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Cow genome map

           
Conread name:
           
Thy1-THY010006F10
        

               
Conread position:
               
7-231
               

               
Cow position:
               
chr21:40820555-40820781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
97, 139
               

               
Conread position:
               
15-180
               

               
Cow position:
               
chr21:5476872-5476701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
20-232
               

               
Cow position:
               
chr21:24797938-24797728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 106
               

               
Conread position:
               
21-198
               

               
Cow position:
               
chr21:48204937-48205117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
22-243
               

               
Cow position:
               
chr21:10009533-10009757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
26-238
               

               
Cow position:
               
chr21:1511563-1511358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 74
               

               
Conread position:
               
27-225
               

               
Cow position:
               
chr21:37299736-37299537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 50
               

               
Conread position:
               
27-225
               

               
Cow position:
               
chr21:37640842-37640640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 190
               

               
Conread position:
               
27-232
               

               
Cow position:
               
chr21:12310749-12310548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
76, 67
               

               
Conread position:
               
27-238
               

               
Cow position:
               
chr21:16082839-16083052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
27-240
               

               
Cow position:
               
chr21:23535988-23535772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
28-197
               

               
Cow position:
               
chr21:34727479-34727312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
75, 140
               

               
Conread position:
               
28-230
               

               
Cow position:
               
chr21:1562253-1562469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr21:745445-745246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr21:12349044-12348836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 186
               

               
Conread position:
               
28-237
               

               
Cow position:
               
chr21:17531409-17531195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
28-238
               

               
Cow position:
               
chr21:36911012-36910802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
127, 74
               

               
Conread position:
               
29-172
               

               
Cow position:
               
chr21:2260074-2260216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 118
               

               
Conread position:
               
29-175
               

               
Cow position:
               
chr21:40821621-40821769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
75, 40
               

               
Conread position:
               
29-189
               

               
Cow position:
               
chr21:40846783-40846621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
29-191
               

               
Cow position:
               
chr21:19236695-19236859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 10
               

               
Conread position:
               
29-199
               

               
Cow position:
               
chr21:21772366-21772192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
29-205
               

               
Cow position:
               
chr21:16498791-16498613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
29-214
               

               
Cow position:
               
chr21:41437885-41437696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-215
               

               
Cow position:
               
chr21:1464617-1464430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
29-216
               

               
Cow position:
               
chr21:19220521-19220712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
29-218
               

               
Cow position:
               
chr21:19083311-19083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
29-222
               

               
Cow position:
               
chr21:4269213-4269025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
29-222
               

               
Cow position:
               
chr21:27744304-27744104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
29-223
               

               
Cow position:
               
chr21:11006495-11006691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
29-225
               

               
Cow position:
               
chr21:7539253-7539450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
29-226
               

               
Cow position:
               
chr21:9311328-9311129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
29-226
               

               
Cow position:
               
chr21:16794068-16793872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
74, 113
               

               
Conread position:
               
29-226
               

               
Cow position:
               
chr21:17559642-17559846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 191
               

               
Conread position:
               
29-226
               

               
Cow position:
               
chr21:30592042-30592234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
29-226
               

               
Cow position:
               
chr21:31246543-31246347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr21:11027085-11027279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr21:15305020-15305223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 189
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr21:18450029-18449829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
74, 169
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr21:47719031-47719223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
29-228
               

               
Cow position:
               
chr21:42135344-42135541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
29-230
               

               
Cow position:
               
chr21:12916145-12916348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
74, 10
               

               
Conread position:
               
29-230
               

               
Cow position:
               
chr21:13842766-13842562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-230
               

               
Cow position:
               
chr21:23979905-23980109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
74, 187
               

               
Conread position:
               
29-230
               

               
Cow position:
               
chr21:31658879-31659074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
29-230
               

               
Cow position:
               
chr21:41156145-41155938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
123, 78
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr21:71860-71659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 83
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr21:18578295-18578490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr21:18783193-18783397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr21:41590292-41590493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 94
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr21:10264309-10264104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
74, 185
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr21:17890577-17890373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 99
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr21:20153231-20153027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
75, 185
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr21:37837803-37837995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
29-232
               

