Cow genome map

Conread name: Thy1-THY010006F03

Conread position: 12-327
Cow position: chr3:2284931-2285248 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 123

Conread position: 20-331
Cow position: chr3:78442631-78442319 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 35

Conread position: 23-336
Cow position: chr3:60854588-60854273 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 159

Conread position: 25-330
Cow position: chr3:15091144-15091431 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 230
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 224, 58

Conread position: 25-334
Cow position: chr3:22054365-22054067 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 33, 62

Conread position: 27-333
Cow position: chr3:12311338-12311646 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 11

Conread position: 30-337
Cow position: chr3:45641768-45642066 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 28, 117

Conread position: 31-321
Cow position: chr3:43967150-43966865 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 221
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 27, 7

Conread position: 31-333
Cow position: chr3:26581808-26581502 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 68

Conread position: 31-334
Cow position: chr3:60947928-60947628 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 8

Conread position: 32-255
Cow position: chr3:56164028-56164251 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 26, 152

Conread position: 32-264
Cow position: chr3:65392325-65392567 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 26, 161

Conread position: 32-295
Cow position: chr3:9419976-9419707 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 26, 85

Conread position: 32-327
Cow position: chr3:23274699-23274409 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 51

Conread position: 32-334
Cow position: chr3:55107150-55106850 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 26, 71

Conread position: 32-334
Cow position: chr3:74846461-74846154 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 61

Conread position: 32-337
Cow position: chr3:8753728-8754027 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 26, 105

Conread position: 32-337
Cow position: chr3:68127361-68127660 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 103

Conread position: 32-338
Cow position: chr3:12531849-12531545 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 19

Conread position: 33-321
Cow position: chr3:79315447-79315731 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 51

Conread position: 33-327
Cow position: chr3:85086130-85086401 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 220, 25

Conread position: 33-328
Cow position: chr3:21332540-21332256 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 43, 30

Conread position: 34-334
Cow position: chr3:24532082-24532391 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 174

Conread position: 35-338
Cow position: chr3:32773463-32773764 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 68

Conread position: 36-337
Cow position: chr3:50499850-50500129 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 22, 45

Conread position: 38-283
Cow position: chr3:58348750-58348992 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 35, 25

Conread position: 38-339
Cow position: chr3:13526904-13527183 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 20, 50

Conread position: 38-344
Cow position: chr3:56042444-56042146 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 225, 14

Conread position: 53-215
Cow position: chr3:77157609-77157757 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 53-288
Cow position: chr3:73418343-73418583 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 26, 51

Conread position: 53-304
Cow position: chr3:3690403-3690166 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 142, 34

Conread position: 53-333
Cow position: chr3:35029129-35028838 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 114, 48

Conread position: 53-334
Cow position: chr3:36515056-36514793 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 185, 48

Conread position: 53-334
Cow position: chr3:39385810-39385541 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 199, 46

Conread position: 53-337
Cow position: chr3:27347072-27346791 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 48

Conread position: 53-337
Cow position: chr3:54329058-54328788 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 191
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 53-339
Cow position: chr3:64081755-64082029 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 54-273
Cow position: chr3:47497809-47498024 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 178
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 65, 12

Conread position: 54-334
Cow position: chr3:1549601-1549880 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 179

Conread position: 54-340
Cow position: chr3:77468245-77468535 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 133, 78

Conread position: 55-327
Cow position: chr3:34165359-34165091 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 84, 121

Conread position: 55-338
Cow position: chr3:23478522-23478805 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 80

Conread position: 56-327
Cow position: chr3:27633713-27633442 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 38

Conread position: 57-334
Cow position: chr3:5084836-5084575 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 23, 71

Conread position: 59-289
Cow position: chr3:55452845-55452603 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 81, 12

Conread position: 59-325
Cow position: chr3:13727057-13726776 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 113, 62

Conread position: 60-337
Cow position: chr3:17519494-17519225 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 192, 70

Conread position: 64-350
Cow position: chr3:81919613-81919344 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 30, 9

Conread position: 66-283
Cow position: chr3:6798693-6798481 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 183, 113

Conread position: 66-342
Cow position: chr3:73154259-73154525 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 58

Conread position: 68-179
Cow position: chr3:32513808-32513698 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 72-337
Cow position: chr3:43004497-43004232 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 136, 80

Conread position: 74-333
Cow position: chr3:31528153-31528391 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 0

Conread position: 74-334
Cow position: chr3:77589704-77589953 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 183, 58

Conread position: 75-332
Cow position: chr3:74724130-74723871 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 69

Conread position: 77-334
Cow position: chr3:63334396-63334141 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 53

Conread position: 100-317
Cow position: chr3:52657833-52658046 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 149, 6

Conread position: 101-337
Cow position: chr3:1339241-1339475 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 158, 69

Conread position: 102-336
Cow position: chr3:52817339-52817573 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 148, 66

Conread position: 113-327
Cow position: chr3:31286552-31286343 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 139, 24

Conread position: 114-316
Cow position: chr3:69148192-69147991 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 8

Conread position: 116-270
Cow position: chr3:27879577-27879423 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 97, 63

Conread position: 124-294
Cow position: chr3:5545316-5545481 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 129, 39

Conread position: 134-334
Cow position: chr3:45735545-45735746 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 12, 47

Conread position: 137-334
Cow position: chr3:49414377-49414182 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 11, 25

Conread position: 154-337
Cow position: chr3:41860974-41860790 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 76, 25

Conread position: 159-339
Cow position: chr3:5317371-5317186 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 94, 0

Conread position: 166-347
Cow position: chr3:36538500-36538309 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.