Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 29-178 |
| Cow position: | chr17:30358196-30358050 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 32-179 |
| Cow position: | chr17:26631425-26631281 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 32-231 |
| Cow position: | chr17:1309927-1309731 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 133, 26 |
| Conread position: | 32-288 |
| Cow position: | chr17:6980417-6980147 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 32-334 |
| Cow position: | chr17:701727-702038 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 32-334 |
| Cow position: | chr17:2736051-2736351 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 32-334 |
| Cow position: | chr17:3223696-3223983 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 225, 29 |
| Conread position: | 32-337 |
| Cow position: | chr17:7210951-7211252 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 32-337 |
| Cow position: | chr17:30330667-30330944 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 32-342 |
| Cow position: | chr17:19789537-19789234 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 69 |
| Conread position: | 32-346 |
| Cow position: | chr17:18417909-18417588 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 32-356 |
| Cow position: | chr17:28847319-28846992 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 143 |
| Conread position: | 33-156 |
| Cow position: | chr17:35119573-35119450 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-295 |
| Cow position: | chr17:3096053-3096325 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 33-324 |
| Cow position: | chr17:11225517-11225808 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 33-334 |
| Cow position: | chr17:34319813-34319498 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 62 |
| Conread position: | 33-337 |
| Cow position: | chr17:27622577-27622276 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 141 |
| Conread position: | 34-336 |
| Cow position: | chr17:13703631-13703929 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 219, 102 |
| Conread position: | 42-341 |
| Cow position: | chr17:12842608-12842907 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 194 |
| Conread position: | 49-201 |
| Cow position: | chr17:36149762-36149916 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 85 |
| Conread position: | 53-175 |
| Cow position: | chr17:27623620-27623497 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 53-201 |
| Cow position: | chr17:25117325-25117472 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 53-266 |
| Cow position: | chr17:3849087-3849297 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 200, 135 |
| Conread position: | 53-326 |
| Cow position: | chr17:32451306-32451027 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 25 |
| Conread position: | 59-337 |
| Cow position: | chr17:33271414-33271142 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 18 |
| Conread position: | 60-175 |
| Cow position: | chr17:37722774-37722659 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-323 |
| Cow position: | chr17:15450868-15451115 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 78-324 |
| Cow position: | chr17:10261491-10261735 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 11, 104 |
| Conread position: | 86-336 |
| Cow position: | chr17:26481211-26481459 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 8 |
| Conread position: | 91-337 |
| Cow position: | chr17:10850956-10850719 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 95-339 |
| Cow position: | chr17:404254-404505 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 160, 83 |
| Conread position: | 115-334 |
| Cow position: | chr17:43143378-43143155 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 133, 51 |
| Conread position: | 138-337 |
| Cow position: | chr17:4625204-4625398 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 157-344 |
| Cow position: | chr17:19447332-19447145 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 154 |
| Conread position: | 173-368 |
| Cow position: | chr17:13235982-13236183 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 183-334 |
| Cow position: | chr17:14780023-14780178 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 121 |
| Conread position: | 210-334 |
| Cow position: | chr17:25117581-25117709 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 219-334 |
| Cow position: | chr17:3797789-3797908 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.