               
Cow position:
               
chr21:41621402-41621196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
75, 187
               

               
Conread position:
               
29-234
               

               
Cow position:
               
chr21:13589037-13588833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
8, 118
               

               
Conread position:
               
29-236
               

               
Cow position:
               
chr21:13584778-13584994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
74, 193
               

               
Conread position:
               
29-237
               

               
Cow position:
               
chr21:10817310-10817097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 186
               

               
Conread position:
               
29-237
               

               
Cow position:
               
chr21:32297234-32297453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 192
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:6834324-6834114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 105
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:13656361-13656571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:14452507-14452299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
75, 45
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:17983245-17983045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:18318987-18318777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 166
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:20213498-20213712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:22718509-22718718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
74, 62
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:23568498-23568289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 15
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:24296492-24296703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:38943334-38943554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
74, 60
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:41610452-41610232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:44724102-44724303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr21:44829483-44829694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-241
               

               
Cow position:
               
chr21:42189487-42189695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 13
               

               
Conread position:
               
29-242
               

               
Cow position:
               
chr21:46809492-46809706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
29-243
               

               
Cow position:
               
chr21:21900321-21900533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 88
               

               
Conread position:
               
29-245
               

               
Cow position:
               
chr21:9301499-9301281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 96
               

               
Conread position:
               
29-246
               

               
Cow position:
               
chr21:20174586-20174375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
130, 73
               

               
Conread position:
               
30-185
               

               
Cow position:
               
chr21:7768735-7768894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
30-192
               

               
Cow position:
               
chr21:15444808-15444975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
30-219
               

               
Cow position:
               
chr21:28907275-28907464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
30-230
               

               
Cow position:
               
chr21:12739362-12739153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
20, 192
               

               
Conread position:
               
30-231
               

               
Cow position:
               
chr21:24875622-24875424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
30-231
               

               
Cow position:
               
chr21:28030551-28030361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
129, 12
               

               
Conread position:
               
30-238
               

               
Cow position:
               
chr21:30231424-30231629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
30-239
               

               
Cow position:
               
chr21:42146417-42146210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
30-245
               

               
Cow position:
               
chr21:43693090-43692874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
74, 53
               

               
Conread position:
               
30-248
               

               
Cow position:
               
chr21:48482257-48482474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
118, 97
               

               
Conread position:
               
32-230
               

               
Cow position:
               
chr21:2536865-2537066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 184
               

               
Conread position:
               
32-230
               

               
Cow position:
               
chr21:32647915-32648116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
71, 184
               

               
Conread position:
               
32-232
               

               
Cow position:
               
chr21:13225988-13225786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
32-238
               

               
Cow position:
               
chr21:21686688-21686483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
72, 44
               

               
Conread position:
               
32-242
               

               
Cow position:
               
chr21:17874919-17875132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 185
               

               
Conread position:
               
33-225
               

               
Cow position:
               
chr21:10072435-10072242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
33-227
               

               
Cow position:
               
chr21:29014647-29014834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
126, 68
               

               
Conread position:
               
34-230
               

               
Cow position:
               
chr21:36695821-36696017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
35-206
               

               
Cow position:
               
chr21:41482705-41482879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
68, 95
               

               
Conread position:
               
35-215
               

               
Cow position:
               
chr21:3135600-3135782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
69, 39
               

               
Conread position:
               
35-229
               

               
Cow position:
               
chr21:40457876-40457673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 59
               

               
Conread position:
               
35-232
               

               
Cow position:
               
chr21:46612536-46612723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
35-238
               

               
Cow position:
               
chr21:34151843-34151651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
35-238
               

               
Cow position:
               
chr21:41140446-41140652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 177
               

               
Conread position:
               
36-223
               

               
Cow position:
               
chr21:28882450-28882259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 88
               

               
Conread position:
               
36-238
               

               
Cow position:
               
chr21:27810659-27810455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 177
               

               
Conread position:
               
37-223
               

               
Cow position:
               
chr21:17403580-17403770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
39-194
               

