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Cow genome map

           
Conread name:
           
Tes1-TES01C090030
        

               
Conread position:
               
9-244
               

               
Cow position:
               
chr1:3966006-3965775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
20, 126
               

               
Conread position:
               
10-265
               

               
Cow position:
               
chr1:27463298-27463046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
12-324
               

               
Cow position:
               
chr1:78097094-78096776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
5, 55
               

               
Conread position:
               
12-344
               

               
Cow position:
               
chr1:89388511-89388155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
6, 55
               

               
Conread position:
               
12-457
               

               
Cow position:
               
chr1:54206651-54207104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 62
               

               
Conread position:
               
12-468
               

               
Cow position:
               
chr1:24132895-24133354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 56
               

               
Conread position:
               
13-194
               

               
Cow position:
               
chr1:45315465-45315652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
13-205
               

               
Cow position:
               
chr1:83024999-83025189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
13-225
               

               
Cow position:
               
chr1:102529687-102529902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 102
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr1:81481219-81481437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
13-240
               

               
Cow position:
               
chr1:48206371-48206596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
13-243
               

               
Cow position:
               
chr1:46143302-46143526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
13-245
               

               
Cow position:
               
chr1:54267774-54267999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 52
               

               
Conread position:
               
13-252
               

               
Cow position:
               
chr1:89157964-89158202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
13-255
               

               
Cow position:
               
chr1:35671702-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
13-258
               

               
Cow position:
               
chr1:102305981-102306222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 53
               

               
Conread position:
               
13-261
               

               
Cow position:
               
chr1:86110576-86110812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
13-261
               

               
Cow position:
               
chr1:86682401-86682643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
13-261
               

               
Cow position:
               
chr1:89449064-89448816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
13-262
               

               
Cow position:
               
chr1:79640123-79640373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
13-264
               

               
Cow position:
               
chr1:41137982-41138216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
13-265
               

               
Cow position:
               
chr1:17196459-17196715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
13-265
               

               
Cow position:
               
chr1:91023300-91023553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 147
               

               
Conread position:
               
13-276
               

               
Cow position:
               
chr1:98060225-98059954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
13-317
               

               
Cow position:
               
chr1:87197986-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
13-348
               

               
Cow position:
               
chr1:90621340-90621695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
13-354
               

               
Cow position:
               
chr1:58754632-58754971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 45
               

               
Conread position:
               
13-371
               

               
Cow position:
               
chr1:76037346-76037713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
13-375
               

               
Cow position:
               
chr1:12464500-12464871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
13-386
               

               
Cow position:
               
chr1:98031083-98030696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 21
               

               
Conread position:
               
13-400
               

               
Cow position:
               
chr1:43388888-43389280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
13-408
               

               
Cow position:
               
chr1:71078796-71079193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
13-416
               

               
Cow position:
               
chr1:70538772-70538355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
13-418
               

               
Cow position:
               
chr1:10633207-10632803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
243, 17
               

               
Conread position:
               
13-420
               

               
Cow position:
               
chr1:5597046-5597451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
13-422
               

               
Cow position:
               
chr1:75745029-75744606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 321
               

               
Conread position:
               
13-426
               

               
Cow position:
               
chr1:84811775-84812194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
13-428
               

               
Cow position:
               
chr1:61885078-61884655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
13-428
               

               
Cow position:
               
chr1:68817634-68818056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 57
               

               
Conread position:
               
13-429
               

               
Cow position:
               
chr1:196840-197263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
13-429
               

               
Cow position:
               
chr1:43505690-43505262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
13-434
               

               
Cow position:
               
chr1:70829065-70828647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
13-438
               

               
Cow position:
               
chr1:13637499-13637937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
13-438
               

               
Cow position:
               
chr1:42887114-42887531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
13-438
               

               
Cow position:
               
chr1:61741797-61742238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 128
               

               
Conread position:
               
13-439
               

               
Cow position:
               
chr1:61005394-61005836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
17, 114
               

               
Conread position:
               
13-441
               

               
Cow position:
               
chr1:73545742-73546188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
13-457
               

               
Cow position:
               
chr1:53398139-53397696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
13-462
               

