position:
               
chr21:13585264-13585088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
159, 34
               

               
Conread position:
               
198-406
               

               
Cow position:
               
chr21:1058869-1059080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
198-406
               

               
Cow position:
               
chr21:24094950-24094746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
157, 85
               

               
Conread position:
               
198-406
               

               
Cow position:
               
chr21:37361680-37361474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 116
               

               
Conread position:
               
198-406
               

               
Cow position:
               
chr21:40133949-40134162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
55, 174
               

               
Conread position:
               
198-421
               

               
Cow position:
               
chr21:8618068-8618297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
198-446
               

               
Cow position:
               
chr21:2927409-2927155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
107, 48
               

               
Conread position:
               
198-468
               

               
Cow position:
               
chr21:17674442-17674163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
158, 70
               

               
Conread position:
               
198-468
               

               
Cow position:
               
chr21:29484778-29485044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
166, 41
               

               
Conread position:
               
199-399
               

               
Cow position:
               
chr21:34159755-34159958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
199-399
               

               
Cow position:
               
chr21:34739644-34739837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
199-400
               

               
Cow position:
               
chr21:18828514-18828311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
199-400
               

               
Cow position:
               
chr21:29002367-29002162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
93, 156
               

               
Conread position:
               
199-406
               

               
Cow position:
               
chr21:34835628-34835432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
167, 51
               

               
Conread position:
               
199-423
               

               
Cow position:
               
chr21:35996968-35997196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
199-433
               

               
Cow position:
               
chr21:5425776-5426005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
158, 40
               

               
Conread position:
               
199-468
               

               
Cow position:
               
chr21:12801949-12801687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
167, 34
               

               
Conread position:
               
200-409
               

               
Cow position:
               
chr21:13850274-13850061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 7
               

               
Conread position:
               
200-418
               

               
Cow position:
               
chr21:45355632-45355852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
156, 164
               

               
Conread position:
               
200-474
               

               
Cow position:
               
chr21:8549477-8549750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
201-364
               

               
Cow position:
               
chr21:47215384-47215222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 98
               

               
Conread position:
               
201-406
               

               
Cow position:
               
chr21:3381284-3381081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 42
               

               
Conread position:
               
201-468
               

               
Cow position:
               
chr21:47465325-47465056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
202-367
               

               
Cow position:
               
chr21:16270530-16270694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
160, 149
               

               
Conread position:
               
202-409
               

               
Cow position:
               
chr21:27521527-27521326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
140, 31
               

               
Conread position:
               
203-399
               

               
Cow position:
               
chr21:19258625-19258825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
203-421
               

               
Cow position:
               
chr21:28443580-28443356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
203-466
               

               
Cow position:
               
chr21:47067088-47066837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
203-474
               

               
Cow position:
               
chr21:9310842-9311114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
204-439
               

               
Cow position:
               
chr21:42145716-42145950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
32, 163
               

               
Conread position:
               
204-476
               

               
Cow position:
               
chr21:31676298-31676569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
147, 82
               

               
Conread position:
               
205-470
               

               
Cow position:
               
chr21:22860803-22861066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
154, 34
               

               
Conread position:
               
206-293
               

               
Cow position:
               
chr21:9359508-9359595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
206-387
               

               
Cow position:
               
chr21:35897289-35897465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
151, 7
               

               
Conread position:
               
207-396
               

               
Cow position:
               
chr21:6051309-6051499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
207-399
               

               
Cow position:
               
chr21:45330805-45330606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
207-399
               

               
Cow position:
               
chr21:46242436-46242242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
207-446
               

               
Cow position:
               
chr21:30150466-30150221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 174
               

               
Conread position:
               
208-449
               

               
Cow position:
               
chr21:42135820-42135573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
90, 147
               

               
Conread position:
               
208-468
               

               
Cow position:
               
chr21:21077133-21077388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
209-375
               

               
Cow position:
               
chr21:42465634-42465804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
96, 159
               

               
Conread position:
               
209-399
               

               
Cow position:
               
chr21:9998916-9998722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
209-465
               

               
Cow position:
               
chr21:23568013-23568284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
210-410
               

               
Cow position:
               
chr21:31277627-31277825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
131, 51
               

               
Conread position:
               
210-421
               

               
Cow position:
               
chr21:31253341-31253564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
211-356
               

               
Cow position:
               
chr21:3047493-3047635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
211-400
               

               
Cow position:
               
chr21:10118360-10118555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
211-402
               

               
Cow position:
               
chr21:13163700-13163889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
211-406
               

               
Cow position:
               
chr21:3763930-3763737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
211-406
               

               
Cow position:
               
chr21:29979950-29979755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
9, 98
               

               
Conread position:
               
211-468
               

               
Cow position:
               
chr21:38449645-38449383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
87, 117
               

               
Conread position:
               
212-406
               

               
Cow position:
               
chr21:17193952-17193751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
212-406
               

               
Cow position:
               
chr21:47860996-47861200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
212-467
               

               
Cow position:
               
chr21:45850902-45850648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
188, 27
               

               
Conread position:
               
212-468
               

               
Cow position:
               
chr21:10601560-10601313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 27
               

               
Conread position:
               
213-388
               

               
Cow position:
               
chr21:32559545-32559375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
150, 74
               

               
Conread position:
               
213-400
               

               
Cow position:
               
chr21:5426755-5426937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
213-405
               

               
Cow position:
               
chr21:40065506-40065313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chr21:17302567-17302354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 51
               

               
Conread position:
               
214-468
               

               
Cow position:
               
chr21:13365151-13365405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 97
               

               
Conread position:
               
215-406
               

               
Cow position:
               
chr21:47764301-47764113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chr21:40589671-40589454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
82, 139
               

               
Conread position:
               
217-405
               

               
Cow position:
               
chr21:4268686-4268877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
217-410
               

               
Cow position:
               
chr21:28027616-28027813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
219-438
               

               
Cow position:
               
chr21:18842423-18842201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 136
               

               
Conread position:
               
220-468
               

               
Cow position:
               
chr21:15610971-15611207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
221-372
               

               
Cow position:
               
chr21:1510890-1511037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
221-468
               

               
Cow position:
               
chr21:28190845-28191096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
77, 134
               

               
Conread position:
               
222-400
               

               
Cow position:
               
chr21:15911218-15911396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
137, 82
               

               
Conread position:
               
222-408
               

               
Cow position:
               
chr21:46829451-46829266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
223-376
               

               
Cow position:
               
chr21:802475-802323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 74
               

               
Conread position:
               
224-400
               

               
Cow position:
               
chr21:17183741-17183919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
226-405
               

               
Cow position:
               
chr21:27146172-27145988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
227-400
               

               
Cow position:
               
chr21:18790733-18790563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
137, 78
               

               
Conread position:
               
229-447
               

               
Cow position:
               
chr21:32339912-32339694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
135, 68
               

               
Conread position:
               
229-476
               

               
Cow position:
               
chr21:41198586-41198329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
80, 180
               

               
Conread position:
               
233-439
               

               
Cow position:
               
chr21:9872796-9872996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
171, 52
               

               
Conread position:
               
238-443
               

               
Cow position:
               
chr21:10000914-10001117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
244-468
               

               
Cow position:
               
chr21:28244315-28244533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
164, 64
               

               
Conread position:
               
258-466
               

               
Cow position:
               
chr21:18041989-18041787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
259-434
               

               
Cow position:
               
chr21:957521-957705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 123
               
Show alignments to all cow chromosomes.