Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 12-327 |
| Cow position: | chr3:2284931-2285248 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 20-331 |
| Cow position: | chr3:78442631-78442319 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 35 |
| Conread position: | 23-336 |
| Cow position: | chr3:60854588-60854273 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 159 |
| Conread position: | 25-330 |
| Cow position: | chr3:15091144-15091431 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 224, 58 |
| Conread position: | 25-334 |
| Cow position: | chr3:22054365-22054067 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 27-333 |
| Cow position: | chr3:12311338-12311646 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 11 |
| Conread position: | 30-337 |
| Cow position: | chr3:45641768-45642066 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 31-321 |
| Cow position: | chr3:43967150-43966865 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 31-333 |
| Cow position: | chr3:26581808-26581502 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 31-334 |
| Cow position: | chr3:60947928-60947628 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 32-255 |
| Cow position: | chr3:56164028-56164251 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 26, 152 |
| Conread position: | 32-264 |
| Cow position: | chr3:65392325-65392567 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 161 |
| Conread position: | 32-295 |
| Cow position: | chr3:9419976-9419707 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 32-327 |
| Cow position: | chr3:23274699-23274409 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 51 |
| Conread position: | 32-334 |
| Cow position: | chr3:55107150-55106850 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 32-334 |
| Cow position: | chr3:74846461-74846154 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 27, 61 |
| Conread position: | 32-337 |
| Cow position: | chr3:8753728-8754027 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 32-337 |
| Cow position: | chr3:68127361-68127660 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 32-338 |
| Cow position: | chr3:12531849-12531545 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 19 |
| Conread position: | 33-321 |
| Cow position: | chr3:79315447-79315731 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 33-327 |
| Cow position: | chr3:85086130-85086401 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 220, 25 |
| Conread position: | 33-328 |
| Cow position: | chr3:21332540-21332256 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 34-334 |
| Cow position: | chr3:24532082-24532391 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 174 |
| Conread position: | 35-338 |
| Cow position: | chr3:32773463-32773764 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 36-337 |
| Cow position: | chr3:50499850-50500129 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 38-283 |
| Cow position: | chr3:58348750-58348992 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 38-339 |
| Cow position: | chr3:13526904-13527183 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 38-344 |
| Cow position: | chr3:56042444-56042146 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 225, 14 |
| Conread position: | 53-215 |
| Cow position: | chr3:77157609-77157757 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 53-288 |
| Cow position: | chr3:73418343-73418583 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 53-304 |
| Cow position: | chr3:3690403-3690166 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 142, 34 |
| Conread position: | 53-333 |
| Cow position: | chr3:35029129-35028838 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 114, 48 |
| Conread position: | 53-334 |
| Cow position: | chr3:36515056-36514793 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 185, 48 |
| Conread position: | 53-334 |
| Cow position: | chr3:39385810-39385541 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 199, 46 |
| Conread position: | 53-337 |
| Cow position: | chr3:27347072-27346791 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 53-337 |
| Cow position: | chr3:54329058-54328788 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 53-339 |
| Cow position: | chr3:64081755-64082029 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 54-273 |
| Cow position: | chr3:47497809-47498024 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 54-334 |
| Cow position: | chr3:1549601-1549880 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 179 |
| Conread position: | 54-340 |
| Cow position: | chr3:77468245-77468535 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 133, 78 |
| Conread position: | 55-327 |
| Cow position: | chr3:34165359-34165091 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 84, 121 |
| Conread position: | 55-338 |
| Cow position: | chr3:23478522-23478805 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 80 |
| Conread position: | 56-327 |
| Cow position: | chr3:27633713-27633442 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 38 |
| Conread position: | 57-334 |
| Cow position: | chr3:5084836-5084575 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 59-289 |
| Cow position: | chr3:55452845-55452603 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 59-325 |
| Cow position: | chr3:13727057-13726776 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 60-337 |
| Cow position: | chr3:17519494-17519225 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 192, 70 |
| Conread position: | 64-350 |
| Cow position: | chr3:81919613-81919344 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 66-283 |
| Cow position: | chr3:6798693-6798481 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 183, 113 |
| Conread position: | 66-342 |
| Cow position: | chr3:73154259-73154525 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 68-179 |
| Cow position: | chr3:32513808-32513698 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 72-337 |
| Cow position: | chr3:43004497-43004232 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 136, 80 |
| Conread position: | 74-333 |
| Cow position: | chr3:31528153-31528391 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 74-334 |
| Cow position: | chr3:77589704-77589953 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 183, 58 |
| Conread position: | 75-332 |
| Cow position: | chr3:74724130-74723871 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 69 |
| Conread position: | 77-334 |
| Cow position: | chr3:63334396-63334141 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 100-317 |
| Cow position: | chr3:52657833-52658046 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 149, 6 |
| Conread position: | 101-337 |
| Cow position: | chr3:1339241-1339475 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 158, 69 |
| Conread position: | 102-336 |
| Cow position: | chr3:52817339-52817573 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 148, 66 |
| Conread position: | 113-327 |
| Cow position: | chr3:31286552-31286343 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 139, 24 |
| Conread position: | 114-316 |
| Cow position: | chr3:69148192-69147991 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 116-270 |
| Cow position: | chr3:27879577-27879423 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 97, 63 |
| Conread position: | 124-294 |
| Cow position: | chr3:5545316-5545481 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 129, 39 |
| Conread position: | 134-334 |
| Cow position: | chr3:45735545-45735746 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 137-334 |
| Cow position: | chr3:49414377-49414182 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 154-337 |
| Cow position: | chr3:41860974-41860790 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 159-339 |
| Cow position: | chr3:5317371-5317186 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 166-347 |
| Cow position: | chr3:36538500-36538309 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.