Cow genome map
| Conread name: | Thy1-THY010006F03 |
| Conread position: | 1-343 |
| Cow position: | chrX:5957040-5956706 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 29-292 |
| Cow position: | chrX:18467780-18468040 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 31-249 |
| Cow position: | chrX:2700787-2700571 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 31-334 |
| Cow position: | chrX:4440175-4440475 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 27 |
| Conread position: | 31-337 |
| Cow position: | chrX:13403426-13403122 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 31-339 |
| Cow position: | chrX:11675391-11675705 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 32-141 |
| Cow position: | chrX:25653433-25653544 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 32-147 |
| Cow position: | chrX:12676254-12676138 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 32-162 |
| Cow position: | chrX:4794171-4794043 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 32-207 |
| Cow position: | chrX:39190917-39190734 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 32-231 |
| Cow position: | chrX:24952041-24951852 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 32-294 |
| Cow position: | chrX:956797-957073 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 32-307 |
| Cow position: | chrX:25921465-25921205 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 32-320 |
| Cow position: | chrX:37956894-37957174 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 206, 26 |
| Conread position: | 32-322 |
| Cow position: | chrX:4631055-4630764 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 32-322 |
| Cow position: | chrX:12688757-12688464 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 32-331 |
| Cow position: | chrX:19017924-19017616 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 284 |
| Conread position: | 32-331 |
| Cow position: | chrX:37236334-37236624 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 32-332 |
| Cow position: | chrX:25453501-25453794 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 32-333 |
| Cow position: | chrX:10534400-10534703 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 32-334 |
| Cow position: | chrX:2147637-2147931 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 32-334 |
| Cow position: | chrX:2186579-2186881 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 98 |
| Conread position: | 32-334 |
| Cow position: | chrX:20505027-20505329 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 32-334 |
| Cow position: | chrX:37137956-37137646 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 32-337 |
| Cow position: | chrX:25106538-25106830 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 120 |
| Conread position: | 32-339 |
| Cow position: | chrX:40353626-40353937 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 106 |
| Conread position: | 32-340 |
| Cow position: | chrX:19127316-19127012 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 32-350 |
| Cow position: | chrX:28939122-28939402 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 130, 58 |
| Conread position: | 33-164 |
| Cow position: | chrX:13060865-13060998 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 33-231 |
| Cow position: | chrX:4597397-4597193 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 33-247 |
| Cow position: | chrX:48428725-48428938 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 33-338 |
| Cow position: | chrX:11982923-11983213 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 33-339 |
| Cow position: | chrX:18700038-18699729 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 152 |
| Conread position: | 33-343 |
| Cow position: | chrX:4625227-4625548 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 53-145 |
| Cow position: | chrX:8558113-8558021 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-166 |
| Cow position: | chrX:24201519-24201632 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-227 |
| Cow position: | chrX:31817024-31817188 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 53-282 |
| Cow position: | chrX:32546240-32546474 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 50, 103 |
| Conread position: | 53-308 |
| Cow position: | chrX:21885762-21885501 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 113, 12 |
| Conread position: | 53-334 |
| Cow position: | chrX:18814513-18814800 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 192, 117 |
| Conread position: | 53-337 |
| Cow position: | chrX:40698587-40698848 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 53-339 |
| Cow position: | chrX:4590297-4590576 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 49 |
| Conread position: | 53-339 |
| Cow position: | chrX:37980733-37981012 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 83 |
| Conread position: | 53-343 |
| Cow position: | chrX:21816614-21816899 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 54-329 |
| Cow position: | chrX:4019584-4019302 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 90 |
| Conread position: | 54-331 |
| Cow position: | chrX:27458386-27458117 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 127 |
| Conread position: | 54-334 |
| Cow position: | chrX:1330450-1330174 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 76 |
| Conread position: | 54-341 |
| Cow position: | chrX:4601296-4601024 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 55-288 |
| Cow position: | chrX:43647408-43647181 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 57-333 |
| Cow position: | chrX:9910403-9910135 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 75 |
| Conread position: | 58-327 |
| Cow position: | chrX:38892193-38891912 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 109, 92 |
| Conread position: | 62-364 |
| Cow position: | chrX:6472063-6472362 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 70 |
| Conread position: | 66-161 |
| Cow position: | chrX:19216814-19216719 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-195 |
| Cow position: | chrX:34035474-34035603 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-333 |
| Cow position: | chrX:20957926-20958201 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 101, 77 |
| Conread position: | 69-339 |
| Cow position: | chrX:23253851-23253587 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 71-330 |
| Cow position: | chrX:37749013-37749277 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 73-337 |
| Cow position: | chrX:44248870-44248612 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 78-189 |
| Cow position: | chrX:24286303-24286412 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 79-346 |
| Cow position: | chrX:11851397-11851142 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 82-341 |
| Cow position: | chrX:6672151-6672410 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 93-329 |
| Cow position: | chrX:40350293-40350517 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 105-272 |
| Cow position: | chrX:4948101-4947936 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 147, 73 |
| Conread position: | 107-337 |
| Cow position: | chrX:18518438-18518664 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 146, 30 |
| Conread position: | 107-339 |
| Cow position: | chrX:35552746-35552968 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 146, 22 |
| Conread position: | 117-334 |
| Cow position: | chrX:16817058-16817265 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 132-326 |
| Cow position: | chrX:1427693-1427890 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 120, 143 |
| Conread position: | 133-338 |
| Cow position: | chrX:30784978-30785183 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 182-337 |
| Cow position: | chrX:24286528-24286683 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 183-334 |
| Cow position: | chrX:19391804-19391650 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 183-337 |
| Cow position: | chrX:25653553-25653712 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 191-340 |
| Cow position: | chrX:503086-502933 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.