Cow genome map

Conread name: Thy1-THY010009G06

Conread position: 1-282
Cow position: chr17:4298460-4298167 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 196
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 65, 201

Conread position: 1-289
Cow position: chr17:18198677-18198381 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 156

Conread position: 1-289
Cow position: chr17:23041901-23041602 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 200
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 62, 214

Conread position: 1-290
Cow position: chr17:9753108-9752816 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 198
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 75, 116

Conread position: 1-290
Cow position: chr17:11619518-11619226 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 75, 52

Conread position: 1-294
Cow position: chr17:20091300-20091584 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 107

Conread position: 1-294
Cow position: chr17:29079680-29079401 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 62, 78

Conread position: 1-294
Cow position: chr17:30413291-30412987 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 33, 26

Conread position: 2-152
Cow position: chr17:979863-980021 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 150

Conread position: 2-164
Cow position: chr17:36159712-36159883 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 61

Conread position: 2-218
Cow position: chr17:40802069-40801848 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 73, 30

Conread position: 2-258
Cow position: chr17:11913427-11913691 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 152

Conread position: 2-259
Cow position: chr17:38829202-38828941 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 61, 148

Conread position: 2-272
Cow position: chr17:3780972-3780699 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 115

Conread position: 2-287
Cow position: chr17:15374712-15374434 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 109

Conread position: 2-287
Cow position: chr17:18591732-18591451 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 31

Conread position: 2-290
Cow position: chr17:17133654-17133370 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 136

Conread position: 2-290
Cow position: chr17:20215405-20215117 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 66, 61

Conread position: 2-290
Cow position: chr17:22563466-22563171 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 152

Conread position: 2-290
Cow position: chr17:29156695-29156403 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 152

Conread position: 2-290
Cow position: chr17:44482169-44481871 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 50

Conread position: 2-294
Cow position: chr17:144885-145172 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 148

Conread position: 2-294
Cow position: chr17:148228-147944 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 72, 144

Conread position: 2-294
Cow position: chr17:4211251-4210951 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 150

Conread position: 2-294
Cow position: chr17:5043270-5043571 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 135

Conread position: 2-294
Cow position: chr17:8205273-8204968 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 69, 244

Conread position: 2-294
Cow position: chr17:16118143-16118436 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 60, 130

Conread position: 2-294
Cow position: chr17:20093838-20094136 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 73, 160

Conread position: 2-294
Cow position: chr17:21666321-21666026 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 209
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 61, 143

Conread position: 2-294
Cow position: chr17:23337730-23338027 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 67, 148

Conread position: 2-294
Cow position: chr17:31232992-31232699 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 59, 149

Conread position: 2-294
Cow position: chr17:36790388-36790092 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 153

Conread position: 2-294
Cow position: chr17:37415570-37415866 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 157

Conread position: 2-298
Cow position: chr17:14249783-14250090 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 2-306
Cow position: chr17:13674170-13674472 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 44, 145

Conread position: 2-312
Cow position: chr17:29041581-29041896 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 150

Conread position: 3-227
Cow position: chr17:8450031-8449802 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 24

Conread position: 3-238
Cow position: chr17:2201618-2201375 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 149

Conread position: 3-249
Cow position: chr17:21716783-21716529 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 59, 151

Conread position: 3-252
Cow position: chr17:2521119-2521376 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 72, 151

Conread position: 3-265
Cow position: chr17:36284588-36284318 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 151

Conread position: 3-268
Cow position: chr17:39823873-39824146 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 60, 151

Conread position: 3-276
Cow position: chr17:2244751-2245025 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 59, 114

Conread position: 3-289
Cow position: chr17:241616-241329 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 154

Conread position: 3-290
Cow position: chr17:138923-138634 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 192
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 60, 102

Conread position: 3-290
Cow position: chr17:14243147-14242855 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 60, 149

Conread position: 3-290
Cow position: chr17:20391095-20390800 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr17:184468-184169 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr17:731177-731469 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 60, 102

Conread position: 3-294
Cow position: chr17:1970472-1970173 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr17:2583708-2583414 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 60, 144

Conread position: 3-294
Cow position: chr17:4635462-4635753 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 60

Conread position: 3-294
Cow position: chr17:5806168-5806467 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr17:6263175-6262878 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 142

Conread position: 3-294
Cow position: chr17:6612343-6612044 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr17:6955960-6955669 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr17:8212377-8212083 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 137

Conread position: 3-294
Cow position: chr17:8223026-8222727 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 60, 149

Conread position: 3-294
Cow position: chr17:11083814-11084113 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 58, 149

Conread position: 3-294
Cow position: chr17:15708672-15708971 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr17:15854056-15853756 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 60, 149

Conread position: 3-294
Cow position: chr17:16854776-16855075 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 202
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 150

Conread position: 3-294
Cow position: chr17:16903900-16903607 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 59, 149

Conread position: 3-294
Cow position: chr17:17128325-17128027 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 59, 147

Conread position: 3-294
Cow position: chr17:18099753-18100052 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 149

Conread position: 3-294
Cow position: chr17:20546458-20546159 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr17:23321099-23321394 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 60, 151

Conread position: 3-294
Cow position: chr17:24785511-24785212 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr17:25739617-25739318 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 60, 149

Conread position: 3-294
Cow position: chr17:29950533-29950237 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 60, 149

Conread position: 3-294
Cow position: chr17:30182260-30182558 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 59, 111

Conread position: 3-294
Cow position: chr17:37528651-37528950 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 68, 182

Conread position: 3-295
Cow position: chr17:15439112-15438812 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 151

Conread position: 3-296
Cow position: chr17:13910296-13910589 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 205
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 60, 66

Conread position: 3-306
Cow position: chr17:1457059-1457367 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 65, 60

Conread position: 6-288
Cow position: chr17:20078357-20078639 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 57, 145

Conread position: 6-296
Cow position: chr17:7053943-7054236 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 19

Conread position: 8-178
Cow position: chr17:39629668-39629848 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 16

Conread position: 8-239
Cow position: chr17:254409-254175 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 62, 55

Conread position: 8-257
Cow position: chr17:41893075-41893330 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 67, 107

Conread position: 8-283
Cow position: chr17:1311447-1311729 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 55, 143

Conread position: 8-290
Cow position: chr17:1568904-1569188 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 55, 144

Conread position: 8-290
Cow position: chr17:8351810-8351524 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 197
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 150

Conread position: 8-290
Cow position: chr17:21304605-21304313 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 146

Conread position: 8-294
Cow position: chr17:16447166-16447456 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 54, 174

Conread position: 8-294
Cow position: chr17:18123360-18123649 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 197
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 54, 143

Conread position: 8-294
Cow position: chr17:33934505-33934818 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 9-290
Cow position: chr17:32407369-32407657 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 148

Conread position: 9-293
Cow position: chr17:20084496-20084790 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 54, 144

Conread position: 9-294
Cow position: chr17:22248937-22249230 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 53, 176

Conread position: 11-290
Cow position: chr17:50792-51073 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 138

Conread position: 15-293
Cow position: chr17:11032458-11032174 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 48, 131

Conread position: 19-289
Cow position: chr17:13921536-13921269 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 56, 107

Conread position: 21-290
Cow position: chr17:10270056-10270326 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 54, 94

Conread position: 551-770
Cow position: chr17:15229000-15229214 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 153, 60

Show alignments to all cow chromosomes.