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Cow genome map

           
Conread name:
           
Ss1.1-unkn-MI-P-NA-afr-a-10-1-UM.s1.3
        

               
Conread position:
               
1-163
               

               
Cow position:
               
chr29:18879133-18878972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr29:40300432-40300259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr29:3501927-3502114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr29:984398-984586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr29:10296972-10296785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr29:9137834-9138028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
151, 9
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr29:29303366-29303170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr29:37600359-37600160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr29:17154016-17154215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr29:4001953-4002149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr29:8136718-8136509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 16
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr29:7398790-7398579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr29:11309178-11308972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr29:14050678-14050474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr29:18012133-18012339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr29:29770951-29770746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
171, 16
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr29:3539722-3539513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
84, 198
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr29:7724437-7724646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr29:15756939-15757148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr29:16187223-16187422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr29:29701441-29701239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr29:44379092-44378885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr29:95044-94829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr29:2984391-2984597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr29:38933096-38932882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr29:30545475-30545263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
92, 66
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr29:34774328-34774114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr29:16012205-16011995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr29:35738969-35738752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr29:42709240-42709023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr29:8667348-8667564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr29:45462999-45463224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr29:4519502-4519734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr29:20244825-20245053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr29:7799347-7799584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr29:19891330-19891564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr29:36428750-36428513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr29:17227944-17228209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr29:6871506-6871211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
152, 20
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr29:11433479-11433775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
198, 181
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr29:10154802-10155070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:5187248-5186971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 16
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr29:23240050-23240330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr29:13127570-13127279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr29:9332680-9332975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 15
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr29:13017855-13017559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr29:457511-457213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr29:6935251-6935549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr29:10674550-10674848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr29:629171-629466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
217, 16
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:7427373-7427072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:8623468-8623170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:14116580-14116880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:15576523-15576220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:17117467-17117779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
191, 16
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:25423372-25423662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:35076898-35077196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:39332047-39331742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:40498112-40497809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr29:43692493-43692795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr29:4537595-4537906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr29:28100123-28100419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr29:4084602-4084909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr29:7397671-7397354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr29:7972696-7972375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr29:9717187-9717499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr29:34806068-34805762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
250, 190
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr29:44009283-44008966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr29:2136570-2136244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr29:10819947-10819616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr29:43729605-43729946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
280, 16
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr29:31786222-31786557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr29:4220921-4221263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr29:30106092-30105740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr29:36193140-36192785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr29:13041024-13040668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr29:32870766-32871126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr29:7959995-7959630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr29:8588969-8588619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 16
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr29:10225496-10225153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr29:12901566-12901224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 102
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr29:29065962-29066311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr29:36109788-36109453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr29:133719-134083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr29:23988328-23988698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:528754-528399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 16
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:3584589-3584234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 16
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:5550536-5550891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 16
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:16501419-16501771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 207
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:20254931-20255287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 16
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:32942768-32943123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 16
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr29:43327563-43327914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 16
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr29:7666495-7666143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 83
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr29:10452040-10451668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr29:13590175-13589815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 16
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr29:19514571-19514213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 16
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr29:10154257-10153895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr29:19619501-19619137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 16
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr29:34551987-34552352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 21
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr29:36242871-36243242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 147
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr29:35434405-35434778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 16
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr29:23154760-23155161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr29:406728-406345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 16
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr29:32808135-32808510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 16
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr29:45583267-45582898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr29:18749047-18748665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 184
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr29:34535696-34535307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
78, 118
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr29:43495602-43495970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 152
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr29:43499932-43499553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr29:4875370-4874974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr29:22949134-22948738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr29:32732869-32733240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr29:17557-17181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr29:686656-686262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 16
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr29:26263389-26263772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr29:9079036-9078643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr29:649798-650209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr29:9638777-9638387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
365, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr29:17132084-17131683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 20
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr29:19761810-19762206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr29:37719441-37719841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr29:38229768-38230168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 16
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr29:40764134-40763743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
308, 16
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr29:4201654-4202053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 16
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr29:15944107-15944504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 16
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr29:19338495-19338918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr29:25927019-25926618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 16
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr29:39567223-39567618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 41
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr29:40117089-40117500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 16
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr29:43958-43551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr29:2694469-2694874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 16
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr29:13616119-13615701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 13
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr29:28696626-28696228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr29:34793802-34793395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:2188813-2188411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:5238253-5238660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:5241163-5241570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:7956430-7956049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:9911691-9912109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:11696069-11696467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:13107875-13108271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 15
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:22935822-22936207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:24345930-24345513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:26130329-26130720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:32290138-32290545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 16
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr29:40096500-40096900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 16
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr29:16347979-16348384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
298, 15
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr29:6261779-6261382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 85
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr29:38349593-38349188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:1934025-1933614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:4327031-4327432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:7811430-7811021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:13101677-13102077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
280, 15
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:16067120-16067529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 16
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:25775512-25775099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr29:26161062-26160654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 16
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr29:45208265-45208677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 16
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr29:19792731-19792318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 16
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr29:21443811-21443386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr29:36586112-36586533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr29:2589374-2588930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr29:13553676-13554102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr29:18963268-18963697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chr29:2415272-2414840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 20
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr29:28775922-28775486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr29:1956555-1956110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr29:45650794-45650359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 59
               

               
Conread position:
               
1-466
               

               
Cow position:
               
chr29:26778424-26778877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 186
               

               
Conread position:
               
1-466
               

               
Cow position:
               
chr29:36530399-36530861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 16
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr29:32800167-32799709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 15
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr29:36216656-36217111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 16
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr29:41812039-41811591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
409, 16
               

               
Conread position:
               
1-469
               

               
Cow position:
               
chr29:4120388-4120851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 16
               

               
Conread position:
               
1-472
               

               
Cow position:
               
chr29:6775450-6774987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 16
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr29:87477-87007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 20
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr29:2744735-2744263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
358, 15
               

               
Conread position:
               
2-147
               

               
Cow position:
               
chr29:13058471-13058621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
2-151
               

               
Cow position:
               
chr29:43371917-43371769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-159
               

               
Cow position:
               
chr29:21199487-21199331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-160
               

               
Cow position:
               
chr29:5062693-5062850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-163
               

               
Cow position:
               
chr29:31594533-31594373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr29:5233139-5233303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr29:33599569-33599397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr29:15698688-15698509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-199
               

