Cow genome map

Conread name: Thy1-THY010006F03

Conread position: 10-322
Cow position: chr1:39628036-39627736 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 200
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 144, 0

Conread position: 22-227
Cow position: chr1:23624883-23625079 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 35, 108

Conread position: 22-334
Cow position: chr1:81292761-81293069 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 36, 16

Conread position: 23-228
Cow position: chr1:87914665-87914470 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 38

Conread position: 25-180
Cow position: chr1:25954237-25954387 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 143, 33

Conread position: 26-322
Cow position: chr1:31233050-31232770 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 62

Conread position: 31-299
Cow position: chr1:49728169-49728443 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 26, 7

Conread position: 31-338
Cow position: chr1:88017539-88017232 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 8

Conread position: 32-158
Cow position: chr1:30042023-30042151 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 51

Conread position: 32-210
Cow position: chr1:90370656-90370479 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 24, 59

Conread position: 32-215
Cow position: chr1:19439506-19439323 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 27, 149

Conread position: 32-244
Cow position: chr1:56858515-56858734 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 26, 106

Conread position: 32-277
Cow position: chr1:100132178-100132419 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 140, 21

Conread position: 32-281
Cow position: chr1:74713756-74713997 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 26, 17

Conread position: 32-327
Cow position: chr1:61242009-61242307 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 68

Conread position: 32-332
Cow position: chr1:40420160-40419867 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 223, 54

Conread position: 32-332
Cow position: chr1:57077297-57077615 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 49, 93

Conread position: 32-333
Cow position: chr1:64098986-64098685 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 31

Conread position: 32-333
Cow position: chr1:82572952-82572650 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 103

Conread position: 32-334
Cow position: chr1:14560244-14559957 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 26, 88

Conread position: 32-334
Cow position: chr1:37432669-37432977 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 203

Conread position: 32-334
Cow position: chr1:39244269-39243952 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 26, 128

Conread position: 32-335
Cow position: chr1:6985544-6985253 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 132

Conread position: 32-336
Cow position: chr1:56233171-56233473 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 26, 101

Conread position: 32-337
Cow position: chr1:85525-85833 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 118

Conread position: 32-337
Cow position: chr1:3750197-3750493 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 26

Conread position: 32-340
Cow position: chr1:46268755-46268444 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 236
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 17, 52

Conread position: 32-340
Cow position: chr1:101883904-101884210 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 57

Conread position: 33-316
Cow position: chr1:71555517-71555222 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 159

Conread position: 33-334
Cow position: chr1:9511984-9511695 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 25, 83

Conread position: 49-355
Cow position: chr1:37465703-37465420 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 116, 12

Conread position: 52-326
Cow position: chr1:65155462-65155188 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 125

Conread position: 53-247
Cow position: chr1:3020464-3020267 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 129, 0

Conread position: 53-299
Cow position: chr1:8726399-8726147 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 73, 6

Conread position: 53-310
Cow position: chr1:41092854-41092598 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 192, 77

Conread position: 53-312
Cow position: chr1:64479652-64479391 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 49, 83

Conread position: 53-326
Cow position: chr1:85409551-85409279 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 90

Conread position: 53-330
Cow position: chr1:2599407-2599128 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 177, 79

Conread position: 53-334
Cow position: chr1:11831637-11831903 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 199, 18

Conread position: 53-334
Cow position: chr1:18223550-18223281 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 77

Conread position: 53-337
Cow position: chr1:28512329-28512058 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 66, 0

Conread position: 53-337
Cow position: chr1:93832302-93832575 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 191
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 77, 0

Conread position: 53-340
Cow position: chr1:34892884-34893175 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 77

Conread position: 54-334
Cow position: chr1:28408199-28407926 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 54, 99

Conread position: 54-341
Cow position: chr1:25885781-25885501 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 144, 76

Conread position: 55-332
Cow position: chr1:52207310-52207581 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 183, 92

Conread position: 55-334
Cow position: chr1:81371148-81370882 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 198, 46

Conread position: 55-336
Cow position: chr1:82387248-82387523 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 92, 0

Conread position: 57-333
Cow position: chr1:45978976-45979236 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 53, 73

Conread position: 57-341
Cow position: chr1:37739470-37739195 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 211
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 22, 114

Conread position: 57-343
Cow position: chr1:77755401-77755106 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 58-292
Cow position: chr1:40222480-40222263 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 194, 25

Conread position: 59-215
Cow position: chr1:30518443-30518595 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 61-300
Cow position: chr1:57757518-57757744 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 191, 51

Conread position: 66-337
Cow position: chr1:62041712-62041967 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 187, 63

Conread position: 66-342
Cow position: chr1:63134259-63134517 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 188, 28

Conread position: 71-299
Cow position: chr1:22071982-22072204 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 179, 99

Conread position: 72-335
Cow position: chr1:64745415-64745154 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 13, 71

Conread position: 74-373
Cow position: chr1:101967019-101966724 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 171, 55

Conread position: 82-338
Cow position: chr1:23510442-23510195 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 56, 50

Conread position: 96-340
Cow position: chr1:6866053-6865809 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 161, 83

Conread position: 97-339
Cow position: chr1:39251337-39251589 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 73, 0

Conread position: 109-338
Cow position: chr1:69290514-69290737 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 6, 24

Conread position: 113-334
Cow position: chr1:3746479-3746696 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 139, 18

Conread position: 113-334
Cow position: chr1:31951734-31951952 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 133, 24

Conread position: 116-334
Cow position: chr1:100388080-100387864 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 65

Conread position: 118-298
Cow position: chr1:68332816-68332638 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 134, 12

Conread position: 128-333
Cow position: chr1:59910968-59911175 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 128, 54

Conread position: 129-333
Cow position: chr1:80329564-80329362 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 126, 160

Conread position: 134-317
Cow position: chr1:54365221-54365037 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 115, 47

Conread position: 138-337
Cow position: chr1:11878785-11878585 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 116, 41

Conread position: 173-350
Cow position: chr1:72131253-72131420 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 171, 9

Conread position: 187-334
Cow position: chr1:78885414-78885265 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 27, 46

Conread position: 206-337
Cow position: chr1:53568099-53568234 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 0

Show alignments to all cow chromosomes.