               
Cow position:
               
chr1:81290670-81290228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
13-464
               

               
Cow position:
               
chr1:53458864-53458410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
13-466
               

               
Cow position:
               
chr1:81568863-81569333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 53
               

               
Conread position:
               
13-466
               

               
Cow position:
               
chr1:82936438-82936879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
13-466
               

               
Cow position:
               
chr1:95499330-95499792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
13-466
               

               
Cow position:
               
chr1:101916335-101915872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
16-169
               

               
Cow position:
               
chr1:55685815-55685969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr1:88913483-88913237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 109
               

               
Conread position:
               
16-264
               

               
Cow position:
               
chr1:90904594-90904838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
16-265
               

               
Cow position:
               
chr1:20104429-20104183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
16-359
               

               
Cow position:
               
chr1:83072605-83072252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 327
               

               
Conread position:
               
16-362
               

               
Cow position:
               
chr1:96276890-96277249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
16-403
               

               
Cow position:
               
chr1:69678161-69678561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
14, 129
               

               
Conread position:
               
16-420
               

               
Cow position:
               
chr1:14379387-14379782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
16-431
               

               
Cow position:
               
chr1:78811201-78810773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
16-437
               

               
Cow position:
               
chr1:1980946-1981381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 302
               

               
Conread position:
               
16-446
               

               
Cow position:
               
chr1:62964431-62964001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 185
               

               
Conread position:
               
16-457
               

               
Cow position:
               
chr1:25383832-25383374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 157
               

               
Conread position:
               
16-462
               

               
Cow position:
               
chr1:57575601-57576055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
16-466
               

               
Cow position:
               
chr1:41697216-41696764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
17-207
               

               
Cow position:
               
chr1:41027234-41027046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
18-265
               

               
Cow position:
               
chr1:56618495-56618736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
18-397
               

               
Cow position:
               
chr1:55705083-55705483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
18-462
               

               
Cow position:
               
chr1:41056841-41056391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
18-466
               

               
Cow position:
               
chr1:84255924-84255456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
19-203
               

               
Cow position:
               
chr1:19962209-19962029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
19-323
               

               
Cow position:
               
chr1:42175888-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
19-385
               

               
Cow position:
               
chr1:8287470-8287831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
19-416
               

               
Cow position:
               
chr1:78857166-78857570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
19-426
               

               
Cow position:
               
chr1:16766926-16767343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
19-441
               

               
Cow position:
               
chr1:21954067-21954492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
19-441
               

               
Cow position:
               
chr1:22730893-22730489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
19-466
               

               
Cow position:
               
chr1:22729215-22728751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
19-466
               

               
Cow position:
               
chr1:53374590-53374137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 57
               

               
Conread position:
               
21-421
               

               
Cow position:
               
chr1:50930822-50931222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
21-428
               

               
Cow position:
               
chr1:34686329-34685935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
22-466
               

               
Cow position:
               
chr1:91816613-91817068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 5
               

               
Conread position:
               
27-236
               

               
Cow position:
               
chr1:79146667-79146878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
58, 96
               

               
Conread position:
               
27-265
               

               
Cow position:
               
chr1:82513206-82513441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
167, 38
               

               
Conread position:
               
27-337
               

               
Cow position:
               
chr1:22526025-22525716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
27-419
               

               
Cow position:
               
chr1:57637511-57637121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
43, 179
               

               
Conread position:
               
27-441
               

               
Cow position:
               
chr1:89381425-89381004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
27-454
               

               
Cow position:
               
chr1:93499770-93499337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
27-466
               

               
Cow position:
               
chr1:56225620-56225181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 37
               

               
Conread position:
               
27-466
               

               
Cow position:
               
chr1:76019546-76019977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
29-240
               

               
Cow position:
               
chr1:80584577-80584370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
29-424
               

               
Cow position:
               
chr1:29935240-29935637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 53
               

               
Conread position:
               
29-462
               

               
Cow position:
               
chr1:89341832-89342282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
30-466
               

               
Cow position:
               
chr1:33330946-33331367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
32-237
               

               
Cow position:
               
chr1:83463727-83463535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
32-251
               

