Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 6-299 |
| Cow position: | chr11:27610691-27610976 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 105 |
| Conread position: | 22-230 |
| Cow position: | chr11:25856460-25856664 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 61 |
| Conread position: | 23-277 |
| Cow position: | chr11:77756489-77756232 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 24-337 |
| Cow position: | chr11:39830953-39830652 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 29-295 |
| Cow position: | chr11:57153387-57153117 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 31-334 |
| Cow position: | chr11:12064985-12065272 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 31-339 |
| Cow position: | chr11:87168489-87168201 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 64 |
| Conread position: | 32-261 |
| Cow position: | chr11:35251709-35251490 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 21, 119 |
| Conread position: | 32-272 |
| Cow position: | chr11:80269564-80269338 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 32-290 |
| Cow position: | chr11:40574491-40574235 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 32-294 |
| Cow position: | chr11:10877529-10877793 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 32-309 |
| Cow position: | chr11:58793728-58793450 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 32-323 |
| Cow position: | chr11:34761448-34761159 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 32-334 |
| Cow position: | chr11:18452866-18452572 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 32-334 |
| Cow position: | chr11:25972655-25972364 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 32-337 |
| Cow position: | chr11:43831530-43831231 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 32-337 |
| Cow position: | chr11:74171334-74171033 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 32-339 |
| Cow position: | chr11:15265545-15265239 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 82, 142 |
| Conread position: | 32-339 |
| Cow position: | chr11:25807461-25807149 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 32-339 |
| Cow position: | chr11:82529144-82529465 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 26 |
| Conread position: | 32-342 |
| Cow position: | chr11:18153969-18153664 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 150 |
| Conread position: | 33-230 |
| Cow position: | chr11:84729219-84729412 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 33-374 |
| Cow position: | chr11:77772413-77772078 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 34-292 |
| Cow position: | chr11:8087873-8087623 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 47 |
| Conread position: | 34-316 |
| Cow position: | chr11:12791053-12791327 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 26, 128 |
| Conread position: | 34-319 |
| Cow position: | chr11:34303746-34304030 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 149 |
| Conread position: | 34-327 |
| Cow position: | chr11:34397761-34398054 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 41-299 |
| Cow position: | chr11:70605665-70605925 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 138 |
| Conread position: | 48-148 |
| Cow position: | chr11:77477958-77477858 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-148 |
| Cow position: | chr11:77478632-77478532 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-337 |
| Cow position: | chr11:43855932-43855648 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 58 |
| Conread position: | 53-166 |
| Cow position: | chr11:58579912-58580025 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-175 |
| Cow position: | chr11:21893179-21893060 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 53-255 |
| Cow position: | chr11:77819972-77819786 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 53-299 |
| Cow position: | chr11:77713354-77713114 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 53-323 |
| Cow position: | chr11:69491719-69491980 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 53-333 |
| Cow position: | chr11:15885600-15885874 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 53-334 |
| Cow position: | chr11:1774587-1774304 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 97 |
| Conread position: | 53-334 |
| Cow position: | chr11:5221125-5220855 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 216, 90 |
| Conread position: | 53-334 |
| Cow position: | chr11:15374096-15374360 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 53-334 |
| Cow position: | chr11:24008401-24008675 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 53-340 |
| Cow position: | chr11:55119773-55120054 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 18 |
| Conread position: | 54-334 |
| Cow position: | chr11:44064184-44064467 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 126 |
| Conread position: | 54-336 |
| Cow position: | chr11:17737620-17737899 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 194, 96 |
| Conread position: | 55-300 |
| Cow position: | chr11:11109803-11109555 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 151, 113 |
| Conread position: | 55-334 |
| Cow position: | chr11:22851344-22851620 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 124 |
| Conread position: | 55-334 |
| Cow position: | chr11:57753075-57752796 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 111 |
| Conread position: | 56-231 |
| Cow position: | chr11:63520809-63520976 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 57-337 |
| Cow position: | chr11:21909843-21909549 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 66-338 |
| Cow position: | chr11:35284417-35284674 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 99, 63 |
| Conread position: | 66-348 |
| Cow position: | chr11:19567355-19567624 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 64 |
| Conread position: | 71-340 |
| Cow position: | chr11:55283209-55282928 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 78-231 |
| Cow position: | chr11:60511752-60511600 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 79-255 |
| Cow position: | chr11:57062192-57062360 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 87-334 |
| Cow position: | chr11:29785451-29785690 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 179, 60 |
| Conread position: | 95-337 |
| Cow position: | chr11:54204479-54204244 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 158, 14 |
| Conread position: | 98-337 |
| Cow position: | chr11:27817168-27816934 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 159, 21 |
| Conread position: | 100-337 |
| Cow position: | chr11:64101395-64101635 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 193 |
| Conread position: | 121-333 |
| Cow position: | chr11:53663504-53663704 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 134-362 |
| Cow position: | chr11:30660669-30660900 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 118, 206 |
| Conread position: | 155-339 |
| Cow position: | chr11:16363993-16363807 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 174-334 |
| Cow position: | chr11:34024958-34025113 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 59 |
| Conread position: | 175-334 |
| Cow position: | chr11:80780542-80780704 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 78, 105 |
| Conread position: | 175-342 |
| Cow position: | chr11:9424407-9424574 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 154 |
| Conread position: | 194-342 |
| Cow position: | chr11:53331219-53331373 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 217-334 |
| Cow position: | chr11:35318329-35318443 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.