               
Cow position:
               
chr29:4164574-4164770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr29:21168048-21168245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
192, 15
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr29:16042438-16042643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
190, 15
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr29:7848160-7848365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr29:2623978-2623770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr29:29565571-29565355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr29:1743268-1743485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr29:3574830-3574611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr29:16185899-16185678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-239
               

               
Cow position:
               
chr29:13923847-13924081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr29:527068-526833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr29:9641690-9641925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr29:13585973-13586208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr29:16065478-16065713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr29:16152346-16152580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr29:18752002-18752237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr29:32378340-32378575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr29:39214081-39213846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr29:40157513-40157748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr29:10819129-10818876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 159
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr29:28656605-28656340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr29:36209464-36209732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr29:12875934-12876211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
2-285
               

               
Cow position:
               
chr29:6774302-6774022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 15
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr29:37617691-37617970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 15
               

               
Conread position:
               
2-303
               

               
Cow position:
               
chr29:19857226-19857529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:1688503-1688805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:10031884-10031582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:10145708-10145406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:15755398-15755096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:15936726-15936425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:19925217-19924915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:22341281-22341583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:28578909-28579211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 15
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:30708012-30707710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:31765808-31766111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:39075667-39075365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr29:45762659-45762361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chr29:15570303-15570607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr29:45627098-45627414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
2-324
               

               
Cow position:
               
chr29:11703559-11703876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr29:24121321-24120994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr29:2103610-2103949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 15
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr29:18364872-18364518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
178, 15
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr29:5935728-5936080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 15
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr29:2308815-2309164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr29:2402455-2402809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 15
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr29:4891066-4890706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
2-357
               

               
Cow position:
               
chr29:23980496-23980852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 15
               

               
Conread position:
               
2-364
               

               
Cow position:
               
chr29:26987100-26987464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr29:6455414-6455779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr29:10122568-10122204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr29:24013270-24013635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr29:39047869-39048234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr29:38247216-38246845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
80, 212
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr29:32516262-32516632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr29:292256-292634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chr29:3973009-3972642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 14
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr29:13623605-13623221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr29:19524372-19523988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr29:35735851-35735467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr29:18300254-18300653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr29:21209702-21210101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr29:24659564-24659167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
243, 15
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr29:606879-606479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr29:19755983-19756378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr29:20014519-20014119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr29:42807749-42808139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr29:756867-756461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:727498-727904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:1479220-1479628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:1911875-1911466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:2521115-2521527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:5426085-5425680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:6414050-6414459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:6879166-6878756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:7953598-7954007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:11118943-11118534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:11696984-11697393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:12898327-12898736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:13128381-13127970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 13
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:14569065-14569474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:14611014-14611423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:15401220-15400813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:16035629-16035218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 19
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:16382391-16382798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 14
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:16785446-16785855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:18011340-18011749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:20055180-20055589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:20213330-20213738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 14
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:20593500-20593908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:21231313-21230902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:21933597-21933174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:24728532-24728122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:24982802-24982394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:26633755-26633346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:27702846-27703240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:27928128-27927719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:31185144-31185552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:32298493-32298902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:32317631-32318035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:32329491-32329082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:32353364-32353772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:34865356-34865765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:35264599-35264191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:36007930-36008339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:38261722-38261311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:38271776-38272186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:38409965-38410374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 15
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr29:38672324-38671914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 15
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr29:12005229-12004820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
2-418
               

               
Cow position:
               
chr29:465863-465446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 15
               

               
Conread position:
               
2-419
               

               
Cow position:
               
chr29:4611130-4611546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 14
               

               
Conread position:
               
2-433
               

               
Cow position:
               
chr29:13639817-13639404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
2-450
               

               
Cow position:
               
chr29:31093793-31093350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 15
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chr29:34780216-34779764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
2-468
               

               
Cow position:
               
chr29:45006080-45005631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 15
               

               
Conread position:
               
2-473
               

               
Cow position:
               
chr29:735002-734540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 15
               

               
Conread position:
               
2-481
               

               
Cow position:
               
chr29:15767857-15767378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:2401123-2401605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:3330351-3330833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:4620713-4621196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:15116759-15116279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:15251618-15252100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:16185010-16184528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:18561261-18560781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:21227744-21228226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:21475217-21475699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:32292360-32292842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 15
               

               
Conread position:
               
2-484
               

               
Cow position:
               
chr29:32555978-32555499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 15
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr29:2367271-2367064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr29:3549301-3549516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr29:8681413-8681172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr29:7866023-7865678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
297, 10
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr29:22339689-22339328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr29:22656362-22655990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr29:21665512-21665868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr29:2837521-2837138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 14
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr29:38910472-38910084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 212
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chr29:32644446-32644850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
3-405
               

               
Cow position:
               
chr29:961461-961860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 13
               

               
Conread position:
               
3-406
               

               
Cow position:
               
chr29:16097775-16097379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
296, 13
               

               
Conread position:
               
3-406
               

               
Cow position:
               
chr29:40338001-40337592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
3-410
               

               
Cow position:
               
chr29:15965784-15965376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 14
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr29:1021809-1022236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
177, 10
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr29:26334848-26334447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
150, 12
               

               
Conread position:
               
3-417
               

               
Cow position:
               
chr29:1613039-1612627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
81, 14
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr29:19428204-19428632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
4-184
               

               
Cow position:
               
chr29:2145369-2145190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr29:24730738-24730544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr29:14372742-14372485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr29:43009574-43009311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr29:31943383-31943660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
4-406
               

               
Cow position:
               
chr29:1324976-1325377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr29:20429425-20429028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 24
               

               
Conread position:
               
4-439
               

               
Cow position:
               
chr29:10156748-10156329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
360, 13
               

               
Conread position:
               
4-440
               

               
Cow position:
               
chr29:32963074-32963530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr29:35112537-35112339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chr29:12674681-12675030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 81
               

               
Conread position:
               
5-395
               

               
Cow position:
               
chr29:10652873-10653269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
5-397
               

               
Cow position:
               
chr29:26289546-26289159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
5-409
               

               
Cow position:
               
chr29:17077777-17078185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 12
               

               
Conread position:
               
5-433
               

               
Cow position:
               
chr29:18072467-18072901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
6-202
               