               
Cow position:
               
chr1:95072477-95072258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
33-261
               

               
Cow position:
               
chr1:67688436-67688661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
35-261
               

               
Cow position:
               
chr1:80841790-80841571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 153
               

               
Conread position:
               
35-386
               

               
Cow position:
               
chr1:7971560-7971212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 168
               

               
Conread position:
               
38-386
               

               
Cow position:
               
chr1:93044158-93043807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
38-428
               

               
Cow position:
               
chr1:6941610-6941206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
39-229
               

               
Cow position:
               
chr1:816272-816461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
39-408
               

               
Cow position:
               
chr1:52995166-52994784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 368
               

               
Conread position:
               
39-419
               

               
Cow position:
               
chr1:71253418-71253806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 30
               

               
Conread position:
               
39-465
               

               
Cow position:
               
chr1:81613526-81613089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
41-466
               

               
Cow position:
               
chr1:69264944-69264525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
44-208
               

               
Cow position:
               
chr1:82556273-82556439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
44-242
               

               
Cow position:
               
chr1:79004104-79003911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
44-256
               

               
Cow position:
               
chr1:23998799-23999003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
44-256
               

               
Cow position:
               
chr1:77232443-77232650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 150
               

               
Conread position:
               
44-261
               

               
Cow position:
               
chr1:7023256-7023039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
41, 192
               

               
Conread position:
               
44-261
               

               
Cow position:
               
chr1:41047169-41047385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
172, 22
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr1:50992065-50991848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
174, 44
               

               
Conread position:
               
44-326
               

               
Cow position:
               
chr1:3882326-3882627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
44-375
               

               
Cow position:
               
chr1:62036936-62036593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
44-380
               

               
Cow position:
               
chr1:97779126-97778783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
44-387
               

               
Cow position:
               
chr1:52912765-52913088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
44-419
               

               
Cow position:
               
chr1:47233345-47233726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
44-421
               

               
Cow position:
               
chr1:85162412-85162800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 208
               

               
Conread position:
               
44-424
               

               
Cow position:
               
chr1:45555498-45555106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
217, 21
               

               
Conread position:
               
44-428
               

               
Cow position:
               
chr1:65103751-65103375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
44-428
               

               
Cow position:
               
chr1:95764960-95765349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
44-441
               

               
Cow position:
               
chr1:98551852-98551444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
44-466
               

               
Cow position:
               
chr1:68253730-68253294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 189
               

               
Conread position:
               
45-326
               

               
Cow position:
               
chr1:45553111-45553393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
45-429
               

               
Cow position:
               
chr1:22836535-22836141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
45-457
               

               
Cow position:
               
chr1:52039770-52039349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
46-331
               

               
Cow position:
               
chr1:85647649-85647949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
213, 42
               

               
Conread position:
               
46-424
               

               
Cow position:
               
chr1:96947588-96947950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
46-437
               

               
Cow position:
               
chr1:96136597-96136216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
46-471
               

               
Cow position:
               
chr1:100800482-100800055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
48-261
               

               
Cow position:
               
chr1:71295160-71295387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 194
               

               
Conread position:
               
48-321
               

               
Cow position:
               
chr1:97090458-97090167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 152
               

               
Conread position:
               
48-427
               

               
Cow position:
               
chr1:39068825-39069210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 150
               

               
Conread position:
               
48-428
               

               
Cow position:
               
chr1:3138042-3137672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
48-429
               

               
Cow position:
               
chr1:37321871-37322267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
48-456
               

               
Cow position:
               
chr1:74822580-74822163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
48-460
               

               
Cow position:
               
chr1:3166945-3167357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 20
               

               
Conread position:
               
55-244
               

               
Cow position:
               
chr1:30136230-30136419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
56-466
               

               
Cow position:
               
chr1:51968585-51968173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
58-396
               

               
Cow position:
               
chr1:52052597-52052932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
58-449
               

               
Cow position:
               
chr1:44125517-44125919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
58-462
               

               
Cow position:
               
chr1:79844586-79844176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 141
               

               
Conread position:
               