               
Cow position:
               
chr21:31258735-31258574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
39-206
               

               
Cow position:
               
chr21:742538-742374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
39-219
               

               
Cow position:
               
chr21:13134861-13134684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
39-222
               

               
Cow position:
               
chr21:16797116-16796932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
39-222
               

               
Cow position:
               
chr21:42680332-42680521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 160
               

               
Conread position:
               
39-229
               

               
Cow position:
               
chr21:43316628-43316821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 177
               

               
Conread position:
               
39-231
               

               
Cow position:
               
chr21:802059-802245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
39-231
               

               
Cow position:
               
chr21:36682590-36682397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 66
               

               
Conread position:
               
39-233
               

               
Cow position:
               
chr21:4109041-4108845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
120, 176
               

               
Conread position:
               
39-236
               

               
Cow position:
               
chr21:938285-938086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
116, 177
               

               
Conread position:
               
39-237
               

               
Cow position:
               
chr21:30658125-30657936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
120, 61
               

               
Conread position:
               
39-238
               

               
Cow position:
               
chr21:868655-868859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
64, 93
               

               
Conread position:
               
39-238
               

               
Cow position:
               
chr21:4281618-4281810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
39-238
               

               
Cow position:
               
chr21:18568373-18568574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
39-240
               

               
Cow position:
               
chr21:42131074-42131292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 191
               

               
Conread position:
               
39-242
               

               
Cow position:
               
chr21:5218972-5218763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
40-226
               

               
Cow position:
               
chr21:8924634-8924446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
40-231
               

               
Cow position:
               
chr21:27409475-27409660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
40-231
               

               
Cow position:
               
chr21:39319147-39319338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
40-238
               

               
Cow position:
               
chr21:5406075-5405881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
40-238
               

               
Cow position:
               
chr21:38720512-38720315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 50
               

               
Conread position:
               
41-238
               

               
Cow position:
               
chr21:17184180-17183982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
118, 60
               

               
Conread position:
               
42-167
               

               
Cow position:
               
chr21:41829117-41829246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
42-181
               

               
Cow position:
               
chr21:16099299-16099444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
42-202
               

               
Cow position:
               
chr21:8358968-8359125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
42-204
               

               
Cow position:
               
chr21:19339969-19340133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 80
               

               
Conread position:
               
42-207
               

               
Cow position:
               
chr21:8506286-8506451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 65
               

               
Conread position:
               
42-207
               

               
Cow position:
               
chr21:8509174-8509339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
117, 65
               

               
Conread position:
               
42-216
               

               
Cow position:
               
chr21:6292010-6291832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
42-226
               

               
Cow position:
               
chr21:8950454-8950266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
42-230
               

               
Cow position:
               
chr21:5427188-5427013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
42-230
               

               
Cow position:
               
chr21:7201412-7201222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
117, 173
               

               
Conread position:
               
42-231
               

               
Cow position:
               
chr21:641845-641659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 58
               

               
Conread position:
               
42-231
               

               
Cow position:
               
chr21:17252716-17252906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
42-231
               

               
Cow position:
               
chr21:29069062-29069255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 170
               

               
Conread position:
               
42-232
               

               
Cow position:
               
chr21:3763490-3763671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
113, 27
               

               
Conread position:
               
42-232
               

               
Cow position:
               
chr21:11099709-11099900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
42-232
               

               
Cow position:
               
chr21:18155303-18155495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
108, 172
               

               
Conread position:
               
42-232
               

               
Cow position:
               
chr21:47761032-47760839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 173
               

               
Conread position:
               
42-234
               

               
Cow position:
               
chr21:38918463-38918273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 172
               

               
Conread position:
               
42-234
               

               
Cow position:
               
chr21:41738169-41737977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
42-235
               

               
Cow position:
               
chr21:8713696-8713892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 174
               

               
Conread position:
               
42-236
               

               
Cow position:
               
chr21:646054-646246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
61, 163
               

               
Conread position:
               
42-237
               

               
Cow position:
               
chr21:957930-957739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
108, 65
               

               
Conread position:
               