               
Cow position:
               
chr29:13848395-13848200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
188, 17
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr29:37618707-37619002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
7-274
               

               
Cow position:
               
chr29:8296071-8296338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
99, 10
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr29:30069032-30069240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr29:5952426-5952210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
185, 9
               

               
Conread position:
               
8-245
               

               
Cow position:
               
chr29:12577213-12577453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
8-246
               

               
Cow position:
               
chr29:13093667-13093908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
8-246
               

               
Cow position:
               
chr29:19547346-19547112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
8-246
               

               
Cow position:
               
chr29:33549598-33549358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
8-279
               

               
Cow position:
               
chr29:7664226-7663943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
8-303
               

               
Cow position:
               
chr29:18104517-18104223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr29:9511438-9511136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
8-364
               

               
Cow position:
               
chr29:18085117-18085487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 9
               

               
Conread position:
               
8-371
               

               
Cow position:
               
chr29:11136345-11135989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 9
               

               
Conread position:
               
8-405
               

               
Cow position:
               
chr29:11684543-11684943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
8-468
               

               
Cow position:
               
chr29:732168-732617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 9
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr29:36299472-36299700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
9-410
               

               
Cow position:
               
chr29:44233397-44233010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 8
               

               
Conread position:
               
10-355
               

               
Cow position:
               
chr29:10841718-10841360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
17-151
               

               
Cow position:
               
chr29:14207757-14207624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
17-178
               

               
Cow position:
               
chr29:6648816-6648976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
17-190
               

               
Cow position:
               
chr29:43517173-43517000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 69
               

               
Conread position:
               
17-209
               

               
Cow position:
               
chr29:868344-868542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 118
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr29:2544076-2544270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
17-218
               

               
Cow position:
               
chr29:27858359-27858568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
17-248
               

               
Cow position:
               
chr29:16168486-16168256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
206, 95
               

               
Conread position:
               
17-262
               

               
Cow position:
               
chr29:27694156-27693918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
139, 61
               

               
Conread position:
               
17-265
               

               
Cow position:
               
chr29:18528187-18527937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr29:33520438-33520155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
17-307
               

               
Cow position:
               
chr29:9463159-9462870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 104
               

               
Conread position:
               
17-307
               

               
Cow position:
               
chr29:29302481-29302189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
65, 187
               

               
Conread position:
               
17-308
               

               
Cow position:
               
chr29:38215097-38214809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
17-340
               

               
Cow position:
               
chr29:6771530-6771864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
60, 140
               

               
Conread position:
               
17-341
               

               
Cow position:
               
chr29:20594604-20594909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
17-341
               

               
Cow position:
               
chr29:22121926-22122254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
59, 123
               

               
Conread position:
               
17-350
               

               
Cow position:
               
chr29:19596706-19596371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
61, 203
               

               
Conread position:
               
17-358
               

               
Cow position:
               
chr29:20710544-20710900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
58, 209
               

               
Conread position:
               
17-367
               

               
Cow position:
               
chr29:16612408-16612053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
67, 188
               

               
Conread position:
               
17-384
               

               
Cow position:
               
chr29:9861317-9860949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 67
               

               
Conread position:
               
17-395
               

               
Cow position:
               
chr29:40014147-40013773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
292, 50
               

               
Conread position:
               
17-396
               

               
Cow position:
               
chr29:36633284-36632914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 182
               

               
Conread position:
               
17-406
               

               
Cow position:
               
chr29:34746104-34745724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 193
               

               
Conread position:
               
17-406
               

               
Cow position:
               
chr29:42771228-42771586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
17-409
               

               
Cow position:
               
chr29:16109908-16110302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 191
               

               
Conread position:
               
17-410
               

               
Cow position:
               
chr29:5948247-5947852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 193
               

               
Conread position:
               
17-410
               

               
Cow position:
               
chr29:11321798-11321409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
93, 164
               

               
Conread position:
               
17-410
               

               
Cow position:
               
chr29:16609290-16609682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 157
               

               
Conread position:
               
17-421
               

               
Cow position:
               
chr29:27007670-27008071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
17-438
               

               
Cow position:
               
chr29:6218010-6217576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
17-442
               

               
Cow position:
               
chr29:6925568-6925987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 195
               

               
Conread position:
               
17-474
               

               
Cow position:
               
chr29:44902152-44901702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 182
               

               
Conread position:
               
17-476
               

               
Cow position:
               
chr29:15738795-15738336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 192
               

               
Conread position:
               
17-476
               

               
Cow position:
               
chr29:27833539-27833993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 49
               

               
Conread position:
               
18-211
               

               
Cow position:
               
chr29:20903868-20903676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 154
               

               
Conread position:
               
18-273
               

               
Cow position:
               
chr29:39108893-39108638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
64, 38
               

               
Conread position:
               
18-350
               

               
Cow position:
               
chr29:28621721-28621395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 87
               

               
Conread position:
               
18-353
               

               
Cow position:
               
chr29:4103638-4103302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 188
               

               
Conread position:
               
18-355
               

               
Cow position:
               
chr29:16057270-16056913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
41, 241
               

               
Conread position:
               
18-387
               

               
Cow position:
               
chr29:12309550-12309912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
338, 96
               

               
Conread position:
               
18-406
               

               
Cow position:
               
chr29:17408883-17409272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 185
               

               
Conread position:
               
18-418
               

               
Cow position:
               
chr29:11365798-11366188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 187
               

               
Conread position:
               
18-438
               

               
Cow position:
               
chr29:29056729-29057151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 5
               

               
Conread position:
               
19-189
               

               
Cow position:
               
chr29:12222126-12221956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-209
               

               
Cow position:
               
chr29:25837167-25836979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 168
               

               
Conread position:
               
19-307
               

               
Cow position:
               
chr29:15808527-15808814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 184
               

               
Conread position:
               
19-312
               

               
Cow position:
               
chr29:15289282-15289583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
55, 93
               

               
Conread position:
               
19-416
               

               
Cow position:
               
chr29:5786480-5786876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 181
               

               
Conread position:
               
20-300
               

               
Cow position:
               
chr29:27588245-27588516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
20-355
               

               
Cow position:
               
chr29:12956773-12956424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
66, 261
               

               
Conread position:
               
21-275
               

               
Cow position:
               
chr29:28506648-28506890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
21-399
               

