Cow genome map

Conread name: Tes1-TES01C090030

Conread position: 9-466
Cow position: chr29:31786839-31786373 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 317
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 21, 9

Conread position: 12-237
Cow position: chr29:30548937-30548708 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 5, 55

Conread position: 12-359
Cow position: chr29:25092264-25091910 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 18, 61

Conread position: 13-181
Cow position: chr29:19363867-19363700 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 17, 50

Conread position: 13-193
Cow position: chr29:7290931-7290753 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 41

Conread position: 13-195
Cow position: chr29:22723758-22723576 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 17, 57

Conread position: 13-202
Cow position: chr29:17804689-17804502 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 43

Conread position: 13-203
Cow position: chr29:32197853-32197664 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 52

Conread position: 13-237
Cow position: chr29:32176827-32176614 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 42

Conread position: 13-245
Cow position: chr29:29324261-29324487 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 103

Conread position: 13-248
Cow position: chr29:23825053-23825295 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 57

Conread position: 13-257
Cow position: chr29:20770503-20770258 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 32, 127

Conread position: 13-261
Cow position: chr29:7624327-7624087 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 26

Conread position: 13-261
Cow position: chr29:34358818-34359069 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 17, 240

Conread position: 13-266
Cow position: chr29:1007977-1007722 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 18, 34

Conread position: 13-323
Cow position: chr29:22028802-22029106 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 213
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 72, 17

Conread position: 13-396
Cow position: chr29:19949464-19949073 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 53

Conread position: 13-410
Cow position: chr29:25737257-25737667 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 13-421
Cow position: chr29:22613582-22613174 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 282
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 16, 43

Conread position: 13-424
Cow position: chr29:29769195-29769610 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 288
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 15, 44

Conread position: 13-428
Cow position: chr29:12680317-12679886 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 189

Conread position: 13-456
Cow position: chr29:5893008-5892555 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 222

Conread position: 13-457
Cow position: chr29:17110114-17109672 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 53

Conread position: 13-465
Cow position: chr29:36531025-36530559 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 52

Conread position: 13-466
Cow position: chr29:9709852-9709394 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 45

Conread position: 13-466
Cow position: chr29:40117724-40117266 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 13-467
Cow position: chr29:28196860-28197314 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 18

Conread position: 14-262
Cow position: chr29:1615085-1614835 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 51

Conread position: 16-237
Cow position: chr29:44139089-44139311 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 48

Conread position: 16-270
Cow position: chr29:21666242-21665989 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 29

Conread position: 16-271
Cow position: chr29:5063299-5063047 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 175
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 14, 31

Conread position: 18-302
Cow position: chr29:31944022-31943734 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 27

Conread position: 18-438
Cow position: chr29:35501511-35501926 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 11

Conread position: 19-265
Cow position: chr29:17297291-17297041 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 161
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 19-394
Cow position: chr29:23844993-23844597 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 256
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 19-422
Cow position: chr29:109833-109448 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 273
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 10, 35

Conread position: 19-429
Cow position: chr29:41531004-41530581 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 281
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 317

Conread position: 19-466
Cow position: chr29:29975192-29974739 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 82

Conread position: 24-417
Cow position: chr29:28674555-28674943 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 260
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 12, 210

Conread position: 27-321
Cow position: chr29:31674775-31674465 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 209
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 183, 29

Conread position: 27-359
Cow position: chr29:3100122-3100461 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 215
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 40, 197

Conread position: 27-411
Cow position: chr29:1557073-1556681 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 54

Conread position: 30-462
Cow position: chr29:36217253-36216818 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 105

Conread position: 32-245
Cow position: chr29:28840293-28840080 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 33

Conread position: 32-466
Cow position: chr29:4480034-4480479 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 127

Conread position: 39-328
Cow position: chr29:23243746-23244052 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 50, 138

Conread position: 39-357
Cow position: chr29:27589055-27588722 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 226
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 59, 133

Conread position: 39-426
Cow position: chr29:18085704-18085324 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 197

Conread position: 44-237
Cow position: chr29:38978656-38978464 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 41, 14

Conread position: 44-359
Cow position: chr29:36210266-36209965 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 31