59-429
               

               
Cow position:
               
chr1:54478449-54478061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 290
               

               
Conread position:
               
59-441
               

               
Cow position:
               
chr1:89509801-89510205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 170
               

               
Conread position:
               
59-466
               

               
Cow position:
               
chr1:72304269-72304667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 179
               

               
Conread position:
               
60-265
               

               
Cow position:
               
chr1:99793667-99793458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
60-429
               

               
Cow position:
               
chr1:39509939-39510303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
25, 132
               

               
Conread position:
               
60-457
               

               
Cow position:
               
chr1:22827277-22826879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 244
               

               
Conread position:
               
60-462
               

               
Cow position:
               
chr1:19466170-19465766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
207, 26
               

               
Conread position:
               
60-462
               

               
Cow position:
               
chr1:95177056-95176642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 64
               

               
Conread position:
               
60-466
               

               
Cow position:
               
chr1:48105317-48105733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
60-466
               

               
Cow position:
               
chr1:85029073-85028664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 153
               

               
Conread position:
               
60-466
               

               
Cow position:
               
chr1:89350084-89349680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 205
               

               
Conread position:
               
61-243
               

               
Cow position:
               
chr1:78066419-78066602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 128
               

               
Conread position:
               
61-261
               

               
Cow position:
               
chr1:18780211-18780417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
24, 159
               

               
Conread position:
               
61-404
               

               
Cow position:
               
chr1:102785071-102784724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 35
               

               
Conread position:
               
61-421
               

               
Cow position:
               
chr1:5135591-5135944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
9, 117
               

               
Conread position:
               
63-429
               

               
Cow position:
               
chr1:80900235-80899847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
64-451
               

               
Cow position:
               
chr1:72285953-72286331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 174
               

               
Conread position:
               
64-457
               

               
Cow position:
               
chr1:69539806-69539409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
66-258
               

               
Cow position:
               
chr1:52467416-52467223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
66-439
               

               
Cow position:
               
chr1:97954355-97954719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
69-338
               

               
Cow position:
               
chr1:12978792-12978506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 131
               

               
Conread position:
               
69-460
               

               
Cow position:
               
chr1:20205134-20204734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 28
               

               
Conread position:
               
71-426
               

               
Cow position:
               
chr1:42555374-42555012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
13, 264
               

               
Conread position:
               
71-477
               

               
Cow position:
               
chr1:81355595-81356011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 245
               

               
Conread position:
               
72-261
               

               
Cow position:
               
chr1:65028641-65028450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
72-465
               

               
Cow position:
               
chr1:3720337-3720722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
73-395
               

               
Cow position:
               
chr1:7186893-7186560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 192
               

               
Conread position:
               
73-426
               

               
Cow position:
               
chr1:73584305-73584660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
188, 66
               

               
Conread position:
               
73-466
               

               
Cow position:
               
chr1:45288765-45289168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 128
               

               
Conread position:
               
74-247
               

               
Cow position:
               
chr1:86912545-86912371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
74-377
               

               
Cow position:
               
chr1:62291596-62291895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
74-446
               

               
Cow position:
               
chr1:101634817-101634423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
74-457
               

               
Cow position:
               
chr1:64678800-64678412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 125
               

               
Conread position:
               
74-471
               

               
Cow position:
               
chr1:92434104-92433719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
77-390
               

               
Cow position:
               
chr1:85867690-85867372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
143, 307
               

               
Conread position:
               
77-434
               

               
Cow position:
               
chr1:96478801-96478427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
99, 122
               

               
Conread position:
               
77-466
               

               
Cow position:
               
chr1:78092138-78091735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
190, 381
               

               
Conread position:
               
83-378
               

               
Cow position:
               
chr1:99512171-99512463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
174, 14
               

               
Conread position:
               
84-263
               

               
Cow position:
               
chr1:37124223-37124042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
113, 130
               

               
Conread position:
               
91-451
               

               
Cow position:
               
chr1:97611573-97611932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
126, 85
               

               
Conread position:
               
91-460
               

               
Cow position:
               
chr1:48444107-48444473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
187, 110
               

               
Conread position:
               