               
Cow position:
               
chr29:24952235-24952618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 93
               

               
Conread position:
               
21-416
               

               
Cow position:
               
chr29:42821340-42821738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 144
               

               
Conread position:
               
21-429
               

               
Cow position:
               
chr29:29477473-29477071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
342, 15
               

               
Conread position:
               
22-205
               

               
Cow position:
               
chr29:26415564-26415752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
22-354
               

               
Cow position:
               
chr29:12570994-12571326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 12
               

               
Conread position:
               
22-473
               

               
Cow position:
               
chr29:9977506-9977055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 180
               

               
Conread position:
               
23-205
               

               
Cow position:
               
chr29:6333103-6333285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
23-205
               

               
Cow position:
               
chr29:6334342-6334524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
23-308
               

               
Cow position:
               
chr29:16939559-16939846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 73
               

               
Conread position:
               
23-364
               

               
Cow position:
               
chr29:27835777-27836113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
187, 72
               

               
Conread position:
               
23-429
               

               
Cow position:
               
chr29:15941088-15940671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 133
               

               
Conread position:
               
23-476
               

               
Cow position:
               
chr29:20933262-20933716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 73
               

               
Conread position:
               
24-178
               

               
Cow position:
               
chr29:2263507-2263356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
24-307
               

               
Cow position:
               
chr29:45820684-45820416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
24-400
               

               
Cow position:
               
chr29:23119816-23119445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 15
               

               
Conread position:
               
25-198
               

               
Cow position:
               
chr29:11915092-11915265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
25-207
               

               
Cow position:
               
chr29:23112919-23113100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
25-330
               

               
Cow position:
               
chr29:21592261-21592560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 184
               

               
Conread position:
               
25-468
               

               
Cow position:
               
chr29:35291656-35292088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 175
               

               
Conread position:
               
25-474
               

               
Cow position:
               
chr29:21197093-21196649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 179
               

               
Conread position:
               
26-240
               

               
Cow position:
               
chr29:23449042-23448830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
26-303
               

               
Cow position:
               
chr29:9864297-9864583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 223
               

               
Conread position:
               
26-320
               

               
Cow position:
               
chr29:8427044-8426763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
27-406
               

               
Cow position:
               
chr29:26979962-26980336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
252, 110
               

               
Conread position:
               
29-203
               

               
Cow position:
               
chr29:5109718-5109544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
29-217
               

               
Cow position:
               
chr29:21428021-21427835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
29-217
               

               
Cow position:
               
chr29:34298186-34298003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
29-307
               

               
Cow position:
               
chr29:7560839-7560563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
29-320
               

               
Cow position:
               
chr29:17794982-17795271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
29-350
               

               
Cow position:
               
chr29:27005447-27005763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
29-356
               

               
Cow position:
               
chr29:26223889-26224230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
53, 291
               

               
Conread position:
               
29-399
               

               
Cow position:
               
chr29:8190917-8190534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
222, 173
               

               
Conread position:
               
29-440
               

               
Cow position:
               
chr29:25088296-25088723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 352
               

               
Conread position:
               
29-475
               

               
Cow position:
               
chr29:4524422-4524859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
117, 142
               

               
Conread position:
               
30-160
               

               
Cow position:
               
chr29:6286804-6286674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
30-307
               

               
Cow position:
               
chr29:16209585-16209311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
30-307
               

               
Cow position:
               
chr29:34390126-34389845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
42, 120
               

               
Conread position:
               
30-399
               

               
Cow position:
               
chr29:17606979-17607351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 178
               

               
Conread position:
               
30-410
               

               
Cow position:
               
chr29:2483680-2483297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 173
               

               
Conread position:
               
31-211
               

               
Cow position:
               
chr29:18521486-18521301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
31-355
               

               
Cow position:
               
chr29:11798719-11799049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
58, 174
               

               
Conread position:
               
31-393
               

               
Cow position:
               
chr29:24623807-24624174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 64
               

               
Conread position:
               
31-410
               

               
Cow position:
               
chr29:24616197-24616578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 171
               

               
Conread position:
               
31-475
               

               
Cow position:
               
chr29:4480610-4480165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 207
               

               
Conread position:
               
34-190
               

               
Cow position:
               
chr29:29929364-29929520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-402
               

               
Cow position:
               
chr29:21528872-21529219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 54
               

               
Conread position:
               
35-219
               

               
Cow position:
               
chr29:19659623-19659805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
35-307
               

               
Cow position:
               
chr29:903500-903770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
35-318
               

               
Cow position:
               
chr29:8110287-8110014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
35-358
               

               
Cow position:
               
chr29:19398751-19399076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
246, 173
               

               
Conread position:
               
35-385
               

               
Cow position:
               
chr29:32308754-32308406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 34
               

               
Conread position:
               
35-410
               

               
Cow position:
               
chr29:18724188-18723811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 74
               

               
Conread position:
               
36-207
               

               
Cow position:
               
chr29:41183170-41182999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-338
               

               
Cow position:
               
chr29:13876619-13876321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
290, 166
               

               
Conread position:
               
36-405
               

               
Cow position:
               
chr29:32543919-32544291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 166
               

               
Conread position:
               
36-410
               

               
Cow position:
               
chr29:8935054-8935430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 167
               

               
Conread position:
               
36-482
               

               
Cow position:
               
chr29:42253942-42253497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 166
               

               
Conread position:
               
36-484
               

               
Cow position:
               
chr29:26450062-26449609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 166
               

               
Conread position:
               
37-273
               

               
Cow position:
               
chr29:27872978-27873212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
54, 168
               

               
Conread position:
               
37-419
               

               
Cow position:
               
chr29:17109542-17109920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 128
               

               
Conread position:
               
38-320
               

               
Cow position:
               
chr29:10846585-10846318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
38-384
               

               
Cow position:
               
chr29:28990516-28990859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 170
               

               
Conread position:
               
41-236
               

               
Cow position:
               
chr29:29543932-29544123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
41-240
               

               
Cow position:
               
chr29:13903466-13903269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
41-406
               

               
Cow position:
               
chr29:6635678-6636036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 170
               

               
Conread position:
               
41-410
               

               
Cow position:
               
chr29:12189563-12189195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
240, 160
               

               
Conread position:
               
