Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 6-334 |
| Cow position: | chr2:18759762-18760081 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 57, 112 |
| Conread position: | 16-337 |
| Cow position: | chr2:46130648-46130330 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 36 |
| Conread position: | 18-251 |
| Cow position: | chr2:20281782-20282006 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 24-333 |
| Cow position: | chr2:52183240-52183545 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 25-334 |
| Cow position: | chr2:13684884-13685188 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 25-334 |
| Cow position: | chr2:52347478-52347177 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 224, 27 |
| Conread position: | 29-334 |
| Cow position: | chr2:82828072-82827781 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 29 |
| Conread position: | 32-142 |
| Cow position: | chr2:53280340-53280450 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-187 |
| Cow position: | chr2:33391479-33391330 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 32-220 |
| Cow position: | chr2:42286202-42286017 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 32-254 |
| Cow position: | chr2:57501529-57501744 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 32-268 |
| Cow position: | chr2:1287747-1287983 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 32-282 |
| Cow position: | chr2:53716682-53716441 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 32-294 |
| Cow position: | chr2:41490929-41491201 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 32-295 |
| Cow position: | chr2:32393703-32393946 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 255, 29 |
| Conread position: | 32-300 |
| Cow position: | chr2:39411937-39412212 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 24, 153 |
| Conread position: | 32-327 |
| Cow position: | chr2:10566616-10566892 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 32-327 |
| Cow position: | chr2:39196471-39196196 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 32-332 |
| Cow position: | chr2:23811426-23811695 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 32-334 |
| Cow position: | chr2:4478088-4478399 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 109 |
| Conread position: | 32-334 |
| Cow position: | chr2:33791185-33790884 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 32-334 |
| Cow position: | chr2:47746527-47746817 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 32-334 |
| Cow position: | chr2:74848140-74848466 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 32-336 |
| Cow position: | chr2:7365926-7365624 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 32-337 |
| Cow position: | chr2:9043494-9043796 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 32-337 |
| Cow position: | chr2:21697424-21697125 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 32-338 |
| Cow position: | chr2:4927779-4927474 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 23, 164 |
| Conread position: | 32-339 |
| Cow position: | chr2:74387830-74387524 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 84 |
| Conread position: | 33-168 |
| Cow position: | chr2:4670796-4670931 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 130 |
| Conread position: | 33-175 |
| Cow position: | chr2:4830519-4830377 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 26, 136 |
| Conread position: | 33-295 |
| Cow position: | chr2:80604035-80603768 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 33-343 |
| Cow position: | chr2:13048514-13048815 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 34-333 |
| Cow position: | chr2:5767740-5767456 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 227, 24 |
| Conread position: | 35-334 |
| Cow position: | chr2:14037412-14037126 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 99, 23 |
| Conread position: | 37-337 |
| Cow position: | chr2:62463696-62463390 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 145 |
| Conread position: | 38-176 |
| Cow position: | chr2:20887012-20886881 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 41-334 |
| Cow position: | chr2:68962786-68962512 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 47-290 |
| Cow position: | chr2:44983361-44983112 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 12, 136 |
| Conread position: | 51-334 |
| Cow position: | chr2:56823013-56822735 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 53-176 |
| Cow position: | chr2:3628156-3628033 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-219 |
| Cow position: | chr2:77968191-77968028 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 145, 79 |
| Conread position: | 53-329 |
| Cow position: | chr2:40370446-40370186 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 53-331 |
| Cow position: | chr2:3182200-3181920 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 18 |
| Conread position: | 53-333 |
| Cow position: | chr2:3544279-3544002 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 177, 79 |
| Conread position: | 53-333 |
| Cow position: | chr2:63287827-63287558 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 115 |
| Conread position: | 53-334 |
| Cow position: | chr2:72599139-72599413 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 110, 45 |
| Conread position: | 53-337 |
| Cow position: | chr2:7212116-7212394 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 53-339 |
| Cow position: | chr2:18274347-18274064 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 115 |
| Conread position: | 53-340 |
| Cow position: | chr2:7779159-7778882 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 128 |
| Conread position: | 55-309 |
| Cow position: | chr2:76055070-76054836 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 55-332 |
| Cow position: | chr2:43344969-43344690 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 45, 69 |
| Conread position: | 55-334 |
| Cow position: | chr2:41417911-41417640 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 55-389 |
| Cow position: | chr2:23062594-23062273 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 199, 44 |
| Conread position: | 58-353 |
| Cow position: | chr2:31420318-31420617 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 59-331 |
| Cow position: | chr2:19750658-19750925 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 7 |
| Conread position: | 60-343 |
| Cow position: | chr2:12777244-12776970 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 193, 90 |
| Conread position: | 63-270 |
| Cow position: | chr2:38583594-38583384 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 102, 87 |
| Conread position: | 65-333 |
| Cow position: | chr2:49441165-49441426 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 188, 25 |
| Conread position: | 68-337 |
| Cow position: | chr2:38806015-38805750 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 184, 19 |
| Conread position: | 71-288 |
| Cow position: | chr2:3730446-3730660 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 71-322 |
| Cow position: | chr2:45680940-45681198 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 75-309 |
| Cow position: | chr2:19130497-19130721 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 174, 55 |
| Conread position: | 78-337 |
| Cow position: | chr2:9709807-9710062 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 171, 88 |
| Conread position: | 84-316 |
| Cow position: | chr2:47962629-47962412 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 86-333 |
| Cow position: | chr2:19480700-19480939 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 167, 56 |
| Conread position: | 110-333 |
| Cow position: | chr2:43000913-43000696 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 132-334 |
| Cow position: | chr2:53280773-53280980 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 101, 59 |
| Conread position: | 135-338 |
| Cow position: | chr2:20534229-20534026 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 138-299 |
| Cow position: | chr2:73205032-73204869 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 117, 44 |
| Conread position: | 150-333 |
| Cow position: | chr2:78912392-78912208 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 168-337 |
| Cow position: | chr2:12910617-12910790 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 191-334 |
| Cow position: | chr2:16522052-16522199 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 55, 115 |
Show alignments to all cow chromosomes.