Cow genome map
| Conread name: | Tes1-TES01E120001 |
| Conread position: | 1-144 |
| Cow position: | chr1:49795694-49795551 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 5-145 |
| Cow position: | chr1:93499302-93499169 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 6-121 |
| Cow position: | chr1:71135843-71135728 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-153 |
| Cow position: | chr1:52507684-52507823 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 6-153 |
| Cow position: | chr1:89729365-89729512 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 62 |
| Conread position: | 6-153 |
| Cow position: | chr1:92433699-92433559 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 6-153 |
| Cow position: | chr1:95765448-95765594 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 7-131 |
| Cow position: | chr1:100813102-100813226 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 116, 61 |
| Conread position: | 7-135 |
| Cow position: | chr1:39069281-39069406 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 7-138 |
| Cow position: | chr1:69002464-69002334 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 7-144 |
| Cow position: | chr1:101551134-101550999 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 7-148 |
| Cow position: | chr1:61735765-61735899 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 7-149 |
| Cow position: | chr1:32355138-32355273 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-150 |
| Cow position: | chr1:57969394-57969536 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 7-151 |
| Cow position: | chr1:22637715-22637852 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-151 |
| Cow position: | chr1:31414288-31414438 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 58, 134 |
| Conread position: | 7-151 |
| Cow position: | chr1:79278873-79279018 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 7-151 |
| Cow position: | chr1:86114437-86114300 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-151 |
| Cow position: | chr1:95017834-95017981 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 119, 62 |
| Conread position: | 7-152 |
| Cow position: | chr1:10064378-10064522 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 7-152 |
| Cow position: | chr1:30066314-30066170 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:37309833-37309978 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 7-153 |
| Cow position: | chr1:39427594-39427738 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:39479539-39479684 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 7-153 |
| Cow position: | chr1:40531638-40531781 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:46821691-46821548 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 7-153 |
| Cow position: | chr1:52160908-52160768 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:53308715-53308859 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:53397661-53397522 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:55163602-55163464 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:55429306-55429445 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 138, 59 |
| Conread position: | 7-153 |
| Cow position: | chr1:56225155-56225011 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 7-153 |
| Cow position: | chr1:56643955-56644098 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:57957181-57957320 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 7-153 |
| Cow position: | chr1:60554192-60554336 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:73196911-73197063 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:73756773-73756630 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:75249913-75249775 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:76095901-76095756 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:78184384-78184245 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:81569359-81569497 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:82936907-82937046 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:89349659-89349520 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 7-153 |
| Cow position: | chr1:91799308-91799447 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-158 |
| Cow position: | chr1:3340607-3340455 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 103, 52 |
| Conread position: | 7-158 |
| Cow position: | chr1:72104824-72104682 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-162 |
| Cow position: | chr1:10519432-10519285 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 7-163 |
| Cow position: | chr1:26930291-26930439 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 7-193 |
| Cow position: | chr1:21787000-21786816 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 8-148 |
| Cow position: | chr1:53520588-53520445 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 8-148 |
| Cow position: | chr1:75967091-75966953 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 8-151 |
| Cow position: | chr1:98612887-98612748 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 136, 59 |
| Conread position: | 8-152 |
| Cow position: | chr1:81363207-81363071 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 8-153 |
| Cow position: | chr1:14981404-14981550 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 55 |
| Conread position: | 8-153 |
| Cow position: | chr1:70534286-70534430 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 8-153 |
| Cow position: | chr1:84240586-84240444 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 8-156 |
| Cow position: | chr1:71818825-71818971 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 8-161 |
| Cow position: | chr1:1981435-1981580 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 9-162 |
| Cow position: | chr1:95071381-95071236 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 11-119 |
| Cow position: | chr1:52994656-52994549 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 11-141 |
| Cow position: | chr1:39702457-39702328 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 11-151 |
| Cow position: | chr1:48731157-48731296 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 11-153 |
| Cow position: | chr1:26702524-26702659 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 11-153 |
| Cow position: | chr1:43893601-43893457 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 11-153 |
| Cow position: | chr1:44769436-44769577 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 120, 51 |
| Conread position: | 11-153 |
| Cow position: | chr1:52054764-52054623 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 11-153 |
| Cow position: | chr1:55357607-55357748 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 11-153 |
| Cow position: | chr1:57305504-57305372 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 11-153 |
| Cow position: | chr1:73442947-73443085 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 11-153 |
| Cow position: | chr1:82338138-82338276 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 11-153 |
| Cow position: | chr1:95050469-95050609 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 11-159 |
| Cow position: | chr1:56634552-56634405 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 12-145 |
| Cow position: | chr1:20001075-20001207 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 106, 57 |
| Conread position: | 12-153 |
| Cow position: | chr1:72012131-72012268 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 12-158 |
| Cow position: | chr1:56718987-56718848 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 13-151 |
| Cow position: | chr1:29916089-29915953 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 13-153 |
| Cow position: | chr1:33081381-33081525 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 13-160 |
| Cow position: | chr1:101834304-101834165 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 16-153 |
| Cow position: | chr1:101547366-101547502 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 18-149 |
| Cow position: | chr1:95655017-95655148 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-153 |
| Cow position: | chr1:34397128-34397261 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 18-153 |
| Cow position: | chr1:68845789-68845917 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 21-153 |
| Cow position: | chr1:67577740-67577615 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 21-159 |
| Cow position: | chr1:19465729-19465594 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.