Cow genome map

Conread name: Tes1-TES01C090030

Conread position: 4-410
Cow position: chr27:19685925-19685509 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 44

Conread position: 10-454
Cow position: chr27:26999631-26999176 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 317
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 7, 73

Conread position: 12-239
Cow position: chr27:20897226-20897001 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 5, 54

Conread position: 13-170
Cow position: chr27:11133884-11134040 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 52

Conread position: 13-200
Cow position: chr27:7343633-7343444 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 13-202
Cow position: chr27:6106500-6106684 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 51

Conread position: 13-215
Cow position: chr27:27055092-27055285 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 72, 17

Conread position: 13-228
Cow position: chr27:31210346-31210559 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 17, 52

Conread position: 13-229
Cow position: chr27:28478380-28478594 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 17, 35

Conread position: 13-232
Cow position: chr27:19508808-19509030 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 13-236
Cow position: chr27:12459084-12459304 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 87

Conread position: 13-237
Cow position: chr27:590973-590740 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 188

Conread position: 13-244
Cow position: chr27:23560233-23560003 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 17, 46

Conread position: 13-248
Cow position: chr27:31004734-31004972 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 34

Conread position: 13-260
Cow position: chr27:23108106-23107858 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 17, 142

Conread position: 13-261
Cow position: chr27:23452259-23452503 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 60

Conread position: 13-261
Cow position: chr27:23485010-23485257 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 15, 53

Conread position: 13-261
Cow position: chr27:27694979-27694727 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 128

Conread position: 13-265
Cow position: chr27:16103607-16103856 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 84

Conread position: 13-307
Cow position: chr27:23594115-23594422 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 117

Conread position: 13-428
Cow position: chr27:27632797-27632386 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 289
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 72, 16

Conread position: 13-435
Cow position: chr27:20481560-20481170 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 294
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 17, 38

Conread position: 13-456
Cow position: chr27:31219064-31219490 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 300
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 79, 16

Conread position: 13-457
Cow position: chr27:17397655-17397204 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 43

Conread position: 13-462
Cow position: chr27:299578-299127 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 16

Conread position: 13-462
Cow position: chr27:14670584-14670126 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 54

Conread position: 13-466
Cow position: chr27:7412190-7412643 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 52

Conread position: 13-466
Cow position: chr27:10582164-10582623 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 302
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 17, 71

Conread position: 13-466
Cow position: chr27:21669316-21668865 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 33

Conread position: 13-466
Cow position: chr27:22171098-22171559 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 33

Conread position: 13-466
Cow position: chr27:31231283-31230835 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 62

Conread position: 13-471
Cow position: chr27:20828911-20828442 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 46

Conread position: 13-481
Cow position: chr27:19387815-19388293 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 31

Conread position: 16-167
Cow position: chr27:26504103-26504253 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 119

Conread position: 16-171
Cow position: chr27:15859498-15859342 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 15, 121

Conread position: 16-200
Cow position: chr27:15003180-15002994 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 15, 0

Conread position: 16-359
Cow position: chr27:23890732-23891092 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 238
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 14, 190

Conread position: 16-448
Cow position: chr27:22220349-22220796 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 443

Conread position: 17-466
Cow position: chr27:15454012-15454473 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 49

Conread position: 18-441
Cow position: chr27:27389226-27388792 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 54

Conread position: 18-466
Cow position: chr27:22418963-22418507 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 19-398
Cow position: chr27:16705055-16705440 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 269
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 11, 28

Conread position: 19-462
Cow position: chr27:15867195-15867643 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 296
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 11, 37

Conread position: 21-356
Cow position: chr27:426774-427124 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 10, 44

Conread position: 24-460
Cow position: chr27:24331526-24331983 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 313
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 35, 52

Conread position: 27-418
Cow position: chr27:26238835-26239237 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 297

Conread position: 27-437
Cow position: chr27:26959803-26959388 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 290
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 58, 37

Conread position: 32-471
Cow position: chr27:20758214-20757793 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 34