42-237
               

               
Cow position:
               
chr21:11644705-11644900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
42-237
               

               
Cow position:
               
chr21:30222603-30222411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
117, 55
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:3585103-3585303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:6583879-6584073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 94
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:13580676-13580478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 99
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:18059698-18059896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 174
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:26735658-26735474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:29658535-29658341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:31279514-31279321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:31652648-31652453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 152
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:32339484-32339675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
117, 55
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr21:40291488-40291681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 57
               

               
Conread position:
               
42-239
               

               
Cow position:
               
chr21:10660630-10660829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
42-240
               

               
Cow position:
               
chr21:27677744-27677547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
61, 163
               

               
Conread position:
               
42-241
               

               
Cow position:
               
chr21:30977007-30977193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
116, 58
               

               
Conread position:
               
43-185
               

               
Cow position:
               
chr21:30359090-30359228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
43-187
               

               
Cow position:
               
chr21:46627499-46627358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
43-197
               

               
Cow position:
               
chr21:5345141-5344983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
43-206
               

               
Cow position:
               
chr21:45537450-45537280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
19, 105
               

               
Conread position:
               
43-207
               

               
Cow position:
               
chr21:23673005-23672840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 41
               

               
Conread position:
               
43-215
               

               
Cow position:
               
chr21:15271179-15271350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
43-215
               

               
Cow position:
               
chr21:31278448-31278270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
43-216
               

               
Cow position:
               
chr21:12473802-12473974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
43-216
               

               
Cow position:
               
chr21:47860861-47860684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
43-218
               

               
Cow position:
               
chr21:874785-874605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
43-221
               

               
Cow position:
               
chr21:20193233-20193050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
43-230
               

               
Cow position:
               
chr21:9278788-9278596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 174
               

               
Conread position:
               
43-230
               

               
Cow position:
               
chr21:14247396-14247208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
60, 164
               

               
Conread position:
               
43-230
               

               
Cow position:
               
chr21:18341479-18341291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
43-230
               

               
Cow position:
               
chr21:44251581-44251770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
43-231
               

               
Cow position:
               
chr21:874584-874393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 172
               

               
Conread position:
               
43-231
               

               
Cow position:
               
chr21:10587224-10587415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 172
               

               
Conread position:
               
43-231
               

               
Cow position:
               
chr21:34737421-34737238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 44
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:6154060-6153872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:8430837-8431029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 183
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:10130407-10130215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 172
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:11174504-11174310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
61, 174
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:15869946-15869761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
109, 8
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:17155688-17155881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 173
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:17842735-17842926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 169
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:19148373-19148181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:21940151-21940336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
110, 48
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:25345124-25344932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
60, 174
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:26828711-26828900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
61, 164
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr21:37928911-37928720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
43-236
               

               
Cow position:
               
chr21:28244727-28244536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chr21:33993-33784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 185
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chr21:27711974-27712178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 178
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chr21:28792673-28792471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chr21:28919271-28919458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chr21:30938406-30938607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chr21:37706152-37706350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chr21:40475761-40475564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
60, 173
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chr21:45970919-45971107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 57
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chr21:49699777-49699975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 173
               

               
Conread position:
               
43-242
               

               
Cow position:
               
chr21:17519288-17519082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 176
               

               
Conread position:
               
43-243
               

               
Cow position:
               
chr21:3178105-3177907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
43-247
               

               
Cow position:
               
chr21:10656841-10657047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 172
               

               
Conread position:
               
43-251
               

               
Cow position:
               
chr21:40266384-40266177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
60, 170
               

               
Conread position:
               
44-157
               

               
Cow position:
               
chr21:12293282-12293169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
44-199
               

               
Cow position:
               
chr21:43655961-43655805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
44-202
               

               
Cow position:
               
chr21:16119903-16120061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
115, 30
               

               
Conread position:
               
44-213
               

               
Cow position:
               
chr21:9873579-9873406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
44-219
               

               
Cow position:
               
chr21:37495685-37495863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr21:22720826-22720653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
44-224
               

               
Cow position:
               
chr21:30970194-30970014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
60, 38
               

