Cow genome map
| Conread name: | Thy1-THY010009G06 |
| Conread position: | 1-208 |
| Cow position: | chr19:29628138-29628356 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 1-287 |
| Cow position: | chr19:4599562-4599274 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 68, 147 |
| Conread position: | 1-287 |
| Cow position: | chr19:55217358-55217063 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 67, 154 |
| Conread position: | 1-288 |
| Cow position: | chr19:28516277-28516568 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 134 |
| Conread position: | 1-289 |
| Cow position: | chr19:26804227-26804537 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 109 |
| Conread position: | 1-289 |
| Cow position: | chr19:40246703-40247000 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 1-290 |
| Cow position: | chr19:33625124-33624834 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 62, 152 |
| Conread position: | 1-294 |
| Cow position: | chr19:39726355-39726040 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 164 |
| Conread position: | 1-296 |
| Cow position: | chr19:52465736-52466029 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 74, 143 |
| Conread position: | 2-124 |
| Cow position: | chr19:42241072-42241200 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 2-150 |
| Cow position: | chr19:19501140-19501297 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 2-155 |
| Cow position: | chr19:14580831-14580668 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 2-168 |
| Cow position: | chr19:30717440-30717268 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 151 |
| Conread position: | 2-196 |
| Cow position: | chr19:7610159-7609964 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 128 |
| Conread position: | 2-212 |
| Cow position: | chr19:49360162-49360367 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 123, 69 |
| Conread position: | 2-239 |
| Cow position: | chr19:15720336-15720567 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 73, 125 |
| Conread position: | 2-242 |
| Cow position: | chr19:34985638-34985392 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 2-247 |
| Cow position: | chr19:12601153-12601401 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 150 |
| Conread position: | 2-262 |
| Cow position: | chr19:130295-130561 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 108 |
| Conread position: | 2-274 |
| Cow position: | chr19:27347517-27347781 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 2-276 |
| Cow position: | chr19:7491641-7491356 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 74, 150 |
| Conread position: | 2-277 |
| Cow position: | chr19:35782846-35783128 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 60, 153 |
| Conread position: | 2-285 |
| Cow position: | chr19:743165-743442 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 2-288 |
| Cow position: | chr19:14156557-14156846 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 2-290 |
| Cow position: | chr19:30473594-30473894 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 114 |
| Conread position: | 2-290 |
| Cow position: | chr19:30937669-30937975 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 152 |
| Conread position: | 2-290 |
| Cow position: | chr19:36189249-36188966 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 152 |
| Conread position: | 2-290 |
| Cow position: | chr19:50561614-50561321 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 2-292 |
| Cow position: | chr19:39697035-39696742 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 2-294 |
| Cow position: | chr19:255576-255874 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 137 |
| Conread position: | 2-294 |
| Cow position: | chr19:4447769-4447465 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 155 |
| Conread position: | 2-294 |
| Cow position: | chr19:20403834-20403535 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 152 |
| Conread position: | 2-294 |
| Cow position: | chr19:35381528-35381823 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 129 |
| Conread position: | 2-294 |
| Cow position: | chr19:46821402-46821107 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 149 |
| Conread position: | 2-303 |
| Cow position: | chr19:7065229-7064927 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 153 |
| Conread position: | 2-310 |
| Cow position: | chr19:1663618-1663307 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 2-316 |
| Cow position: | chr19:1581358-1581681 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 73, 149 |
| Conread position: | 2-316 |
| Cow position: | chr19:29367079-29366758 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 2-316 |
| Cow position: | chr19:29624587-29624266 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 3-201 |
| Cow position: | chr19:30237258-30237054 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 60, 147 |
| Conread position: | 3-245 |
| Cow position: | chr19:36395736-36395486 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-262 |
| Cow position: | chr19:3406730-3406463 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-274 |
| Cow position: | chr19:7078806-7078526 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 3-274 |
| Cow position: | chr19:28794781-28795054 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 59, 149 |
| Conread position: | 3-290 |
| Cow position: | chr19:1293900-1293606 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 3-290 |
| Cow position: | chr19:12652425-12652125 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 3-290 |
| Cow position: | chr19:34905775-34906070 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-294 |
| Cow position: | chr19:542074-542372 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 3-294 |
| Cow position: | chr19:2269751-2270050 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-294 |
| Cow position: | chr19:5902577-5902278 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 58, 151 |
| Conread position: | 3-294 |
| Cow position: | chr19:10195963-10195664 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr19:12209380-12209683 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 3-294 |
| Cow position: | chr19:14157958-14157665 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 3-294 |
| Cow position: | chr19:16316669-16316957 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 101 |
| Conread position: | 3-294 |
| Cow position: | chr19:19389384-19389085 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr19:20611884-20611585 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr19:29393892-29393593 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr19:30037357-30037656 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr19:31782120-31781822 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 3-294 |
| Cow position: | chr19:33528397-33528098 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 59, 182 |
| Conread position: | 3-294 |
| Cow position: | chr19:33876966-33876667 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-294 |
| Cow position: | chr19:33945116-33944818 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 60, 143 |
| Conread position: | 3-294 |
| Cow position: | chr19:39181990-39182289 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 3-294 |
| Cow position: | chr19:39394751-39394452 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-294 |
| Cow position: | chr19:40848939-40849238 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 149 |
| Conread position: | 3-294 |
| Cow position: | chr19:41204677-41204976 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr19:48626609-48626310 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 78, 151 |
| Conread position: | 3-294 |
| Cow position: | chr19:55164107-55164406 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-316 |
| Cow position: | chr19:36351818-36351502 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 8-218 |
| Cow position: | chr19:14528366-14528159 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 118, 60 |
| Conread position: | 8-250 |
| Cow position: | chr19:42867010-42866760 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 149 |
| Conread position: | 8-251 |
| Cow position: | chr19:19173203-19172950 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 8-287 |
| Cow position: | chr19:9099161-9098870 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 8-288 |
| Cow position: | chr19:28912074-28911788 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 8-288 |
| Cow position: | chr19:40883978-40884272 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 55, 175 |
| Conread position: | 8-290 |
| Cow position: | chr19:7472592-7472315 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 67 |
| Conread position: | 8-293 |
| Cow position: | chr19:44839642-44839918 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 9-255 |
| Cow position: | chr19:20672051-20672305 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 145 |
| Conread position: | 9-294 |
| Cow position: | chr19:444394-444684 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 143 |
| Conread position: | 9-294 |
| Cow position: | chr19:9118354-9118061 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 10-290 |
| Cow position: | chr19:5733038-5732750 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 10-294 |
| Cow position: | chr19:28450358-28450076 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 65, 135 |
| Conread position: | 10-307 |
| Cow position: | chr19:6628925-6629226 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 11-294 |
| Cow position: | chr19:2019227-2019507 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 25-294 |
| Cow position: | chr19:48478090-48477825 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 129 |
Show alignments to all cow chromosomes.