Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 1-337 |
| Cow position: | chr4:32141018-32140688 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 57, 94 |
| Conread position: | 11-326 |
| Cow position: | chr4:15046127-15046460 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 47, 108 |
| Conread position: | 11-339 |
| Cow position: | chr4:36759544-36759877 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 23-337 |
| Cow position: | chr4:39646951-39647244 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 114 |
| Conread position: | 31-334 |
| Cow position: | chr4:41975437-41975137 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 27, 149 |
| Conread position: | 31-339 |
| Cow position: | chr4:34043338-34043010 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 32-177 |
| Cow position: | chr4:14564612-14564479 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 32-283 |
| Cow position: | chr4:68107078-68106829 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 32-292 |
| Cow position: | chr4:21162928-21163193 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 117 |
| Conread position: | 32-322 |
| Cow position: | chr4:29067356-29067080 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 32-332 |
| Cow position: | chr4:58873539-58873825 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 32-334 |
| Cow position: | chr4:9822433-9822733 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 32-337 |
| Cow position: | chr4:5188725-5188419 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 32-339 |
| Cow position: | chr4:57565939-57565632 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 150 |
| Conread position: | 32-346 |
| Cow position: | chr4:53641609-53641909 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 9 |
| Conread position: | 33-195 |
| Cow position: | chr4:59565827-59565996 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 144 |
| Conread position: | 33-231 |
| Cow position: | chr4:46875220-46875017 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 115 |
| Conread position: | 33-300 |
| Cow position: | chr4:47511309-47511581 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 152 |
| Conread position: | 33-328 |
| Cow position: | chr4:34572248-34571950 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 111 |
| Conread position: | 33-334 |
| Cow position: | chr4:31003075-31002770 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 108 |
| Conread position: | 33-334 |
| Cow position: | chr4:57652493-57652802 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 101 |
| Conread position: | 33-337 |
| Cow position: | chr4:57221934-57221628 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 34-201 |
| Cow position: | chr4:56218623-56218794 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 162 |
| Conread position: | 34-343 |
| Cow position: | chr4:58432678-58432371 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 28 |
| Conread position: | 35-230 |
| Cow position: | chr4:27228748-27228951 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 45-354 |
| Cow position: | chr4:31586300-31585999 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 212, 87 |
| Conread position: | 51-334 |
| Cow position: | chr4:6630019-6629745 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 118 |
| Conread position: | 53-164 |
| Cow position: | chr4:13926354-13926244 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 53-179 |
| Cow position: | chr4:47087103-47086977 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-230 |
| Cow position: | chr4:2237927-2237760 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 76 |
| Conread position: | 53-230 |
| Cow position: | chr4:24713350-24713174 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 145 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 53-230 |
| Cow position: | chr4:58856202-58856029 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 53-251 |
| Cow position: | chr4:51905577-51905772 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 140, 115 |
| Conread position: | 53-283 |
| Cow position: | chr4:32749769-32749998 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 62, 103 |
| Conread position: | 53-323 |
| Cow position: | chr4:27505435-27505688 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 53-327 |
| Cow position: | chr4:63928508-63928240 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 114, 38 |
| Conread position: | 53-333 |
| Cow position: | chr4:5784038-5784299 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 200, 68 |
| Conread position: | 53-333 |
| Cow position: | chr4:25924652-25924377 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 115 |
| Conread position: | 53-333 |
| Cow position: | chr4:49881702-49881409 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 38, 132 |
| Conread position: | 53-337 |
| Cow position: | chr4:49741868-49742149 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 111 |
| Conread position: | 53-339 |
| Cow position: | chr4:2443587-2443306 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 30 |
| Conread position: | 53-339 |
| Cow position: | chr4:22507073-22506794 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 54-329 |
| Cow position: | chr4:35367264-35366981 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 57-251 |
| Cow position: | chr4:20925702-20925517 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 59-340 |
| Cow position: | chr4:5978521-5978247 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 67-326 |
| Cow position: | chr4:23536278-23536564 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 71-322 |
| Cow position: | chr4:54347527-54347777 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 172, 76 |
| Conread position: | 71-343 |
| Cow position: | chr4:5886664-5886929 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 105 |
| Conread position: | 75-211 |
| Cow position: | chr4:1059352-1059222 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 79-330 |
| Cow position: | chr4:4519485-4519730 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 88, 52 |
| Conread position: | 82-338 |
| Cow position: | chr4:52597215-52596959 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 175, 11 |
| Conread position: | 84-340 |
| Cow position: | chr4:9128076-9128340 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 86, 38 |
| Conread position: | 88-338 |
| Cow position: | chr4:52697218-52697459 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 162, 26 |
| Conread position: | 103-323 |
| Cow position: | chr4:27444403-27444626 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 148, 208 |
| Conread position: | 103-370 |
| Cow position: | chr4:58830505-58830255 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 143, 10 |
| Conread position: | 108-358 |
| Cow position: | chr4:59809589-59809349 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 189, 58 |
| Conread position: | 110-309 |
| Cow position: | chr4:4029191-4029391 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 142, 41 |
Show alignments to all cow chromosomes.