Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 1-334 |
| Cow position: | chr14:30762436-30762120 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 18-344 |
| Cow position: | chr14:45151978-45152308 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 25-223 |
| Cow position: | chr14:12644383-12644575 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 27-281 |
| Cow position: | chr14:15662469-15662723 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 29-197 |
| Cow position: | chr14:25393851-25393679 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 156 |
| Conread position: | 31-218 |
| Cow position: | chr14:21864261-21864445 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 31-309 |
| Cow position: | chr14:44483207-44483474 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 31-336 |
| Cow position: | chr14:17051327-17051022 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 31-339 |
| Cow position: | chr14:40243922-40243612 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 31-343 |
| Cow position: | chr14:44454194-44453884 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 31-350 |
| Cow position: | chr14:17556388-17556073 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 32-148 |
| Cow position: | chr14:45018741-45018862 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 32-164 |
| Cow position: | chr14:20642915-20643050 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 32-215 |
| Cow position: | chr14:24783408-24783591 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 32-265 |
| Cow position: | chr14:24738994-24738755 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 39 |
| Conread position: | 32-277 |
| Cow position: | chr14:32574899-32574648 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 32-317 |
| Cow position: | chr14:13835614-13835889 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 49 |
| Conread position: | 32-320 |
| Cow position: | chr14:24193073-24192790 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 185, 77 |
| Conread position: | 32-339 |
| Cow position: | chr14:50650287-50649985 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 12 |
| Conread position: | 32-350 |
| Cow position: | chr14:35605565-35605885 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 153 |
| Conread position: | 32-353 |
| Cow position: | chr14:44886303-44885976 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 33-238 |
| Cow position: | chr14:46980264-46980466 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 33-339 |
| Cow position: | chr14:10949762-10950063 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 33-339 |
| Cow position: | chr14:15011725-15012037 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 25, 155 |
| Conread position: | 33-340 |
| Cow position: | chr14:34912205-34912509 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 51-333 |
| Cow position: | chr14:19735032-19735316 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 82 |
| Conread position: | 53-178 |
| Cow position: | chr14:27247189-27247069 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 37 |
| Conread position: | 53-334 |
| Cow position: | chr14:41712739-41712477 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 237, 39 |
| Conread position: | 53-334 |
| Cow position: | chr14:47880394-47880673 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 77 |
| Conread position: | 53-337 |
| Cow position: | chr14:37983682-37983960 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 30 |
| Conread position: | 53-337 |
| Cow position: | chr14:42693370-42693104 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 128, 55 |
| Conread position: | 53-338 |
| Cow position: | chr14:28007332-28007058 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 203, 31 |
| Conread position: | 53-340 |
| Cow position: | chr14:30134115-30134406 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 54-161 |
| Cow position: | chr14:7863581-7863477 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 54-252 |
| Cow position: | chr14:42258683-42258489 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 54-263 |
| Cow position: | chr14:27579058-27579259 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 53, 125 |
| Conread position: | 55-340 |
| Cow position: | chr14:22046565-22046296 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 57-230 |
| Cow position: | chr14:19339971-19340138 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 60-333 |
| Cow position: | chr14:25994305-25994572 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 71-251 |
| Cow position: | chr14:9500206-9500372 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 61, 77 |
| Conread position: | 71-334 |
| Cow position: | chr14:38722572-38722318 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 159, 62 |
| Conread position: | 73-332 |
| Cow position: | chr14:19399569-19399316 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 57 |
| Conread position: | 73-333 |
| Cow position: | chr14:32903930-32904185 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 57 |
| Conread position: | 90-337 |
| Cow position: | chr14:36420352-36420593 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 163, 40 |
| Conread position: | 98-337 |
| Cow position: | chr14:38000079-37999851 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 159, 39 |
| Conread position: | 105-330 |
| Cow position: | chr14:35685425-35685646 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 121-339 |
| Cow position: | chr14:3589260-3589466 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 131, 43 |
| Conread position: | 127-334 |
| Cow position: | chr14:44023921-44023718 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 126, 37 |
| Conread position: | 132-334 |
| Cow position: | chr14:17462945-17462745 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 146-348 |
| Cow position: | chr14:38413119-38412920 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 175-337 |
| Cow position: | chr14:29481207-29481373 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.