Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 1-345 |
| Cow position: | chr15:52131766-52132117 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 118 |
| Conread position: | 20-305 |
| Cow position: | chr15:10581360-10581641 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 23-339 |
| Cow position: | chr15:53712791-53713108 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 31-244 |
| Cow position: | chr15:36864598-36864385 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 160 |
| Conread position: | 31-251 |
| Cow position: | chr15:34551889-34552109 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 31-308 |
| Cow position: | chr15:1888036-1888311 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 31-334 |
| Cow position: | chr15:30570098-30570406 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 32-148 |
| Cow position: | chr15:9072658-9072779 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 32-166 |
| Cow position: | chr15:3593482-3593343 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 32-209 |
| Cow position: | chr15:26365377-26365551 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 32-232 |
| Cow position: | chr15:35042344-35042542 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 32-299 |
| Cow position: | chr15:11997711-11997987 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 32-303 |
| Cow position: | chr15:12048777-12048510 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 32-309 |
| Cow position: | chr15:12283132-12283405 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 32-327 |
| Cow position: | chr15:16972180-16971889 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 26, 102 |
| Conread position: | 32-327 |
| Cow position: | chr15:31855431-31855732 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 135, 97 |
| Conread position: | 32-334 |
| Cow position: | chr15:4622799-4622511 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 32-334 |
| Cow position: | chr15:16669464-16669159 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 32-337 |
| Cow position: | chr15:579016-579312 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 144 |
| Conread position: | 32-337 |
| Cow position: | chr15:17642171-17642462 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 30 |
| Conread position: | 32-340 |
| Cow position: | chr15:26866815-26867100 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 195, 97 |
| Conread position: | 32-344 |
| Cow position: | chr15:19813539-19813222 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 33-290 |
| Cow position: | chr15:38902491-38902251 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 33-334 |
| Cow position: | chr15:6523472-6523180 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 33-337 |
| Cow position: | chr15:25683657-25683966 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 34-158 |
| Cow position: | chr15:41344096-41343975 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 34-334 |
| Cow position: | chr15:23265752-23266040 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 34-342 |
| Cow position: | chr15:8630301-8630606 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 41-331 |
| Cow position: | chr15:18403904-18404180 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 53-278 |
| Cow position: | chr15:37469982-37469749 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 53-334 |
| Cow position: | chr15:9437486-9437761 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 126 |
| Conread position: | 53-334 |
| Cow position: | chr15:44797281-44797000 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 108 |
| Conread position: | 53-340 |
| Cow position: | chr15:21802536-21802812 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 200, 45 |
| Conread position: | 53-354 |
| Cow position: | chr15:49271926-49272216 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 171, 25 |
| Conread position: | 53-375 |
| Cow position: | chr15:14810942-14810625 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 260, 126 |
| Conread position: | 54-335 |
| Cow position: | chr15:49279483-49279198 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 168, 104 |
| Conread position: | 55-232 |
| Cow position: | chr15:36582570-36582400 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 127 |
| Conread position: | 55-320 |
| Cow position: | chr15:9428039-9427768 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 55-334 |
| Cow position: | chr15:53728288-53728013 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 197, 37 |
| Conread position: | 57-333 |
| Cow position: | chr15:52868813-52869082 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 61-334 |
| Cow position: | chr15:39809499-39809772 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 38 |
| Conread position: | 64-333 |
| Cow position: | chr15:11287394-11287122 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 66-336 |
| Cow position: | chr15:5912390-5912117 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 102 |
| Conread position: | 70-255 |
| Cow position: | chr15:1892183-1892006 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 73-337 |
| Cow position: | chr15:28608172-28607901 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 93, 24 |
| Conread position: | 78-334 |
| Cow position: | chr15:582849-583109 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 78-334 |
| Cow position: | chr15:37633375-37633630 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 179, 19 |
| Conread position: | 80-334 |
| Cow position: | chr15:14610242-14609984 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 102, 34 |
| Conread position: | 83-334 |
| Cow position: | chr15:40065906-40066154 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 85-334 |
| Cow position: | chr15:21182012-21182259 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 165, 109 |
| Conread position: | 87-231 |
| Cow position: | chr15:39360161-39360019 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 87-286 |
| Cow position: | chr15:53335368-53335570 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 166, 93 |
| Conread position: | 87-334 |
| Cow position: | chr15:31935553-31935797 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 176, 35 |
| Conread position: | 90-330 |
| Cow position: | chr15:13081335-13081582 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 91-331 |
| Cow position: | chr15:50243316-50243546 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 154, 56 |
| Conread position: | 133-333 |
| Cow position: | chr15:7443868-7443663 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 133-336 |
| Cow position: | chr15:16989556-16989759 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 124, 35 |
| Conread position: | 145-337 |
| Cow position: | chr15:35067005-35067200 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 38 |
| Conread position: | 173-334 |
| Cow position: | chr15:41807438-41807276 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 176-337 |
| Cow position: | chr15:36278089-36277927 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 187-334 |
| Cow position: | chr15:1992771-1992923 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 193-334 |
| Cow position: | chr15:37491608-37491470 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.