41-468
               

               
Cow position:
               
chr29:35281077-35281494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 167
               

               
Conread position:
               
41-476
               

               
Cow position:
               
chr29:35406211-35405785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 128
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr29:40306425-40306241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
42-298
               

               
Cow position:
               
chr29:31345954-31345698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 149
               

               
Conread position:
               
42-410
               

               
Cow position:
               
chr29:35455394-35455024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 160
               

               
Conread position:
               
43-209
               

               
Cow position:
               
chr29:40852488-40852649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
43-399
               

               
Cow position:
               
chr29:43081036-43080685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 163
               

               
Conread position:
               
43-406
               

               
Cow position:
               
chr29:26017934-26017565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 70
               

               
Conread position:
               
44-399
               

               
Cow position:
               
chr29:2484872-2485230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 158
               

               
Conread position:
               
45-225
               

               
Cow position:
               
chr29:26915757-26915935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
45-318
               

               
Cow position:
               
chr29:24260258-24259988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
45-409
               

               
Cow position:
               
chr29:3460399-3460763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
236, 163
               

               
Conread position:
               
45-410
               

               
Cow position:
               
chr29:2463131-2462774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
236, 166
               

               
Conread position:
               
45-416
               

               
Cow position:
               
chr29:28689188-28689565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 155
               

               
Conread position:
               
45-484
               

               
Cow position:
               
chr29:4649142-4648696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
257, 157
               

               
Conread position:
               
46-410
               

               
Cow position:
               
chr29:42413746-42414112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
263, 156
               

               
Conread position:
               
47-226
               

               
Cow position:
               
chr29:37485971-37486148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
47-400
               

               
Cow position:
               
chr29:17041231-17041581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
230, 9
               

               
Conread position:
               
47-439
               

               
Cow position:
               
chr29:26335801-26335404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
48-406
               

               
Cow position:
               
chr29:26994846-26995199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
316, 154
               

               
Conread position:
               
49-410
               

               
Cow position:
               
chr29:20626169-20626516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 76
               

               
Conread position:
               
52-476
               

               
Cow position:
               
chr29:35459173-35458767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
352, 44
               

               
Conread position:
               
52-484
               

               
Cow position:
               
chr29:25824533-25824965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
138, 133
               

               
Conread position:
               
54-399
               

               
Cow position:
               
chr29:17543036-17543381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
54-410
               

               
Cow position:
               
chr29:12610916-12611274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 148
               

               
Conread position:
               
55-365
               

               
Cow position:
               
chr29:7750291-7749978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
55-484
               

               
Cow position:
               
chr29:5138821-5139256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
247, 147
               

               
Conread position:
               
56-468
               

               
Cow position:
               
chr29:8126005-8125592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 152
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr29:24420552-24420229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 152
               

               
Conread position:
               
59-421
               

               
Cow position:
               
chr29:29550914-29551271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
60-246
               

               
Cow position:
               
chr29:18773011-18772826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr29:37268138-37267879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
183, 138
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr29:32582092-32581747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
131, 125
               

               
Conread position:
               
61-410
               

               
Cow position:
               
chr29:23763509-23763158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
241, 141
               

               
Conread position:
               
62-240
               

               
Cow position:
               
chr29:13853660-13853836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
62-306
               

               
Cow position:
               
chr29:40621334-40621094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
84, 7
               

               
Conread position:
               
63-384
               

               
Cow position:
               
chr29:28637463-28637147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
229, 26
               

               
Conread position:
               
63-405
               

               
Cow position:
               
chr29:10643299-10642954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
64-406
               

               
Cow position:
               
chr29:28883677-28884021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 144
               

               
Conread position:
               
66-402
               

               
Cow position:
               
chr29:20674209-20673866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
67-385
               

               
Cow position:
               
chr29:15828624-15828305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 143
               

               
Conread position:
               
69-358
               

               
Cow position:
               
chr29:10267535-10267248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
231, 139
               

               
Conread position:
               
69-397
               

               
Cow position:
               
chr29:35502044-35501723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
71-368
               

               
Cow position:
               
chr29:40894546-40894833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
72-355
               

               
Cow position:
               
chr29:29632332-29632047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 136
               

               
Conread position:
               
72-397
               

               
Cow position:
               
chr29:29589309-29588983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr29:40618130-40617883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
75-476
               

               
Cow position:
               
chr29:3704590-3704194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
76-288
               

               
Cow position:
               
chr29:23703233-23703024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
76-307
               

               
Cow position:
               
chr29:40330381-40330610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
77-361
               

               
Cow position:
               
chr29:38858842-38859126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
177, 34
               

               
Conread position:
               
78-311
               

               
Cow position:
               
chr29:28665412-28665642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
87, 109
               

               
Conread position:
               
78-471
               

               
Cow position:
               
chr29:1307252-1306859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 63
               

               
Conread position:
               
79-384
               

               
Cow position:
               
chr29:14888733-14889040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 129
               

               
Conread position:
               
85-240
               

               
Cow position:
               
chr29:6194371-6194218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
86-355
               

               
Cow position:
               
chr29:2715756-2716022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
121, 232
               

               
Conread position:
               
88-223
               

               
Cow position:
               
chr29:14500695-14500827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
88-308
               

               
Cow position:
               
chr29:33128426-33128637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
88-356
               

               
Cow position:
               
chr29:26346258-26346529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
122, 42
               

               
Conread position:
               
89-230
               

               
Cow position:
               
chr29:11563182-11563042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
89-363
               

               
Cow position:
               
chr29:30433303-30433577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
199, 72
               

               
Conread position:
               
89-410
               

               
Cow position:
               
chr29:2534290-2534613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
213, 113
               

               
Conread position:
               
89-453
               

               
Cow position:
               
chr29:19124982-19125329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
277, 119
               

               
Conread position:
               
89-456
               

               
Cow position:
               
chr29:26290959-26290595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
215, 97
               

               
Conread position:
               
91-240
               

               
Cow position:
               
chr29:32349685-32349538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
91-272
               

               
Cow position:
               
chr29:32212821-32212637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr29:20308094-20308301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
91-306
               

               
Cow position:
               
chr29:2374379-2374167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
91-320
               

               
Cow position:
               
chr29:8968744-8968969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
91-324
               

               
Cow position:
               
chr29:10200546-10200775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
91-399
               

