Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 22-337 |
| Cow position: | chr16:2722762-2722445 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 28 |
| Conread position: | 24-203 |
| Cow position: | chr16:42406150-42406327 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 142, 21 |
| Conread position: | 27-296 |
| Cow position: | chr16:14423190-14423461 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 30-343 |
| Cow position: | chr16:56373589-56373280 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 111 |
| Conread position: | 32-221 |
| Cow position: | chr16:43741812-43741633 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 32-334 |
| Cow position: | chr16:22785744-22785449 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 32-334 |
| Cow position: | chr16:30572339-30572030 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 32-334 |
| Cow position: | chr16:48894532-48894230 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 32-338 |
| Cow position: | chr16:23878634-23878960 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 26, 136 |
| Conread position: | 32-340 |
| Cow position: | chr16:14799448-14799139 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 152 |
| Conread position: | 32-343 |
| Cow position: | chr16:43850216-43849915 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 64 |
| Conread position: | 32-360 |
| Cow position: | chr16:52650228-52649895 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 141 |
| Conread position: | 32-361 |
| Cow position: | chr16:43850542-43850205 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 141 |
| Conread position: | 33-147 |
| Cow position: | chr16:53516339-53516221 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 115 |
| Conread position: | 33-254 |
| Cow position: | chr16:9703319-9703097 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 33-333 |
| Cow position: | chr16:47781585-47781897 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 155 |
| Conread position: | 33-334 |
| Cow position: | chr16:2371506-2371223 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 25, 101 |
| Conread position: | 34-226 |
| Cow position: | chr16:608591-608402 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 9, 133 |
| Conread position: | 38-344 |
| Cow position: | chr16:12243247-12242947 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 53-305 |
| Cow position: | chr16:15509251-15509497 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 192, 41 |
| Conread position: | 53-323 |
| Cow position: | chr16:30109513-30109250 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 53-326 |
| Cow position: | chr16:45057724-45057997 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 79 |
| Conread position: | 53-327 |
| Cow position: | chr16:4295201-4294942 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 199, 77 |
| Conread position: | 53-327 |
| Cow position: | chr16:23301652-23301921 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 196, 80 |
| Conread position: | 53-333 |
| Cow position: | chr16:3742815-3742530 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 48 |
| Conread position: | 53-334 |
| Cow position: | chr16:23034980-23034703 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 137, 77 |
| Conread position: | 53-336 |
| Cow position: | chr16:41680447-41680164 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 117 |
| Conread position: | 53-337 |
| Cow position: | chr16:13044162-13044445 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 113 |
| Conread position: | 53-340 |
| Cow position: | chr16:16118772-16119061 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 149 |
| Conread position: | 53-342 |
| Cow position: | chr16:48604472-48604201 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 183, 42 |
| Conread position: | 55-178 |
| Cow position: | chr16:47391355-47391473 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 108, 77 |
| Conread position: | 57-173 |
| Cow position: | chr16:11161701-11161823 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 58-321 |
| Cow position: | chr16:37441589-37441331 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 194, 89 |
| Conread position: | 63-321 |
| Cow position: | chr16:37508410-37508663 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 71-332 |
| Cow position: | chr16:26075174-26075444 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 79, 7 |
| Conread position: | 71-334 |
| Cow position: | chr16:4854631-4854379 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 182, 61 |
| Conread position: | 78-339 |
| Cow position: | chr16:5131440-5131184 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 84-334 |
| Cow position: | chr16:24038440-24038693 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 154, 96 |
| Conread position: | 85-341 |
| Cow position: | chr16:12473985-12474245 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 242 |
| Conread position: | 91-334 |
| Cow position: | chr16:53547260-53547022 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 93-327 |
| Cow position: | chr16:32352472-32352703 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 159, 54 |
| Conread position: | 100-334 |
| Cow position: | chr16:17365451-17365685 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 102-337 |
| Cow position: | chr16:14444542-14444771 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 155, 28 |
| Conread position: | 107-339 |
| Cow position: | chr16:52813548-52813334 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 107-347 |
| Cow position: | chr16:14084781-14084542 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 146, 55 |
| Conread position: | 110-222 |
| Cow position: | chr16:19035179-19035070 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 110-337 |
| Cow position: | chr16:31374536-31374305 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 86, 34 |
| Conread position: | 111-255 |
| Cow position: | chr16:29204515-29204376 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 132-327 |
| Cow position: | chr16:34563703-34563516 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 110 |
| Conread position: | 191-337 |
| Cow position: | chr16:37024802-37024656 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 194-339 |
| Cow position: | chr16:10198441-10198590 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 147 |
| Conread position: | 220-353 |
| Cow position: | chr16:14824504-14824369 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 119 |
Show alignments to all cow chromosomes.