91-461
               

               
Cow position:
               
chr1:90868354-90868730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
187, 109
               

               
Conread position:
               
92-409
               

               
Cow position:
               
chr1:44507059-44506727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
102, 244
               

               
Conread position:
               
97-408
               

               
Cow position:
               
chr1:54732404-54732697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
125, 139
               

               
Conread position:
               
97-418
               

               
Cow position:
               
chr1:81563826-81563483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 290
               

               
Conread position:
               
97-422
               

               
Cow position:
               
chr1:93810510-93810189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
137, 99
               

               
Conread position:
               
97-428
               

               
Cow position:
               
chr1:29975519-29975857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
106, 11
               

               
Conread position:
               
97-438
               

               
Cow position:
               
chr1:41735539-41735895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
97-440
               

               
Cow position:
               
chr1:92436909-92437263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
97-448
               

               
Cow position:
               
chr1:40600126-40599773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
107, 245
               

               
Conread position:
               
97-457
               

               
Cow position:
               
chr1:97761681-97761340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
120, 101
               

               
Conread position:
               
97-466
               

               
Cow position:
               
chr1:20384542-20384922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 52
               

               
Conread position:
               
98-261
               

               
Cow position:
               
chr1:8128887-8129052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
98-433
               

               
Cow position:
               
chr1:85774537-85774193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
73, 94
               

               
Conread position:
               
99-260
               

               
Cow position:
               
chr1:61560644-61560807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
99-466
               

               
Cow position:
               
chr1:88652715-88652334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 133
               

               
Conread position:
               
100-364
               

               
Cow position:
               
chr1:89498031-89497769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
102-237
               

               
Cow position:
               
chr1:80904843-80904709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
102-260
               

               
Cow position:
               
chr1:261406-261564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
102-308
               

               
Cow position:
               
chr1:87440543-87440324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
103-400
               

               
Cow position:
               
chr1:88304380-88304090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
104-261
               

               
Cow position:
               
chr1:91369935-91370090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
106-460
               

               
Cow position:
               
chr1:100421897-100421550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
173, 84
               

               
Conread position:
               
108-466
               

               
Cow position:
               
chr1:82884322-82884682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
110-462
               

               
Cow position:
               
chr1:1991350-1991723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
122-475
               

               
Cow position:
               
chr1:77620602-77620240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 231
               

               
Conread position:
               
123-453
               

               
Cow position:
               
chr1:97755575-97755242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
94, 266
               

               
Conread position:
               
125-465
               

               
Cow position:
               
chr1:44155303-44154970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
130-477
               

               
Cow position:
               
chr1:52329470-52329835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
62, 300
               

               
Conread position:
               
135-397
               

               
Cow position:
               
chr1:62920211-62919947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
64, 135
               

               
Conread position:
               
145-434
               

               
Cow position:
               
chr1:72803209-72803505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
152-439
               

               
Cow position:
               
chr1:1403455-1403741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
157-456
               

               
Cow position:
               
chr1:71946349-71946657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
55, 139
               

               
Conread position:
               
159-455
               

               
Cow position:
               
chr1:35769456-35769160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
98, 207
               

               
Conread position:
               
159-480
               

               
Cow position:
               
chr1:77099528-77099848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
163-409
               

               
Cow position:
               
chr1:94404229-94403975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
98, 175
               

               
Conread position:
               
165-466
               

               
Cow position:
               
chr1:67821197-67821515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 52
               

               
Conread position:
               
176-466
               

               
Cow position:
               
chr1:3456872-3456575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
71, 152
               

               
Conread position:
               
182-441
               

               
Cow position:
               
chr1:41092891-41093143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
199-465
               

               
Cow position:
               
chr1:100770768-100771030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
79, 68
               

               
Conread position:
               
254-426
               

               
Cow position:
               
chr1:56618767-56618934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
107, 9
               

               
Conread position:
               
261-388
               

               
Cow position:
               
chr1:99792718-99792591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
263-408
               

               
Cow position:
               
chr1:25281775-25281916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
263-420
               

               
Cow position:
               
chr1:85865684-85865532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
145, 41
               
Show alignments to all cow chromosomes.