               
Cow position:
               
chr29:34293545-34293234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
104, 95
               

               
Conread position:
               
91-400
               

               
Cow position:
               
chr29:43328262-43328571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
155, 48
               

               
Conread position:
               
91-405
               

               
Cow position:
               
chr29:25695689-25695375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
210, 111
               

               
Conread position:
               
91-406
               

               
Cow position:
               
chr29:31926667-31926352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 111
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr29:3282321-3282636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
273, 117
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr29:15855416-15855734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
230, 111
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr29:19386044-19386365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
218, 111
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr29:24304198-24304519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
201, 111
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr29:24305094-24304774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
190, 111
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr29:35075599-35075278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
184, 111
               

               
Conread position:
               
91-439
               

               
Cow position:
               
chr29:28197384-28197035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
218, 116
               

               
Conread position:
               
91-465
               

               
Cow position:
               
chr29:26616112-26615727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 271
               

               
Conread position:
               
91-474
               

               
Cow position:
               
chr29:18212352-18211992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
91-476
               

               
Cow position:
               
chr29:26771050-26771442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
76, 165
               

               
Conread position:
               
92-409
               

               
Cow position:
               
chr29:28868256-28868576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 108
               

               
Conread position:
               
92-410
               

               
Cow position:
               
chr29:35484870-35485188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
229, 51
               

               
Conread position:
               
92-410
               

               
Cow position:
               
chr29:40656313-40656638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 322
               

               
Conread position:
               
92-474
               

               
Cow position:
               
chr29:856778-856406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
273, 116
               

               
Conread position:
               
95-406
               

               
Cow position:
               
chr29:28195891-28195576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
96-484
               

               
Cow position:
               
chr29:21237089-21237477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
213, 58
               

               
Conread position:
               
97-383
               

               
Cow position:
               
chr29:7041203-7040922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
201, 64
               

               
Conread position:
               
98-279
               

               
Cow position:
               
chr29:11334865-11334686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
98-320
               

               
Cow position:
               
chr29:34530068-34530291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
98-405
               

               
Cow position:
               
chr29:20462986-20462684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
229, 110
               

               
Conread position:
               
99-261
               

               
Cow position:
               
chr29:28503725-28503884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
99-398
               

               
Cow position:
               
chr29:38581601-38581905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 109
               

               
Conread position:
               
100-359
               

               
Cow position:
               
chr29:11636841-11636583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
198, 92
               

               
Conread position:
               
101-364
               

               
Cow position:
               
chr29:6014726-6014996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 179
               

               
Conread position:
               
102-240
               

               
Cow position:
               
chr29:561467-561603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
102-355
               

               
Cow position:
               
chr29:24945350-24945095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
200, 100
               

               
Conread position:
               
102-356
               

               
Cow position:
               
chr29:13403299-13403555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
102-356
               

               
Cow position:
               
chr29:23541628-23541371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
103-410
               

               
Cow position:
               
chr29:16694060-16694358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
258, 69
               

               
Conread position:
               
105-409
               

               
Cow position:
               
chr29:26519821-26519521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
252, 44
               

               
Conread position:
               
105-410
               

               
Cow position:
               
chr29:16175633-16175331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 103
               

               
Conread position:
               
105-481
               

               
Cow position:
               
chr29:21619806-21619429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
197, 97
               

               
Conread position:
               
106-240
               

               
Cow position:
               
chr29:15257855-15257987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
107-395
               

               
Cow position:
               
chr29:29974685-29974969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
202, 13
               

               
Conread position:
               
108-399
               

               
Cow position:
               
chr29:45624619-45624331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
173, 49
               

               
Conread position:
               
108-405
               

               
Cow position:
               
chr29:37785545-37785233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
109-353
               

               
Cow position:
               
chr29:296185-295934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 179
               

               
Conread position:
               
109-363
               

               
Cow position:
               
chr29:18781508-18781759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
200, 99
               

               
Conread position:
               
109-406
               

               
Cow position:
               
chr29:23874099-23874394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
112-307
               

               
Cow position:
               
chr29:5636606-5636795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
112-406
               

               
Cow position:
               
chr29:12798577-12798856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
245, 89
               

               
Conread position:
               
112-428
               

               
Cow position:
               
chr29:2481687-2481378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
84, 125
               

               
Conread position:
               
113-440
               

               
Cow position:
               
chr29:19508593-19508927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 41
               

               
Conread position:
               
114-357
               

               
Cow position:
               
chr29:16302650-16302418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 94
               

               
Conread position:
               
114-395
               

               
Cow position:
               
chr29:30028784-30028498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
205, 94
               

               
Conread position:
               
114-406
               

               
Cow position:
               
chr29:6293817-6293537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 72
               

               
Conread position:
               
115-410
               

               
Cow position:
               
chr29:39425133-39425430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
194, 87
               

               
Conread position:
               
119-356
               

               
Cow position:
               
chr29:5977469-5977231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
186, 92
               

               
Conread position:
               
119-384
               

               
Cow position:
               
chr29:37470922-37470649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
119-397
               

               
Cow position:
               
chr29:40903067-40902794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 93
               

               
Conread position:
               
119-410
               

               
Cow position:
               
chr29:18338893-18338601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
179, 67
               

               
Conread position:
               
120-297
               

               
Cow position:
               
chr29:26415754-26415929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
120-297
               

               
Cow position:
               
chr29:27825900-27826073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
121-400
               

               
Cow position:
               
chr29:42848884-42849154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
234, 64
               

               
Conread position:
               
121-410
               

               
Cow position:
               
chr29:25958046-25957755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
181, 81
               

               
Conread position:
               
122-400
               

               
Cow position:
               
chr29:40583452-40583724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
122-484
               

               
Cow position:
               
chr29:21640068-21639706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
176, 80
               

               
Conread position:
               
123-433
               

               
Cow position:
               
chr29:9686353-9686035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 180
               

               
Conread position:
               
124-384
               

               
Cow position:
               
chr29:5897072-5896809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
205, 83
               

               
Conread position:
               
124-384
               

               
Cow position:
               
chr29:35300385-35300648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
157, 78
               

               
Conread position:
               
125-295
               

               
Cow position:
               
chr29:41347209-41347373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
126-399
               

               
Cow position:
               
chr29:37292432-37292709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 17
               

               
Conread position:
               