               
Conread position:
               
44-226
               

               
Cow position:
               
chr21:11353323-11353137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
20, 174
               

               
Conread position:
               
44-226
               

               
Cow position:
               
chr21:11779279-11779464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
59, 133
               

               
Conread position:
               
44-226
               

               
Cow position:
               
chr21:19702989-19702814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
44-227
               

               
Cow position:
               
chr21:41974108-41974303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 177
               

               
Conread position:
               
44-229
               

               
Cow position:
               
chr21:10138198-10138009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
44-230
               

               
Cow position:
               
chr21:6998200-6998015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
115, 59
               

               
Conread position:
               
44-230
               

               
Cow position:
               
chr21:26018640-26018452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
44-230
               

               
Cow position:
               
chr21:36115866-36115676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 173
               

               
Conread position:
               
44-232
               

               
Cow position:
               
chr21:12322757-12322568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
44-232
               

               
Cow position:
               
chr21:41041207-41041015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
44-232
               

               
Cow position:
               
chr21:41917980-41918170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
44-235
               

               
Cow position:
               
chr21:5465006-5464816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
44-236
               

               
Cow position:
               
chr21:27521083-27521272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:47306-47105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
59, 176
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:6051764-6051568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:6713265-6713460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:12154384-12154196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
173, 63
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:12461710-12461902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:14464845-14464645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 175
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:22209984-22210181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:23587131-23586947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:29418832-29418637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
12, 171
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:30145374-30145563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:38482641-38482448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 68
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:38901022-38900839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr21:39664139-39664333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
44-240
               

               
Cow position:
               
chr21:8986285-8986085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
60, 173
               

               
Conread position:
               
44-240
               

               
Cow position:
               
chr21:40589221-40589419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
44-240
               

               
Cow position:
               
chr21:42501311-42501109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
59, 85
               

               
Conread position:
               
44-242
               

               
Cow position:
               
chr21:27863260-27863452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
44-242
               

               
Cow position:
               
chr21:36763321-36763122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
44-246
               

               
Cow position:
               
chr21:29011717-29011904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
44-321
               

               
Cow position:
               
chr21:6042048-6041763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 238
               

               
Conread position:
               
45-176
               

               
Cow position:
               
chr21:42227439-42227573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
45-202
               

               
Cow position:
               
chr21:18495473-18495321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
45-223
               

               
Cow position:
               
chr21:24757195-24757018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
45-228
               

               
Cow position:
               
chr21:24351109-24350927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 137
               

               
Conread position:
               
45-231
               

               
Cow position:
               
chr21:22211514-22211325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 170
               

               
Conread position:
               
45-237
               

               
Cow position:
               
chr21:38449194-38449379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 69
               

               
Conread position:
               
45-238
               

               
Cow position:
               
chr21:9477422-9477229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 73
               

               
Conread position:
               
45-238
               

               
Cow position:
               
chr21:10004625-10004820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
60, 153
               

               
Conread position:
               
45-240
               

               
Cow position:
               
chr21:16152698-16152507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
46-202
               

               
Cow position:
               
chr21:32536648-32536496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 66
               

               
Conread position:
               
46-207
               

               
Cow position:
               
chr21:47713750-47713913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
46-225
               

               
Cow position:
               
chr21:30835623-30835441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
61, 171
               

               
Conread position:
               
46-226
               

               
Cow position:
               
chr21:37360982-37361165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 54
               

               
Conread position:
               
46-230
               

               
Cow position:
               
chr21:20160935-20160749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
58, 27
               

               
Conread position:
               
46-235
               

               
Cow position:
               
chr21:42017343-42017535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
7, 42
               

               
Conread position:
               
46-238
               

               
Cow position:
               
chr21:10114075-10114265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
7, 73
               

               
Conread position:
               
48-171
               

               
Cow position:
               
chr21:37014170-37014297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
48-236
               

               
Cow position:
               
chr21:34010141-34010328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 92
               

               
Conread position:
               
49-232
               

               
Cow position:
               
chr21:16604060-16604246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 166
               

               
Conread position:
               
