Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 22-324 |
| Cow position: | chr5:11235879-11236186 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 23-324 |
| Cow position: | chr5:35748845-35749143 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 23-332 |
| Cow position: | chr5:51076323-51076009 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 35, 113 |
| Conread position: | 23-339 |
| Cow position: | chr5:23234784-23235082 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 234, 38 |
| Conread position: | 25-343 |
| Cow position: | chr5:37048371-37048668 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 241, 13 |
| Conread position: | 31-195 |
| Cow position: | chr5:53599738-53599576 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 31-335 |
| Cow position: | chr5:29431335-29431052 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 232, 24 |
| Conread position: | 31-337 |
| Cow position: | chr5:28770575-28770875 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 32-165 |
| Cow position: | chr5:26161681-26161552 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 32-166 |
| Cow position: | chr5:33283433-33283301 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 32-211 |
| Cow position: | chr5:25925561-25925381 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 26, 150 |
| Conread position: | 32-255 |
| Cow position: | chr5:12609933-12610136 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 32-296 |
| Cow position: | chr5:60968745-60969018 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 32-332 |
| Cow position: | chr5:25355316-25355612 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 32-333 |
| Cow position: | chr5:1304919-1304612 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 62, 142 |
| Conread position: | 32-334 |
| Cow position: | chr5:53922229-53921928 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 32-334 |
| Cow position: | chr5:56109846-56109552 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 235 |
| Conread position: | 32-334 |
| Cow position: | chr5:63620870-63621173 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 213, 26 |
| Conread position: | 32-337 |
| Cow position: | chr5:14072260-14071963 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 30 |
| Conread position: | 32-338 |
| Cow position: | chr5:9585426-9585130 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 212, 28 |
| Conread position: | 32-340 |
| Cow position: | chr5:57964982-57964692 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 32-344 |
| Cow position: | chr5:21145918-21145599 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 100 |
| Conread position: | 32-370 |
| Cow position: | chr5:15705244-15704913 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 32 |
| Conread position: | 33-156 |
| Cow position: | chr5:10455680-10455804 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 33-189 |
| Cow position: | chr5:54606183-54606342 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 33-288 |
| Cow position: | chr5:13575434-13575180 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 33-334 |
| Cow position: | chr5:28371083-28370797 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 25, 138 |
| Conread position: | 38-334 |
| Cow position: | chr5:34168461-34168742 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 44-334 |
| Cow position: | chr5:27679500-27679206 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 49-338 |
| Cow position: | chr5:71278986-71279267 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 33 |
| Conread position: | 53-179 |
| Cow position: | chr5:6149686-6149560 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-272 |
| Cow position: | chr5:57127793-57128001 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 53-283 |
| Cow position: | chr5:56741998-56742221 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 200, 51 |
| Conread position: | 53-334 |
| Cow position: | chr5:26098339-26098072 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 53-334 |
| Cow position: | chr5:26562481-26562752 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 51 |
| Conread position: | 53-334 |
| Cow position: | chr5:38274111-38274399 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 283 |
| Conread position: | 53-337 |
| Cow position: | chr5:9025515-9025801 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 66 |
| Conread position: | 53-337 |
| Cow position: | chr5:51953211-51953495 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 115 |
| Conread position: | 53-337 |
| Cow position: | chr5:67463551-67463833 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 77 |
| Conread position: | 53-355 |
| Cow position: | chr5:66117205-66116921 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 54-168 |
| Cow position: | chr5:37608589-37608706 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 54-283 |
| Cow position: | chr5:39206955-39206730 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 55-334 |
| Cow position: | chr5:15808580-15808306 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 55-339 |
| Cow position: | chr5:12329353-12329076 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 56-299 |
| Cow position: | chr5:20717466-20717699 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 196, 15 |
| Conread position: | 60-361 |
| Cow position: | chr5:19299132-19298831 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 120 |
| Conread position: | 62-334 |
| Cow position: | chr5:39118509-39118761 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 66-334 |
| Cow position: | chr5:47698039-47697772 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 157 |
| Conread position: | 66-339 |
| Cow position: | chr5:20648909-20648639 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 81 |
| Conread position: | 69-337 |
| Cow position: | chr5:57490506-57490775 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 173, 184 |
| Conread position: | 70-334 |
| Cow position: | chr5:27493089-27493351 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 184, 46 |
| Conread position: | 70-339 |
| Cow position: | chr5:12581064-12581314 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 175, 43 |
| Conread position: | 71-332 |
| Cow position: | chr5:60725618-60725877 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 178, 38 |
| Conread position: | 72-337 |
| Cow position: | chr5:33516426-33516153 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 73-340 |
| Cow position: | chr5:1286719-1286979 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 94, 143 |
| Conread position: | 73-343 |
| Cow position: | chr5:31551192-31551454 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 74-352 |
| Cow position: | chr5:29029698-29029978 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 175 |
| Conread position: | 75-334 |
| Cow position: | chr5:54157804-54158066 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 16, 210 |
| Conread position: | 80-326 |
| Cow position: | chr5:55933156-55933392 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 81-327 |
| Cow position: | chr5:56826408-56826653 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 171, 56 |
| Conread position: | 82-309 |
| Cow position: | chr5:18379618-18379833 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 166, 73 |
| Conread position: | 86-288 |
| Cow position: | chr5:70253033-70253238 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 86-337 |
| Cow position: | chr5:33570234-33570471 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 109-333 |
| Cow position: | chr5:49330262-49330491 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 110-332 |
| Cow position: | chr5:67579447-67579667 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 143, 58 |
| Conread position: | 113-334 |
| Cow position: | chr5:12602294-12602509 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 71, 17 |
| Conread position: | 113-334 |
| Cow position: | chr5:37624470-37624692 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 140, 68 |
| Conread position: | 115-334 |
| Cow position: | chr5:9232869-9232658 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 137, 64 |
| Conread position: | 128-294 |
| Cow position: | chr5:31944003-31944169 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 128, 16 |
| Conread position: | 136-304 |
| Cow position: | chr5:54761451-54761619 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 139-337 |
| Cow position: | chr5:42587485-42587287 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 115, 44 |
| Conread position: | 140-327 |
| Cow position: | chr5:31461624-31461818 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 175-335 |
| Cow position: | chr5:67001893-67002058 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 186-348 |
| Cow position: | chr5:65590644-65590479 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 155 |
| Conread position: | 187-334 |
| Cow position: | chr5:62580444-62580595 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 195-334 |
| Cow position: | chr5:57629820-57629677 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 203-342 |
| Cow position: | chr5:59640055-59640199 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.