126-410
               

               
Cow position:
               
chr29:17773600-17773886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 60
               

               
Conread position:
               
126-410
               

               
Cow position:
               
chr29:35630754-35630470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
127-410
               

               
Cow position:
               
chr29:9709359-9709635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 84
               

               
Conread position:
               
128-348
               

               
Cow position:
               
chr29:1582964-1582744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
181, 45
               

               
Conread position:
               
130-468
               

               
Cow position:
               
chr29:10058864-10058539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
234, 77
               

               
Conread position:
               
131-376
               

               
Cow position:
               
chr29:36356518-36356754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
132-342
               

               
Cow position:
               
chr29:7930393-7930188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
206, 25
               

               
Conread position:
               
132-410
               

               
Cow position:
               
chr29:8630409-8630133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 50
               

               
Conread position:
               
132-468
               

               
Cow position:
               
chr29:40892049-40891700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
76, 292
               

               
Conread position:
               
133-405
               

               
Cow position:
               
chr29:14207355-14207081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
138-399
               

               
Cow position:
               
chr29:19907031-19907285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
175, 51
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr29:20616608-20616421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
140-376
               

               
Cow position:
               
chr29:26559844-26559620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
140-418
               

               
Cow position:
               
chr29:10838624-10838902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
224, 14
               

               
Conread position:
               
140-421
               

               
Cow position:
               
chr29:7408217-7407933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
141-385
               

               
Cow position:
               
chr29:20178456-20178209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
66, 110
               

               
Conread position:
               
141-410
               

               
Cow position:
               
chr29:13391195-13390924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
172, 66
               

               
Conread position:
               
141-466
               

               
Cow position:
               
chr29:43312121-43311798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
167, 58
               

               
Conread position:
               
141-481
               

               
Cow position:
               
chr29:28273711-28273380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
224, 28
               

               
Conread position:
               
141-484
               

               
Cow position:
               
chr29:18603873-18603529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
161, 61
               

               
Conread position:
               
143-355
               

               
Cow position:
               
chr29:14037037-14036825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
143-384
               

               
Cow position:
               
chr29:1445700-1445944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
166, 64
               

               
Conread position:
               
148-406
               

               
Cow position:
               
chr29:16657372-16657627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
154, 53
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr29:32521544-32521808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
54, 95
               

               
Conread position:
               
149-399
               

               
Cow position:
               
chr29:3368781-3368534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
76, 62
               

               
Conread position:
               
150-386
               

               
Cow position:
               
chr29:38760466-38760238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
203, 12
               

               
Conread position:
               
150-468
               

               
Cow position:
               
chr29:4328117-4328414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
214, 61
               

               
Conread position:
               
154-410
               

               
Cow position:
               
chr29:22021098-22020840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
155, 53
               

               
Conread position:
               
154-421
               

               
Cow position:
               
chr29:13372353-13372620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
155, 43
               

               
Conread position:
               
156-405
               

               
Cow position:
               
chr29:24650676-24650424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 45
               

               
Conread position:
               
157-421
               

               
Cow position:
               
chr29:10456862-10456605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
207, 55
               

               
Conread position:
               
158-405
               

               
Cow position:
               
chr29:44310337-44310090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
185, 44
               

               
Conread position:
               
158-418
               

               
Cow position:
               
chr29:4625302-4625045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 53
               

               
Conread position:
               
159-406
               

               
Cow position:
               
chr29:8164171-8163921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
80, 42
               

               
Conread position:
               
161-450
               

               
Cow position:
               
chr29:28128781-28128495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
191, 46
               

               
Conread position:
               
162-429
               

               
Cow position:
               
chr29:2644613-2644340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
51, 32
               

               
Conread position:
               
162-468
               

               
Cow position:
               
chr29:26734728-26735025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 49
               

               
Conread position:
               
170-306
               

               
Cow position:
               
chr29:45589882-45589747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
129, 41
               

               
Conread position:
               
170-410
               

               
Cow position:
               
chr29:21000345-21000583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
171-399
               

               
Cow position:
               
chr29:603606-603385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
196, 62
               

               
Conread position:
               
171-426
               

               
Cow position:
               
chr29:37961268-37961019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
201, 30
               

               
Conread position:
               
172-316
               

               
Cow position:
               
chr29:40960212-40960073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
172-387
               

               
Cow position:
               
chr29:23135187-23134969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
62, 14
               

               
Conread position:
               
174-304
               

               
Cow position:
               
chr29:29171342-29171470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
174-385
               

               
Cow position:
               
chr29:43252980-43252770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
147, 37
               

               
Conread position:
               
176-300
               

               
Cow position:
               
chr29:36329187-36329310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
177-400
               

               
Cow position:
               
chr29:6844919-6844697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
178, 34
               

               
Conread position:
               
177-468
               

               
Cow position:
               
chr29:22162547-22162253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 143
               

               
Conread position:
               
182-352
               

               
Cow position:
               
chr29:45588760-45588590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
183-476
               

               
Cow position:
               
chr29:699893-699611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
173, 28
               

               
Conread position:
               
186-384
               

               
Cow position:
               
chr29:24033515-24033717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 25
               

               
Conread position:
               
186-398
               

               
Cow position:
               
chr29:479105-479318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
112, 21
               

               
Conread position:
               
186-446
               

               
Cow position:
               
chr29:3502778-3503032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
224, 57
               

               
Conread position:
               
186-453
               

               
Cow position:
               
chr29:18878782-18878510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
167, 25
               

               
Conread position:
               
187-363
               

               
Cow position:
               
chr29:5062852-5063023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
173, 18
               

               
Conread position:
               
189-356
               

               
Cow position:
               
chr29:22720850-22721017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
189-385
               

               
Cow position:
               
chr29:14501316-14501513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
189-399
               

               
Cow position:
               
chr29:40165962-40166176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
101, 166
               

               
Conread position:
               
189-412
               

               
Cow position:
               
chr29:34360072-34359861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
170, 23
               

               
Conread position:
               
189-418
               

               
Cow position:
               
chr29:39111586-39111363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
175, 25
               

               
Conread position:
               
190-450
               

               
Cow position:
               
chr29:3395833-3396086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
170, 17
               

               
Conread position:
               
190-466
               

               
Cow position:
               
chr29:35636147-35636426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
195-476
               