49-257
               

               
Cow position:
               
chr21:14746026-14745815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 164
               

               
Conread position:
               
50-188
               

               
Cow position:
               
chr21:40916734-40916597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
50-221
               

               
Cow position:
               
chr21:8545767-8545941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 167
               

               
Conread position:
               
50-232
               

               
Cow position:
               
chr21:17193495-17193680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
53, 84
               

               
Conread position:
               
51-215
               

               
Cow position:
               
chr21:27568146-27567981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 36
               

               
Conread position:
               
51-226
               

               
Cow position:
               
chr21:8494895-8494717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
52, 165
               

               
Conread position:
               
51-232
               

               
Cow position:
               
chr21:15584171-15584348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
107, 23
               

               
Conread position:
               
51-237
               

               
Cow position:
               
chr21:34833826-34834014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
52-227
               

               
Cow position:
               
chr21:42355892-42355706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
51, 180
               

               
Conread position:
               
52-230
               

               
Cow position:
               
chr21:19161966-19161785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 164
               

               
Conread position:
               
52-231
               

               
Cow position:
               
chr21:41287545-41287721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
52-232
               

               
Cow position:
               
chr21:8242166-8241983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 163
               

               
Conread position:
               
52-232
               

               
Cow position:
               
chr21:24266310-24266495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
52-233
               

               
Cow position:
               
chr21:6317434-6317617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 163
               

               
Conread position:
               
52-238
               

               
Cow position:
               
chr21:28237448-28237641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 149
               

               
Conread position:
               
54-230
               

               
Cow position:
               
chr21:3360767-3360943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
57-215
               

               
Cow position:
               
chr21:7424767-7424927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
64-207
               

               
Cow position:
               
chr21:42905156-42905303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
64-238
               

               
Cow position:
               
chr21:27145749-27145927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
66-242
               

               
Cow position:
               
chr21:14360605-14360426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
66-244
               

               
Cow position:
               
chr21:6624396-6624216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
69-238
               

               
Cow position:
               
chr21:7377689-7377861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
36, 147
               

               
Conread position:
               
69-243
               

               
Cow position:
               
chr21:28191583-28191416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
72-232
               

               
Cow position:
               
chr21:10410454-10410295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
73-238
               

               
Cow position:
               
chr21:34738805-34738642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
73-239
               

               
Cow position:
               
chr21:9346656-9346486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
30, 144
               

               
Conread position:
               
74-238
               

               
Cow position:
               
chr21:6735964-6736124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
77-238
               

               
Cow position:
               
chr21:9416476-9416315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 45
               

               
Conread position:
               
96-232
               

               
Cow position:
               
chr21:26245125-26244985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
7, 121
               

               
Conread position:
               
99-232
               

               
Cow position:
               
chr21:43265188-43265324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
100-238
               

               
Cow position:
               
chr21:8978653-8978514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 114
               

               
Conread position:
               
105-230
               

               
Cow position:
               
chr21:10538055-10538182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 110
               

               
Conread position:
               
105-238
               

               
Cow position:
               
chr21:13164059-13163924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
108-238
               

               
Cow position:
               
chr21:23321881-23322013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
114-238
               

               
Cow position:
               
chr21:41598002-41597876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 101
               

               
Conread position:
               
117-238
               

               
Cow position:
               
chr21:7584038-7583915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
131-250
               

               
Cow position:
               
chr21:27406070-27406191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
320-516
               

               
Cow position:
               
chr21:17642956-17643154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 65
               

               
Conread position:
               
336-477
               

               
Cow position:
               
chr21:13089472-13089610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
336-492
               

               
Cow position:
               
chr21:33729428-33729277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
337-480
               

               
Cow position:
               
chr21:31676488-31676353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
338-511
               

               
Cow position:
               
chr21:21223283-21223111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
144, 47
               

               
Conread position:
               
340-453
               

               
Cow position:
               
chr21:23980192-23980305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 44
               

               
Conread position:
               
340-478
               

               
Cow position:
               
chr21:5566988-5566847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
340-480
               

