Cow genome map

Conread name: Thy1-THY010009E11

Conread position: 61-357
Cow position: chr27:31148825-31148518 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 199
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 29, 205

Conread position: 64-279
Cow position: chr27:18922772-18922997 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 11

Conread position: 69-290
Cow position: chr27:20637011-20637237 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 55

Conread position: 78-271
Cow position: chr27:26793742-26793938 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 37

Conread position: 80-312
Cow position: chr27:24371280-24371045 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 43, 29

Conread position: 82-272
Cow position: chr27:23554289-23554484 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 118

Conread position: 82-277
Cow position: chr27:25809482-25809678 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 32

Conread position: 82-282
Cow position: chr27:31017793-31017993 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 59, 22

Conread position: 82-288
Cow position: chr27:7935117-7935331 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 82-288
Cow position: chr27:20354625-20354427 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 190, 46

Conread position: 82-288
Cow position: chr27:29184797-29185010 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 189

Conread position: 82-288
Cow position: chr27:29261292-29261511 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 83-211
Cow position: chr27:24999700-24999834 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 89-272
Cow position: chr27:26489871-26490066 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 89-282
Cow position: chr27:30354309-30354512 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 89-285
Cow position: chr27:28896914-28896710 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 44, 100

Conread position: 91-242
Cow position: chr27:21976081-21975924 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 25

Conread position: 91-260
Cow position: chr27:17646135-17646314 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 91-261
Cow position: chr27:18593301-18593126 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 42, 100

Conread position: 91-261
Cow position: chr27:22225563-22225739 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 109

Conread position: 91-261
Cow position: chr27:23735992-23735821 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 35, 126

Conread position: 91-270
Cow position: chr27:19546479-19546667 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 91-271
Cow position: chr27:1353619-1353426 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 91-271
Cow position: chr27:20812943-20812748 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 91-271
Cow position: chr27:22454746-22454933 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 0

Conread position: 91-272
Cow position: chr27:12596797-12596619 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 72, 49

Conread position: 91-272
Cow position: chr27:26852560-26852737 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 49

Conread position: 91-272
Cow position: chr27:28518327-28518138 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 91-275
Cow position: chr27:6925121-6924924 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 91-275
Cow position: chr27:16705284-16705090 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 47, 0

Conread position: 91-275
Cow position: chr27:17472841-17472652 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 129

Conread position: 91-275
Cow position: chr27:17918283-17918474 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 48, 0

Conread position: 91-275
Cow position: chr27:27038808-27038998 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 12

Conread position: 91-275
Cow position: chr27:27640970-27641171 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 179

Conread position: 91-275
Cow position: chr27:28260507-28260696 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 40, 11

Conread position: 91-275
Cow position: chr27:29380888-29380694 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 112

Conread position: 91-275
Cow position: chr27:30988828-30988637 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 91-276
Cow position: chr27:2592580-2592380 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 91-276
Cow position: chr27:24331753-24331559 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 90

Conread position: 91-279
Cow position: chr27:1636903-1637100 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 91-283
Cow position: chr27:29593596-29593797 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 91-285
Cow position: chr27:14303766-14303568 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 37, 106

Conread position: 91-285
Cow position: chr27:15343248-15343448 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 42, 109

Conread position: 91-285
Cow position: chr27:26111877-26112086 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 91-287
Cow position: chr27:15867428-15867217 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 42, 24

Conread position: 92-232
Cow position: chr27:30672533-30672676 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 102, 48

Conread position: 92-269
Cow position: chr27:3306801-3306620 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 45, 71

Conread position: 92-270
Cow position: chr27:18558390-18558205 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 111

Conread position: 92-271
Cow position: chr27:6550488-6550307 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 40, 74

Conread position: 92-271
Cow position: chr27:10653717-10653528 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 92-272
Cow position: chr27:23882347-23882525 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 27

Conread position: 92-272
Cow position: chr27:28921866-28922050 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 73

Conread position: 92-275
Cow position: chr27:15643202-15643014 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 92-275
Cow position: chr27:26226259-26226450 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 43, 164

Conread position: 92-275
Cow position: chr27:27064409-27064600 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 42, 16

Conread position: 92-279
Cow position: chr27:16088840-16088640 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 171

Conread position: 92-283
Cow position: chr27:17994912-17995114 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 167

Conread position: 92-285
Cow position: chr27:6541660-6541461 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 92-285
Cow position: chr27:8942652-8942860 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 92-285
Cow position: chr27:15865642-15865436 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 92-285
Cow position: chr27:30868709-30868919 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 92-287
Cow position: chr27:30260858-30261065 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 92-289
Cow position: chr27:10307271-10307472 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 138
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 93-268
Cow position: chr27:19660965-19660778 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 93-271
Cow position: chr27:4386031-4386218 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 93-322
Cow position: chr27:1290821-1291055 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 22

Conread position: 94-271
Cow position: chr27:20514850-20514666 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 37, 99

Conread position: 94-274
Cow position: chr27:7649555-7649742 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 94-276
Cow position: chr27:5553502-5553308 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 102

Conread position: 94-279
Cow position: chr27:27270509-27270706 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 73

Conread position: 95-270
Cow position: chr27:22423538-22423360 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 100, 45

Conread position: 95-282
Cow position: chr27:26581408-26581604 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 95-288
Cow position: chr27:20584429-20584627 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 44, 144

Conread position: 96-277
Cow position: chr27:7974201-7974014 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 82

Conread position: 97-255
Cow position: chr27:29831672-29831838 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 98-281
Cow position: chr27:22603201-22603019 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 79

Conread position: 98-288
Cow position: chr27:31386613-31386805 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 34

Conread position: 101-290
Cow position: chr27:16230914-16231113 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 36, 158

Conread position: 102-271
Cow position: chr27:25152103-25151937 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 86

Conread position: 102-274
Cow position: chr27:15925362-15925186 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 102-275
Cow position: chr27:26413232-26413415 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 102-285
Cow position: chr27:30915028-30914839 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 103-271
Cow position: chr27:11561796-11561619 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 110-275
Cow position: chr27:18435126-18435294 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 11

Conread position: 118-275
Cow position: chr27:27673016-27673176 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 77, 69

Conread position: 127-263
Cow position: chr27:7731266-7731406 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 140-285
Cow position: chr27:29319389-29319241 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 125

Conread position: 142-275
Cow position: chr27:29388648-29388510 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.