Cow genome map

Conread name: Tes1-TES01C090030

Conread position: 3-265
Cow position: chr24:39523302-39523563 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 15, 65

Conread position: 4-272
Cow position: chr24:43537108-43536830 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 26, 192

Conread position: 5-359
Cow position: chr24:29539785-29540133 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 241
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 12, 63

Conread position: 9-243
Cow position: chr24:13948264-13948027 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 70

Conread position: 11-425
Cow position: chr24:27725873-27726292 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 304

Conread position: 12-466
Cow position: chr24:28496444-28496916 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 54

Conread position: 13-175
Cow position: chr24:3412817-3412656 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 70

Conread position: 13-201
Cow position: chr24:22133303-22133118 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 76, 42

Conread position: 13-209
Cow position: chr24:28510927-28510737 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 40

Conread position: 13-237
Cow position: chr24:15288963-15288732 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 52

Conread position: 13-247
Cow position: chr24:27284960-27284722 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 17, 128

Conread position: 13-253
Cow position: chr24:230416-230172 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 26

Conread position: 13-261
Cow position: chr24:28234176-28233937 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 17, 24

Conread position: 13-266
Cow position: chr24:29561442-29561691 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 17, 41

Conread position: 13-267
Cow position: chr24:37974848-37975099 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 17, 43

Conread position: 13-310
Cow position: chr24:18356917-18357230 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 52

Conread position: 13-359
Cow position: chr24:31359454-31359100 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 17, 43

Conread position: 13-384
Cow position: chr24:10499354-10498963 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 119

Conread position: 13-414
Cow position: chr24:30313893-30314313 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 43

Conread position: 13-416
Cow position: chr24:35675667-35675264 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 288
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 17, 43

Conread position: 13-419
Cow position: chr24:24490889-24491296 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 17

Conread position: 13-462
Cow position: chr24:11887292-11886838 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 57

Conread position: 13-462
Cow position: chr24:17104433-17104888 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 88

Conread position: 13-462
Cow position: chr24:27844397-27844844 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 46

Conread position: 13-466
Cow position: chr24:5142077-5141606 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 35

Conread position: 13-466
Cow position: chr24:20874816-20874352 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 52

Conread position: 13-466
Cow position: chr24:30236008-30235550 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 123

Conread position: 13-466
Cow position: chr24:43028192-43028660 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 144

Conread position: 16-363
Cow position: chr24:22689440-22689812 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 253
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 15, 55

Conread position: 16-421
Cow position: chr24:43371376-43370963 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 286
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 12, 50

Conread position: 16-449
Cow position: chr24:3165953-3165509 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 49

Conread position: 17-245
Cow position: chr24:37823656-37823432 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 12, 51

Conread position: 18-451
Cow position: chr24:17311093-17311522 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 47

Conread position: 19-339
Cow position: chr24:16089362-16089030 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 216
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 174

Conread position: 19-345
Cow position: chr24:28990692-28990357 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 11, 66

Conread position: 19-441
Cow position: chr24:28063076-28062637 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 47

Conread position: 21-428
Cow position: chr24:31816705-31816294 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 49

Conread position: 21-466
Cow position: chr24:32054781-32054343 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 36

Conread position: 23-305
Cow position: chr24:23186788-23187089 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 0

Conread position: 23-466
Cow position: chr24:2402245-2402705 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 42

Conread position: 27-265
Cow position: chr24:26554473-26554714 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 208

Conread position: 27-435
Cow position: chr24:17294074-17294485 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 264
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 29, 106

Conread position: 27-466
Cow position: chr24:39849771-39850205 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 36

Conread position: 32-466
Cow position: chr24:33153892-33153457 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 32

Conread position: 38-209
Cow position: chr24:27740302-27740134 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 27

Conread position: 38-240
Cow position: chr24:20364301-20364501 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 47, 31

Conread position: 38-397
Cow position: chr24:27607997-27608358 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 259
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 47, 34

Conread position: 38-418
Cow position: chr24:1269891-1269523 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 17

Conread position: 38-466
Cow position: chr24:3493995-3493565 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 158

Conread position: 39-265
Cow position: chr24:18017337-18017112 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 153
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 52, 33