               
Cow position:
               
chr21:30231703-30231847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
340-480
               

               
Cow position:
               
chr21:31159251-31159111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
341-468
               

               
Cow position:
               
chr21:42384497-42384372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
341-475
               

               
Cow position:
               
chr21:11250866-11250725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
341-478
               

               
Cow position:
               
chr21:41198417-41198554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
341-480
               

               
Cow position:
               
chr21:18790572-18790701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
341-480
               

               
Cow position:
               
chr21:32535963-32535831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 45
               

               
Conread position:
               
341-492
               

               
Cow position:
               
chr21:28626227-28626081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
341-502
               

               
Cow position:
               
chr21:41579743-41579580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
341-503
               

               
Cow position:
               
chr21:13128109-13128264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
343-457
               

               
Cow position:
               
chr21:27712223-27712341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
343-476
               

               
Cow position:
               
chr21:18494954-18494824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
343-477
               

               
Cow position:
               
chr21:17193768-17193902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
343-478
               

               
Cow position:
               
chr21:38449462-38449595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
343-479
               

               
Cow position:
               
chr21:43357273-43357408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
343-479
               

               
Cow position:
               
chr21:45330616-45330752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
343-480
               

               
Cow position:
               
chr21:2785791-2785925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
343-480
               

               
Cow position:
               
chr21:5636733-5636866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
343-480
               

               
Cow position:
               
chr21:7564332-7564468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
343-480
               

               
Cow position:
               
chr21:20925521-20925652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
343-480
               

               
Cow position:
               
chr21:24607376-24607240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 41
               

               
Conread position:
               
343-480
               

               
Cow position:
               
chr21:26648018-26648151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
343-480
               

               
Cow position:
               
chr21:27146004-27146137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
343-480
               

               
Cow position:
               
chr21:41597806-41597670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
343-480
               

               
Cow position:
               
chr21:42348689-42348823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
343-492
               

               
Cow position:
               
chr21:6051492-6051349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
343-493
               

               
Cow position:
               
chr21:20152939-20152790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
343-493
               

               
Cow position:
               
chr21:39401579-39401433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
139, 39
               

               
Conread position:
               
343-502
               

               
Cow position:
               
chr21:4904981-4905141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
343-502
               

               
Cow position:
               
chr21:39450178-39450336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
343-507
               

               
Cow position:
               
chr21:13163876-13163718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
343-507
               

               
Cow position:
               
chr21:31277807-31277646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
343-511
               

               
Cow position:
               
chr21:40244425-40244255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
343-515
               

               
Cow position:
               
chr21:24887996-24887826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
139, 38
               

               
Conread position:
               
345-446
               

               
Cow position:
               
chr21:24094765-24094867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
345-473
               

               
Cow position:
               
chr21:12461987-12462109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
345-476
               

               
Cow position:
               
chr21:40134143-40134015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
345-478
               

               
Cow position:
               
chr21:3361030-3361158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
345-479
               

               
Cow position:
               
chr21:3763756-3763882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
93, 39
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:10823550-10823408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:15445090-15445224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:17175134-17174999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:24642503-24642373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:27863532-27863665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:32237278-32237152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:34659017-34658889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:37345114-37345247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:38900761-38900629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr21:47802274-47802405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
345-492
               

               
Cow position:
               
chr21:17183906-17183765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
345-493
               

               
Cow position:
               
chr21:4080342-4080195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
345-507
               

               
Cow position:
               
chr21:33562997-33562840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 38
               

               
Conread position:
               
345-511
               

               
Cow position:
               
chr21:13303803-13303640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
148, 73
               

               
Conread position:
               
345-615
               

               
Cow position:
               
chr21:39403553-39403805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
347-480
               

               
Cow position:
               
chr21:911986-912112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
347-480
               

               
Cow position:
               
chr21:19258811-19258681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
347-507
               

               
Cow position:
               
chr21:11706764-11706926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
348-480
               

               
Cow position:
               
chr21:7716804-7716936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
348-480
               

               
Cow position:
               
chr21:43631219-43631348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               
Show alignments to all cow chromosomes.