Conread position: 35-460
Cow position: chr27:20068156-20067733 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 30

Conread position: 37-231
Cow position: chr27:29597926-29597735 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 48, 13

Conread position: 38-464
Cow position: chr27:28206622-28207056 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 112

Conread position: 39-254
Cow position: chr27:20517486-20517696 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 147
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 200, 42

Conread position: 40-363
Cow position: chr27:16780697-16781023 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 168, 16

Conread position: 44-202
Cow position: chr27:30489581-30489424 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 25

Conread position: 44-261
Cow position: chr27:26407330-26407121 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 41, 22

Conread position: 44-347
Cow position: chr27:16589873-16589570 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 40, 20

Conread position: 44-426
Cow position: chr27:20795620-20796005 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 88

Conread position: 44-462
Cow position: chr27:20628894-20629284 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 135

Conread position: 44-466
Cow position: chr27:7212884-7212462 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 22

Conread position: 44-466
Cow position: chr27:27136691-27136274 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 303
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 23

Conread position: 44-466
Cow position: chr27:30407207-30406771 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 304
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 41, 21

Conread position: 45-468
Cow position: chr27:22035548-22035111 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 11

Conread position: 47-396
Cow position: chr27:11296098-11296449 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 238
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 28, 188

Conread position: 47-433
Cow position: chr27:4672842-4673249 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 285

Conread position: 48-471
Cow position: chr27:24446314-24445891 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 8

Conread position: 49-414
Cow position: chr27:16478504-16478139 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 246
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 36, 86

Conread position: 50-235
Cow position: chr27:237104-237288 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 63

Conread position: 56-277
Cow position: chr27:15378631-15378419 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 155, 10

Conread position: 58-462
Cow position: chr27:23483071-23483481 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 26

Conread position: 60-366
Cow position: chr27:4944671-4944367 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 25, 173

Conread position: 60-466
Cow position: chr27:4386218-4385805 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 141

Conread position: 61-317
Cow position: chr27:8405978-8405720 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 15, 133

Conread position: 61-376
Cow position: chr27:15409192-15408872 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 277

Conread position: 64-421
Cow position: chr27:20553579-20553933 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 113

Conread position: 65-296
Cow position: chr27:20092986-20092743 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 65-448
Cow position: chr27:16284324-16284715 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 16

Conread position: 66-457
Cow position: chr27:1122881-1123269 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 80

Conread position: 67-265
Cow position: chr27:29504800-29504598 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 138
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 69-466
Cow position: chr27:20641481-20641083 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 17

Conread position: 77-463
Cow position: chr27:20869821-20869429 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 278
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 197, 111

Conread position: 77-466
Cow position: chr27:29977112-29977515 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 266
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 170, 252

Conread position: 88-260
Cow position: chr27:16625772-16625941 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 97-424
Cow position: chr27:30354463-30354126 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 227
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 164, 248

Conread position: 97-448
Cow position: chr27:10979744-10980106 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 103

Conread position: 97-477
Cow position: chr27:4819831-4819439 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 255
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 66, 16

Conread position: 99-422
Cow position: chr27:8430555-8430222 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 217
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 37, 30

Conread position: 103-384
Cow position: chr27:3784-4067 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 103, 63

Conread position: 105-259
Cow position: chr27:23510878-23511032 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 104, 17

Conread position: 105-471
Cow position: chr27:23576650-23576274 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 248
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 7, 100

Conread position: 106-441
Cow position: chr27:30890181-30890522 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 160, 79

Conread position: 106-457
Cow position: chr27:13410272-13409917 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 95, 112

Conread position: 106-462
Cow position: chr27:435124-435500 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 254
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 108, 79

Conread position: 111-344
Cow position: chr27:20789484-20789240 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 93, 226

Conread position: 115-266
Cow position: chr27:24306728-24306877 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 93, 19

Conread position: 182-446
Cow position: chr27:30856418-30856150 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 63, 141

Conread position: 194-435
Cow position: chr27:8334677-8334915 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 225, 54

Show alignments to all cow chromosomes.