               
Cow position:
               
chr29:23844545-23844842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
197-367
               

               
Cow position:
               
chr29:2263298-2263124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
197-421
               

               
Cow position:
               
chr29:4065818-4066041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
198-371
               

               
Cow position:
               
chr29:41076299-41076121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
100, 171
               

               
Conread position:
               
198-395
               

               
Cow position:
               
chr29:2522307-2522498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
159, 81
               

               
Conread position:
               
198-405
               

               
Cow position:
               
chr29:5099033-5098824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
198-421
               

               
Cow position:
               
chr29:477836-478059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
198-466
               

               
Cow position:
               
chr29:2984618-2984884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
198-468
               

               
Cow position:
               
chr29:41530581-41530846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
199-354
               

               
Cow position:
               
chr29:18694987-18695142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
199-393
               

               
Cow position:
               
chr29:16195582-16195774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
165, 109
               

               
Conread position:
               
199-399
               

               
Cow position:
               
chr29:2623750-2623546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
99, 155
               

               
Conread position:
               
199-406
               

               
Cow position:
               
chr29:94815-94617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
165, 47
               

               
Conread position:
               
199-406
               

               
Cow position:
               
chr29:5919596-5919385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
8, 173
               

               
Conread position:
               
199-406
               

               
Cow position:
               
chr29:12784226-12784019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 110
               

               
Conread position:
               
199-441
               

               
Cow position:
               
chr29:22175423-22175662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
199-468
               

               
Cow position:
               
chr29:12679886-12680152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
201-335
               

               
Cow position:
               
chr29:10296708-10296574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
201-356
               

               
Cow position:
               
chr29:21265467-21265621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
201-385
               

               
Cow position:
               
chr29:356058-356241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
156, 121
               

               
Conread position:
               
201-409
               

               
Cow position:
               
chr29:31928711-31928921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
201-448
               

               
Cow position:
               
chr29:25333721-25333484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 42
               

               
Conread position:
               
201-468
               

               
Cow position:
               
chr29:4367453-4367722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
173, 28
               

               
Conread position:
               
202-307
               

               
Cow position:
               
chr29:43516948-43516843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
202-399
               

               
Cow position:
               
chr29:4492304-4492109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 88
               

               
Conread position:
               
202-406
               

               
Cow position:
               
chr29:29769613-29769414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
157, 88
               

               
Conread position:
               
203-355
               

               
Cow position:
               
chr29:5046540-5046392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
203-474
               

               
Cow position:
               
chr29:22069013-22068738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
148, 87
               

               
Conread position:
               
204-350
               

               
Cow position:
               
chr29:30227399-30227548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
204-410
               

               
Cow position:
               
chr29:29312781-29312580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
204-476
               

               
Cow position:
               
chr29:41747179-41747452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
146, 20
               

               
Conread position:
               
207-399
               

               
Cow position:
               
chr29:109448-109633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
208-441
               

               
Cow position:
               
chr29:16756794-16757033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
208-468
               

               
Cow position:
               
chr29:22613174-22613426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
158, 25
               

               
Conread position:
               
209-304
               

               
Cow position:
               
chr29:38731365-38731459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
209-406
               

               
Cow position:
               
chr29:4804973-4805169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 99
               

               
Conread position:
               
209-421
               

               
Cow position:
               
chr29:19389226-19389442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
143, 71
               

               
Conread position:
               
209-421
               

               
Cow position:
               
chr29:21236856-21237070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
210-392
               

               
Cow position:
               
chr29:35738529-35738341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
210-477
               

               
Cow position:
               
chr29:35677801-35677538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
211-406
               

               
Cow position:
               
chr29:707203-707014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
137, 52
               

               
Conread position:
               
211-421
               

               
Cow position:
               
chr29:4194379-4194162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
211-476
               

               
Cow position:
               
chr29:34297823-34297564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
182, 145
               

               
Conread position:
               
213-406
               

               
Cow position:
               
chr29:17222152-17222350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 156
               

               
Conread position:
               
216-460
               

               
Cow position:
               
chr29:585029-585270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
205, 26
               

               
Conread position:
               
217-449
               

               
Cow position:
               
chr29:1556680-1556913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
142, 147
               

               
Conread position:
               
218-421
               

               
Cow position:
               
chr29:11562363-11562568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
219-432
               

               
Cow position:
               
chr29:11915567-11915786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
219-476
               

               
Cow position:
               
chr29:18735893-18735635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
97, 160
               

               
Conread position:
               
221-406
               

               
Cow position:
               
chr29:10659595-10659401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
221-468
               

               
Cow position:
               
chr29:23984212-23983959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
18, 229
               

               
Conread position:
               
222-468
               

               
Cow position:
               
chr29:25737664-25737418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
223-468
               

               
Cow position:
               
chr29:20903534-20903289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
86, 144
               

               
Conread position:
               
226-409
               

               
Cow position:
               
chr29:14615499-14615317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
130, 12
               

               
Conread position:
               
227-406
               

               
Cow position:
               
chr29:16309508-16309679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
124, 70
               

               
Conread position:
               
227-476
               

               
Cow position:
               
chr29:25474665-25474927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 229
               

               
Conread position:
               
229-407
               

               
Cow position:
               
chr29:13458818-13458997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
230-402
               

               
Cow position:
               
chr29:23697740-23697912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
233-439
               

               
Cow position:
               
chr29:4520099-4520309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
126, 131
               

               
Conread position:
               
233-464
               

               
Cow position:
               
chr29:22714964-22714730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 130
               

               
Conread position:
               
234-468
               

               
Cow position:
               
chr29:24103784-24103543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 121
               

               
Conread position:
               
235-439
               

               
Cow position:
               
chr29:3711151-3711363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
239-440
               

               
Cow position:
               
chr29:39642946-39643149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
120, 63
               

               
Conread position:
               
242-440
               

               
Cow position:
               
chr29:1229381-1229578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
48, 127
               

               
Conread position:
               
252-468
               

               
Cow position:
               
chr29:28446477-28446252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 103
               

               
Conread position:
               
254-474
               

               
Cow position:
               
chr29:14484761-14484535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
256-476
               

               
Cow position:
               
chr29:22778395-22778171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 187
               

               
Conread position:
               
262-406
               

               
Cow position:
               
chr29:41364902-41365049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               
Show alignments to all cow chromosomes.