Conread position: 39-407
Cow position: chr24:19769603-19769228 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 262
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 31, 303

Conread position: 42-466
Cow position: chr24:5754942-5754513 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 155

Conread position: 44-240
Cow position: chr24:27713302-27713498 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 45, 25

Conread position: 44-260
Cow position: chr24:27349072-27349290 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 41, 91

Conread position: 44-261
Cow position: chr24:39791643-39791427 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 48, 22

Conread position: 44-265
Cow position: chr24:34008468-34008692 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 150
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 137

Conread position: 44-307
Cow position: chr24:6912259-6912525 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 41, 214

Conread position: 44-431
Cow position: chr24:14648256-14648629 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 249
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 268, 30

Conread position: 46-245
Cow position: chr24:28043080-28042876 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 13, 0

Conread position: 48-261
Cow position: chr24:14457625-14457834 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 37, 18

Conread position: 48-340
Cow position: chr24:6131776-6132080 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 152, 8

Conread position: 49-259
Cow position: chr24:37038000-37037787 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 36, 7

Conread position: 56-261
Cow position: chr24:32095400-32095208 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 28, 47

Conread position: 58-462
Cow position: chr24:15246552-15246957 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 175

Conread position: 58-466
Cow position: chr24:28319118-28319534 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 212

Conread position: 59-466
Cow position: chr24:29063570-29063971 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 7

Conread position: 60-428
Cow position: chr24:16268040-16268394 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 96

Conread position: 60-442
Cow position: chr24:25885070-25885463 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 272
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 40, 28

Conread position: 60-462
Cow position: chr24:31812278-31811863 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 350

Conread position: 60-465
Cow position: chr24:27290960-27290553 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 276
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 24, 181

Conread position: 61-428
Cow position: chr24:8886998-8886625 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 258
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 23, 146

Conread position: 66-257
Cow position: chr24:13353122-13352930 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 129
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 66-381
Cow position: chr24:43927250-43927566 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 23, 69

Conread position: 67-414
Cow position: chr24:36404060-36404424 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 38

Conread position: 69-385
Cow position: chr24:2095802-2096137 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 227
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 272

Conread position: 69-416
Cow position: chr24:27748720-27748375 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 127

Conread position: 69-422
Cow position: chr24:3430813-3430450 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 81

Conread position: 72-438
Cow position: chr24:24755524-24755156 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 248
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 126

Conread position: 96-354
Cow position: chr24:34578925-34579183 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 173
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 138, 69

Conread position: 96-393
Cow position: chr24:44870059-44869758 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 113, 30

Conread position: 97-245
Cow position: chr24:30308502-30308653 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 105, 0

Conread position: 97-330
Cow position: chr24:30897485-30897735 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 107, 0

Conread position: 97-466
Cow position: chr24:201586-201961 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 130

Conread position: 98-466
Cow position: chr24:31324335-31323960 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 255
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 118, 202

Conread position: 99-438
Cow position: chr24:17860209-17860553 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 233

Conread position: 99-466
Cow position: chr24:212036-211653 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 94

Conread position: 102-420
Cow position: chr24:37650720-37650387 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 246

Conread position: 103-375
Cow position: chr24:33221895-33222178 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 112, 222

Conread position: 106-466
Cow position: chr24:2392228-2391863 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 92

Conread position: 106-466
Cow position: chr24:17407431-17407068 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 257
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 106, 92

Conread position: 121-457
Cow position: chr24:32015127-32014805 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 229
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 109, 76

Conread position: 122-354
Cow position: chr24:39833489-39833733 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 145, 73

Conread position: 123-466
Cow position: chr24:28303340-28303678 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 125

Conread position: 161-420
Cow position: chr24:27941026-27941291 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 99, 42

Conread position: 166-471
Cow position: chr24:11876870-11876550 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 166

Conread position: 178-407
Cow position: chr24:11734693-11734452 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 189-375
Cow position: chr24:31786749-31786937 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 201-466
Cow position: chr24:3631457-3631189 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 185
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 66, 151

Conread position: 263-354
Cow position: chr24:11769149-11769058 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 80
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.