Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 16-300 |
| Cow position: | chr21:27521078-27520781 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 19-340 |
| Cow position: | chr21:39075135-39074817 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 150 |
| Conread position: | 31-342 |
| Cow position: | chr21:15543594-15543286 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 32-214 |
| Cow position: | chr21:25019225-25019398 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 32-214 |
| Cow position: | chr21:37941134-37940967 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 32-231 |
| Cow position: | chr21:37356025-37356212 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 32-324 |
| Cow position: | chr21:22941730-22942024 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 32-326 |
| Cow position: | chr21:1991639-1991929 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 27, 112 |
| Conread position: | 32-333 |
| Cow position: | chr21:23286285-23285988 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 32-337 |
| Cow position: | chr21:45962754-45963062 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 32-343 |
| Cow position: | chr21:23399310-23399627 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 32-345 |
| Cow position: | chr21:26632100-26631791 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 33-297 |
| Cow position: | chr21:26579660-26579925 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 132, 5 |
| Conread position: | 38-268 |
| Cow position: | chr21:5994616-5994392 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 20, 152 |
| Conread position: | 41-251 |
| Cow position: | chr21:16679151-16679358 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 48-334 |
| Cow position: | chr21:12079591-12079872 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 53-146 |
| Cow position: | chr21:27089737-27089645 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 53-177 |
| Cow position: | chr21:30793891-30793761 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 53-307 |
| Cow position: | chr21:29643978-29643717 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 79 |
| Conread position: | 53-333 |
| Cow position: | chr21:6667582-6667849 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 112, 77 |
| Conread position: | 53-337 |
| Cow position: | chr21:45447970-45448245 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 196, 23 |
| Conread position: | 53-338 |
| Cow position: | chr21:17671998-17671720 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 204, 25 |
| Conread position: | 53-340 |
| Cow position: | chr21:38021279-38021557 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 196, 20 |
| Conread position: | 55-218 |
| Cow position: | chr21:3614409-3614568 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 55-333 |
| Cow position: | chr21:28709152-28709441 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 60-283 |
| Cow position: | chr21:12756313-12756545 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 64-340 |
| Cow position: | chr21:37282915-37283181 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 19 |
| Conread position: | 77-338 |
| Cow position: | chr21:30567555-30567308 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 78-337 |
| Cow position: | chr21:42396388-42396644 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 174, 84 |
| Conread position: | 98-334 |
| Cow position: | chr21:37170181-37170423 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 103-296 |
| Cow position: | chr21:33975069-33975267 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 114-343 |
| Cow position: | chr21:6282368-6282587 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 141, 51 |
| Conread position: | 117-322 |
| Cow position: | chr21:16166215-16166004 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 134-334 |
| Cow position: | chr21:27678472-27678673 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 123, 47 |
| Conread position: | 152-332 |
| Cow position: | chr21:28650820-28651001 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 191-327 |
| Cow position: | chr21:24972115-24971975 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 191-342 |
| Cow position: | chr21:39527397-39527550 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.