Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 19-268 |
| Cow position: | chr13:34931549-34931790 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 23-300 |
| Cow position: | chr13:51142719-51142448 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 100 |
| Conread position: | 29-334 |
| Cow position: | chr13:4796122-4796433 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 31-329 |
| Cow position: | chr13:33239815-33240117 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 31-334 |
| Cow position: | chr13:26034577-26034296 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 217, 7 |
| Conread position: | 32-179 |
| Cow position: | chr13:57746120-57746272 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 32-211 |
| Cow position: | chr13:39487625-39487811 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 32-248 |
| Cow position: | chr13:20656627-20656854 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 213 |
| Conread position: | 32-270 |
| Cow position: | chr13:17169497-17169732 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 32-293 |
| Cow position: | chr13:25955326-25955058 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 203 |
| Conread position: | 32-295 |
| Cow position: | chr13:12658015-12658269 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 217, 71 |
| Conread position: | 32-295 |
| Cow position: | chr13:51241024-51241294 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 151 |
| Conread position: | 32-327 |
| Cow position: | chr13:17597078-17597363 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 32-333 |
| Cow position: | chr13:12213780-12214085 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 49 |
| Conread position: | 32-334 |
| Cow position: | chr13:12325408-12325691 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 41 |
| Conread position: | 32-334 |
| Cow position: | chr13:55406970-55407270 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 32-337 |
| Cow position: | chr13:43385103-43385401 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 52 |
| Conread position: | 32-337 |
| Cow position: | chr13:46464518-46464233 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 32-338 |
| Cow position: | chr13:14080144-14079839 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 33-179 |
| Cow position: | chr13:30836034-30836177 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 127, 97 |
| Conread position: | 33-230 |
| Cow position: | chr13:21878378-21878180 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 25, 149 |
| Conread position: | 33-327 |
| Cow position: | chr13:43803224-43803521 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 227 |
| Conread position: | 33-334 |
| Cow position: | chr13:34264787-34264502 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 33-337 |
| Cow position: | chr13:44144103-44143799 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 34-296 |
| Cow position: | chr13:5619380-5619110 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 24, 163 |
| Conread position: | 52-334 |
| Cow position: | chr13:18597038-18596775 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 53-166 |
| Cow position: | chr13:21826479-21826589 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 53-201 |
| Cow position: | chr13:26943133-26943279 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 113, 51 |
| Conread position: | 53-231 |
| Cow position: | chr13:24675992-24676163 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 53-255 |
| Cow position: | chr13:47325565-47325375 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 53-308 |
| Cow position: | chr13:28605741-28605997 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 117 |
| Conread position: | 53-332 |
| Cow position: | chr13:34885302-34885585 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 170, 115 |
| Conread position: | 53-333 |
| Cow position: | chr13:11223095-11222830 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 53-334 |
| Cow position: | chr13:38361970-38361690 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 58 |
| Conread position: | 53-334 |
| Cow position: | chr13:43928912-43928637 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 113, 68 |
| Conread position: | 53-337 |
| Cow position: | chr13:698715-698983 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 198, 43 |
| Conread position: | 53-337 |
| Cow position: | chr13:24404044-24403764 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 20 |
| Conread position: | 53-337 |
| Cow position: | chr13:59997473-59997185 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 63 |
| Conread position: | 53-338 |
| Cow position: | chr13:26255403-26255118 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 123, 77 |
| Conread position: | 53-339 |
| Cow position: | chr13:19115739-19116015 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 82 |
| Conread position: | 54-334 |
| Cow position: | chr13:45497605-45497867 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 274, 41 |
| Conread position: | 55-336 |
| Cow position: | chr13:22984781-22985066 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 198, 12 |
| Conread position: | 55-337 |
| Cow position: | chr13:51435152-51434876 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 150, 17 |
| Conread position: | 55-354 |
| Cow position: | chr13:57611549-57611849 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 173, 107 |
| Conread position: | 60-334 |
| Cow position: | chr13:10854683-10854414 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 51 |
| Conread position: | 62-354 |
| Cow position: | chr13:2416382-2416670 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 67 |
| Conread position: | 65-334 |
| Cow position: | chr13:22193750-22194013 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 26 |
| Conread position: | 71-345 |
| Cow position: | chr13:48580643-48580375 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 79 |
| Conread position: | 73-326 |
| Cow position: | chr13:19015123-19014870 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 134, 106 |
| Conread position: | 77-251 |
| Cow position: | chr13:9103266-9103100 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 78-299 |
| Cow position: | chr13:57246096-57246310 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 90-323 |
| Cow position: | chr13:6921232-6921002 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 163, 40 |
| Conread position: | 103-327 |
| Cow position: | chr13:18839444-18839664 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 108-338 |
| Cow position: | chr13:14708748-14708980 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 109-338 |
| Cow position: | chr13:18541341-18541562 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 113-339 |
| Cow position: | chr13:24198004-24197786 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 134-333 |
| Cow position: | chr13:15489927-15490127 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 118, 46 |
| Conread position: | 135-337 |
| Cow position: | chr13:30951063-30950855 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 146-344 |
| Cow position: | chr13:37498121-37498320 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 150-334 |
| Cow position: | chr13:27795821-27796003 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 27 |
| Conread position: | 150-336 |
| Cow position: | chr13:20876669-20876478 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 154-334 |
| Cow position: | chr13:57746271-57746457 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 195-337 |
| Cow position: | chr13:62210433-62210577 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 70 |
Show alignments to all cow chromosomes.