Conread position: 44-466
Cow position: chr29:19125447-19125055 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 287
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 41, 20

Conread position: 46-426
Cow position: chr29:22175804-22175427 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 253
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 38

Conread position: 46-466
Cow position: chr29:41811464-41811879 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 90

Conread position: 48-344
Cow position: chr29:41112758-41113045 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 37, 103

Conread position: 48-396
Cow position: chr29:34773614-34773964 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 235
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 37, 18

Conread position: 48-438
Cow position: chr29:39111193-39111586 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 8

Conread position: 49-237
Cow position: chr29:38979953-38980136 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 102, 30

Conread position: 52-231
Cow position: chr29:4003009-4002829 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 12

Conread position: 53-350
Cow position: chr29:5186375-5186689 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 32, 0

Conread position: 59-466
Cow position: chr29:4874769-4875208 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 6

Conread position: 59-466
Cow position: chr29:26778993-26778586 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 7

Conread position: 60-245
Cow position: chr29:23220390-23220575 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 25, 43

Conread position: 60-259
Cow position: chr29:29176506-29176702 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 25, 40

Conread position: 60-416
Cow position: chr29:8926350-8926715 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 60-466
Cow position: chr29:39567792-39567381 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 14

Conread position: 66-194
Cow position: chr29:742544-742673 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 66-363
Cow position: chr29:17154883-17154572 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 208
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 76

Conread position: 66-381
Cow position: chr29:23155331-23155029 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 93

Conread position: 66-458
Cow position: chr29:22162144-22162554 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 261

Conread position: 67-252
Cow position: chr29:18012662-18012474 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 68-327
Cow position: chr29:27826623-27826354 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 190
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 67

Conread position: 68-399
Cow position: chr29:24578966-24578637 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 203

Conread position: 69-259
Cow position: chr29:27329994-27329805 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 142, 0

Conread position: 72-350
Cow position: chr29:44988695-44988972 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 194
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 161, 23

Conread position: 72-399
Cow position: chr29:4520435-4520096 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 12, 72

Conread position: 77-420
Cow position: chr29:19389571-19389226 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 229
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 143, 121

Conread position: 77-466
Cow position: chr29:20673717-20674113 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 270
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 138, 121

Conread position: 77-466
Cow position: chr29:29588833-29589219 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 262
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 121

Conread position: 88-411
Cow position: chr29:11562695-11562363 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 159, 103

Conread position: 97-401
Cow position: chr29:24103468-24103790 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 106, 48

Conread position: 97-418
Cow position: chr29:34297495-34297823 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 108, 133

Conread position: 97-466
Cow position: chr29:732693-732321 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 256
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 106, 28

Conread position: 97-466
Cow position: chr29:17607491-17607111 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 358

Conread position: 98-261
Cow position: chr29:29314580-29314744 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 113, 0

Conread position: 98-424
Cow position: chr29:9938008-9938331 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 214
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 94, 10

Conread position: 102-467
Cow position: chr29:26615652-26616042 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 231

Conread position: 103-233
Cow position: chr29:31477046-31477178 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 92

Conread position: 103-362
Cow position: chr29:43009017-43009287 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 136, 82

Conread position: 104-252
Cow position: chr29:27846530-27846383 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 102, 85

Conread position: 113-466
Cow position: chr29:10456508-10456857 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 21

Conread position: 121-428
Cow position: chr29:32655381-32655692 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 213
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 78, 18

Conread position: 122-298
Cow position: chr29:16011613-16011793 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 88, 0

Conread position: 122-462
Cow position: chr29:11135848-11136189 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 33

Conread position: 133-466
Cow position: chr29:4328451-4328129 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 19

Conread position: 136-414
Cow position: chr29:31594093-31594369 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 70, 115

Conread position: 161-466
Cow position: chr29:7407876-7408194 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 33, 296

Conread position: 199-415
Cow position: chr29:42205464-42205252 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 69

Conread position: 200-466
Cow position: chr29:12798891-12798627 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 180
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 76, 126

Conread position: 204-414
Cow position: chr29:30544899-30545116 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 104

Conread position: 263-440
Cow position: chr29:5063021-5062852 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.